mRNA_E-siliculosus-1a_F_contig1554.3210.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1554.3210.1
Unique NamemRNA_E-siliculosus-1a_F_contig1554.3210.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1554.3210.1 vs. uniprot
Match: A0A6H5KX33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX33_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 9.070e-121
Identity = 190/217 (87.56%), Postives = 191/217 (88.02%), Query Frame = 1 
Query:    1 MTTREPPSSISGLKTKYFQHVLDVSSTEPSLSSXXXXXXXXEAAVRWDQPTRRTESTCRATMMGCACCGDTKEAYPSDEDAPSRTHGLRTPPPVPSSSDALAKEALSILSQPEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPE---------RLREEKDHSQRQYLAVLGKLARRQTLLKTSL 624
            MTTREPPS+ISGLKTKYFQHVLDVSSTEPSLSS        EAAVRWDQPTRRTE TCR TMMGC C GDTKEAYPSDEDAPS TH LRTPPPVPSSSDALAKEALSILSQ EKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPE         RLREEKDHSQRQYLAVLGKLARR TLLK SL
Sbjct:    1 MTTREPPSTISGLKTKYFQHVLDVSSTEPSLSSSSSS----EAAVRWDQPTRRTECTCRTTMMGCTCWGDTKEAYPSDEDAPSTTHVLRTPPPVPSSSDALAKEALSILSQAEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPEVAELRLENQRLREEKDHSQRQYLAVLGKLARRHTLLKKSL 213
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BLAST of mRNA_E-siliculosus-1a_F_contig1554.3210.1 vs. uniprot
Match: D7G3C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.080e-48
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:  361 MHAKLRHLSHRAEDARSVSERKVCCLERAHRDALRERMLSEQRLREELRQWKHHHPERLREEKDHSQRQYLAVLGKLARRQTLLKTSL 624
            MHAKLRHLSHRAEDARSVSERK CCLERAHRDALRERMLSEQRLREELRQWKHHHPERLREEKDHSQRQYLAVLGKLARR T LKTSL
Sbjct:    1 MHAKLRHLSHRAEDARSVSERKACCLERAHRDALRERMLSEQRLREELRQWKHHHPERLREEKDHSQRQYLAVLGKLARRHTWLKTSL 88
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1554.3210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX33_9PHAE9.070e-12187.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C8_ECTSI5.080e-4896.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1554contigE-siliculosus-1a_F_contig1554:26614..28764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size627
Model size627
Exons5
Ec32 orthologEc-21_002850.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1554.3210.1prot_E-siliculosus-1a_F_contig1554.3210.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1554 26614..28764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928067.6384492-CDS-E-siliculosus-1a_F_contig1554:26613..266801622928067.6384492-CDS-E-siliculosus-1a_F_contig1554:26613..26680Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 26614..26680 +
1696318793.2334547-CDS-E-siliculosus-1a_F_contig1554:26613..266801696318793.2334547-CDS-E-siliculosus-1a_F_contig1554:26613..26680Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 26614..26680 +
1622928067.6510217-CDS-E-siliculosus-1a_F_contig1554:27077..272291622928067.6510217-CDS-E-siliculosus-1a_F_contig1554:27077..27229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 27078..27229 +
1696318793.2407799-CDS-E-siliculosus-1a_F_contig1554:27077..272291696318793.2407799-CDS-E-siliculosus-1a_F_contig1554:27077..27229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 27078..27229 +
1622928067.6757424-CDS-E-siliculosus-1a_F_contig1554:27445..276101622928067.6757424-CDS-E-siliculosus-1a_F_contig1554:27445..27610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 27446..27610 +
1696318793.2479665-CDS-E-siliculosus-1a_F_contig1554:27445..276101696318793.2479665-CDS-E-siliculosus-1a_F_contig1554:27445..27610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 27446..27610 +
1622928067.687194-CDS-E-siliculosus-1a_F_contig1554:28131..282781622928067.687194-CDS-E-siliculosus-1a_F_contig1554:28131..28278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 28132..28278 +
1696318793.2553825-CDS-E-siliculosus-1a_F_contig1554:28131..282781696318793.2553825-CDS-E-siliculosus-1a_F_contig1554:28131..28278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 28132..28278 +
1622928067.699474-CDS-E-siliculosus-1a_F_contig1554:28668..287641622928067.699474-CDS-E-siliculosus-1a_F_contig1554:28668..28764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 28669..28764 +
1696318793.2625768-CDS-E-siliculosus-1a_F_contig1554:28668..287641696318793.2625768-CDS-E-siliculosus-1a_F_contig1554:28668..28764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1554 28669..28764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1554.3210.1

>prot_E-siliculosus-1a_F_contig1554.3210.1 ID=prot_E-siliculosus-1a_F_contig1554.3210.1|Name=mRNA_E-siliculosus-1a_F_contig1554.3210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=209bp
MTTREPPSSISGLKTKYFQHVLDVSSTEPSLSSSSSSSSSSEAAVRWDQP
TRRTESTCRATMMGCACCGDTKEAYPSDEDAPSRTHGLRTPPPVPSSSDA
LAKEALSILSQPEKDRIILLMHAKLRHLSHRAEDARSVSERKVCCLERAH
RDALRERMLSEQRLREELRQWKHHHPERLREEKDHSQRQYLAVLGKLARR
QTLLKTSL*
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mRNA from alignment at E-siliculosus-1a_F_contig1554:26614..28764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1554.3210.1 ID=mRNA_E-siliculosus-1a_F_contig1554.3210.1|Name=mRNA_E-siliculosus-1a_F_contig1554.3210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2151bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1554:26614..28764+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCACGAGGGAGCCACCGTCGAGCATATCTGGGCTCAAGACAAAGTA
CTTTCAGCATGTCCTAGGTAAAGTTGCGTGGGTGCAGTAAACGGGCGAGC
TTCACACTACGGGGGCGGTTATGCAGTGTCGGAACTTGTTGGCAGAGGAG
AAGAAACGGAGTACTGTACATCCAGCGTGAGCTGTCAGCAACAGGCAGCA
CCTTTTGGTTGGTCTCCAAAGATCTCAAGCAGCCGTTAGGACCTTCATTC
CCCAGCTCAGCAAGAGACGAACAAGGGATTCTCCTTGGGGCTTGCAGCAG
GGATCATCATCCAGCAAGTCATTCGCTTTGTGCCCTTGCATCCGTGCGTC
CGCCACACCCCGGTCCGTCCTTTCTTTTTCCTGGATCCGCTAAATATAAC
GATGTATGCCGTTACCCTTTGCCCCCTCGCGTGCTCCCTTCGATCTCGTC
GCGGGGAATACAAGATGTGTCGTCGACGGAGCCGTCGTTGTCATCATCAT
CATCATCATCATCATCATCAGAGGCAGCCGTGCGCTGGGATCAGCCTACA
CGCAGGACAGAAAGTACTTGCCGAGCTACCATGATGGGGTGTGCTTGTTG
TGGCGATACGAAGGAGGTGAGAGAGGCGCTACGTAGGCGTATTGGAACAA
GACGCATTGTACATGTATTACCATGCATGAAATAGAAACACAAAAAACGT
GGTCTGGACTGTACCTTGACGTGAACGTAATTTGCTGGTGTACATATACA
CCACATCTTACTGCCCTCCCTCCCATAGGATGAATACTAGACTTCATGAT
GTATGTACGTGTGCATCCATGAAAAATCGCAGGCATATCCAAGCGACGAG
GATGCTCCTTCAAGAACACACGGCTTGCGAACACCGCCGCCCGTACCATC
ATCATCGGATGCTCTCGCCAAAGAAGCGCTGAGTATCTTGAGCCAACCGG
AAAAGGACCGCATAATCTTGCTCATGCACGCGAAGCTACGGCACCTGGTG
AGTAAGTGAGAGTGGGATGAGAGCAGGGAGCTGCAATTTTGGCTGTGCAG
GTGCTGTAGCTACTATTATCGTAGTCTAGCTGTTTGGCTTACAGGCAATC
CGTGACAACATGCACCGTCTACATGAGTTTTCCAGTTCAAATGGCTTTAG
TCGTTCCTGGTTTAGTCAAAGCAGTGTGGTGCATGCTGTATCGTCTAGTA
TGCGCCCGAAAAACAAGTGTTCGTCTTGTCCAATTATACATGCACACATA
CATGTCGTCTGGCACAGCAGATAATGTACTGAAAATATTTATTTGCGCAA
GTAGACAAAGCTCGTACGAACATACAGTGTTCGCACCCCTCACGGTGACC
CACCTTACTTACCACATCACCATAGTTCCCTCACGCGGAGTATGTAGTGT
GATTTTTGGCCAACAATCTGAAAAAAAAAAAATCTCCTTCCGAAAAAATT
GACCAATCAGAAAACTAAGGGTACCTTTTCTCTCTCTACTGCTGTTCTCG
ACGAAAAACGCATGCCAGAGCCATCGGGCGGAGGACGCACGCTCCGTCTC
GGAGCGCAAGGTATGCTGCCTGGAGAGGGCACACCGCGACGCCCTCCGGG
AGCGTATGCTCTCCGAGCAGCGGTTACGGGAAGAGCTGCGTCAATGGAAG
CACCACCACCCCGAGGTGATATATGTTTTTTTTTTTGCTTGGGGGAGGGA
CCGGCATGCCGGGGGGGCAGGGTTGCAGCCATTCCACCCCCGCCGGTGTT
CTGTCCGGCAGAGGTTCCGTCCTATCGGCTTTTGACACGGGACATCGACT
AAGGGAGGAACGGGGGTTTTGAGAGGGAGGGAGGGAGGGAGGGGTGGAAA
AGGCTAGGCCTGTTCCTTGTTCGCACATTCCTGTTGGACTTGGTGCCTAT
CTTTCCCCGGTCCCTCACATCAAGCCCGTTTCAATAACCCCTCCTTGCCG
GCGGTGGAAACCTCCGTCCGCTCGGTTGCGACTGCTGCTGCTGCTGTCTG
CGAAATGAAATTGAACGACGCTACCAAGGTGGCTGAGCTGAGGTCGGAGA
ACCAGCGTTTGCGCGAGGAAAAGGACCACAGCCAGCGGCAATACTTGGCA
GTCTTGGGGAAACTCGCCAGGAGACAGACGTTGCTAAAGACGTCGCTGTG
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1554:26614..28764+

>mRNA_E-siliculosus-1a_F_contig1554.3210.1 ID=mRNA_E-siliculosus-1a_F_contig1554.3210.1|Name=mRNA_E-siliculosus-1a_F_contig1554.3210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1554:26614..28764+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCACGAGGGAGCCACCGTCGAGCATATCTGGGCTCAAGACAAAGTA
CTTTCAGCATGTCCTAGATGACCACGAGGGAGCCACCGTCGAGCATATCT
GGGCTCAAGACAAAGTACTTTCAGCATGTCCTAGATGTGTCGTCGACGGA
GCCGTCGTTGTCATCATCATCATCATCATCATCATCATCAGAGGCAGCCG
TGCGCTGGGATCAGCCTACACGCAGGACAGAAAGTACTTGCCGAGCTACC
ATGATGGGGTGTGCTTGTTGTGGCGATACGAAGGAGATGTGTCGTCGACG
GAGCCGTCGTTGTCATCATCATCATCATCATCATCATCATCAGAGGCAGC
CGTGCGCTGGGATCAGCCTACACGCAGGACAGAAAGTACTTGCCGAGCTA
CCATGATGGGGTGTGCTTGTTGTGGCGATACGAAGGAGGCATATCCAAGC
GACGAGGATGCTCCTTCAAGAACACACGGCTTGCGAACACCGCCGCCCGT
ACCATCATCATCGGATGCTCTCGCCAAAGAAGCGCTGAGTATCTTGAGCC
AACCGGAAAAGGACCGCATAATCTTGCTCATGCACGCGAAGCTACGGCAC
CTGGCATATCCAAGCGACGAGGATGCTCCTTCAAGAACACACGGCTTGCG
AACACCGCCGCCCGTACCATCATCATCGGATGCTCTCGCCAAAGAAGCGC
TGAGTATCTTGAGCCAACCGGAAAAGGACCGCATAATCTTGCTCATGCAC
GCGAAGCTACGGCACCTGAGCCATCGGGCGGAGGACGCACGCTCCGTCTC
GGAGCGCAAGGTATGCTGCCTGGAGAGGGCACACCGCGACGCCCTCCGGG
AGCGTATGCTCTCCGAGCAGCGGTTACGGGAAGAGCTGCGTCAATGGAAG
CACCACCACCCCGAGAGCCATCGGGCGGAGGACGCACGCTCCGTCTCGGA
GCGCAAGGTATGCTGCCTGGAGAGGGCACACCGCGACGCCCTCCGGGAGC
GTATGCTCTCCGAGCAGCGGTTACGGGAAGAGCTGCGTCAATGGAAGCAC
CACCACCCCGAGCGTTTGCGCGAGGAAAAGGACCACAGCCAGCGGCAATA
CTTGGCAGTCTTGGGGAAACTCGCCAGGAGACAGACGTTGCTAAAGACGT
CGCTGTGACGTTTGCGCGAGGAAAAGGACCACAGCCAGCGGCAATACTTG
GCAGTCTTGGGGAAACTCGCCAGGAGACAGACGTTGCTAAAGACGTCGCT
GTGA
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