mRNA_E-siliculosus-1a_F_contig1552.3197.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A6H5KAR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAR2_9PHAE) HSP 1 Score: 589 bits (1518), Expect = 1.350e-192 Identity = 388/574 (67.60%), Postives = 395/574 (68.82%), Query Frame = 3
Query: 201 LTLPGAPGTRMSRGSEKAALSSAVGMQRSRWCDRSARGARRTRAWVPGLAASXXXXXXXXXXXXXXXXXXXXENVDWEKIKPEPGQEPXXXXXXXXGKEAPEMPPAPPGLSKLDPRERLTAYAGMLDWEPMDLDEEEEKEKTYEDLNKEMGDEWLANKLQSALRKSQNRNVQSNVNKAYINEWLDDEKEKLEETAEDLKEAYRKDAERIKKKMMEEFDKEARVMDIKVANIIARGKSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGEDATKGEGLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQGVIRVAKAKGVSFTTVRVSKLLAEDRGAIDPMPLIVPRNTPRADGGRSTLPAASRSVAANTIFRASYQ 1439
+T PGAPGTRMSRGSEKA LSSAVGMQRSRWCDRS GARRTRAWVPGLAASXXXXXXXXXXXXXXXXXXXX NV+W KIKPEPGQEP GKEAPEMPPAPPGLSKLDPRERLTAYAGMLDWEPMDLDEEEEKEKTYEDL+KEMGDEWLANKLQSALRKSQNRNVQSNVNKAYI EWLD+EKEKL+ETAEDLKEAYRKDAERIKK+MMEEFDKEARVMDIKVANIIARGKSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELG GGG EDATKGEGLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFP ESTAEQ VIRVAKAKGVSFTTVRVSKLLAEDRGAIDPMPLIVPRN+PRADGGRSTLPAASRSVAANTIFRASYQ
Sbjct: 61 VTRPGAPGTRMSRGSEKAVLSSAVGMQRSRWCDRSTGGARRTRAWVPGLAASXXXXXXXXXXXXXXXXXXXXXNVNWGKIKPEPGQEPDWDKILPKGKEAPEMPPAPPGLSKLDPRERLTAYAGMLDWEPMDLDEEEEKEKTYEDLSKEMGDEWLANKLQSALRKSQNRNVQSNVNKAYIKEWLDEEKEKLDETAEDLKEAYRKDAERIKKRMMEEFDKEARVMDIKVANIIARGKSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELGVAPPSSEGSPDTVTLEERNQMEAEMRTLSPADVIKQASAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGDGEDGPLGAAVLALFEEEVAGVGEKGAARVSSVSGVPLSAAKGLGGEGGGDGDVRAALEGVKTLVIVPGDPGSKKKKGGVXXXXXXXXXGGGAEDATKGEGLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPAESTAEQAVIRVAKAKGVSFTTVRVSKLLAEDRGAIDPMPLIVPRNSPRADGGRSTLPAASRSVAANTIFRASYQ 634
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: D7FK21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK21_ECTSI) HSP 1 Score: 536 bits (1380), Expect = 4.840e-175 Identity = 314/395 (79.49%), Postives = 328/395 (83.04%), Query Frame = 3
Query: 417 ENVDWEKIKPEPGQEPXXXXXXXXGKEAPEMPPAPPGLSKLDPRERLTAYAGMLDWEPMDLDEEEEKEKTYEDLNKEMGDEWLANKLQSALRKSQNRNVQSNVNKAYINEWLDDEKEKLEETAEDLKEAYRKDAERIKKKMMEEFDKEARVMDIKVANIIARGKSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELGGGGGEDATKGEGLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQGVIRVAKAKGVSFTTVRVSKLLAEDRGAIDPMPLIVPRNTPRADGGRSTLPAASRSVAANT--------IFRASYQRFLRFLFQ***LPLKKHGRRQRPVCIFQGEMEFFREKAGGKAQLDF 1577
ENVD KIKPEPGQEP GKEAPEMPPAPPGLSKLDPRERLTAYAGMLDWEPMDLDEEEEKEKTYEDLNKEMGDEWLANKLQSALRKSQNRNVQSNVNKAYINEWLD+EKEKL+ETAEDLKEAYRKDAERIKKKMMEEFDKEARVMDIKVANIIARG+SNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELGGGGGEDA KGEGLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQGVI VAKAKG SFTTVRVSKLL +DRGAIDPMPLIVPRN PRADG R P AS +V +F +S P++K + R +G+ FF +K + F
Sbjct: 46 ENVDGGKIKPEPGQEPDWDKILPKGKEAPEMPPAPPGLSKLDPRERLTAYAGMLDWEPMDLDEEEEKEKTYEDLNKEMGDEWLANKLQSALRKSQNRNVQSNVNKAYINEWLDEEKEKLDETAEDLKEAYRKDAERIKKKMMEEFDKEARVMDIKVANIIARGRSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELGGGGGEDAAKGEGLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQGVIPVAKAKGGSFTTVRVSKLLGQDRGAIDPMPLIVPRNIPRADG-RQVYPPASVAVRGGKHHLQGLLPVFSSSLVS----------APVEKTWAKTRTGMYSRGKWNFFEKKPEARRNSTF 429
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: L1JPC0_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JPC0_GUITC) HSP 1 Score: 115 bits (287), Expect = 2.480e-25 Identity = 74/187 (39.57%), Postives = 102/187 (54.55%), Query Frame = 1
Query: 1549 KPEARRNSTFAVSDFPTSWPVPSSGWVDELLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEARRAGLYFDPSQTKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWI 2109
+P A S + + ++P + W DE L+L GPEL R P L S T WA W + G+GLTT VK+ E A L F P ++ + S KEE+EAE +K SK R + KEGGV+++VED+P+PRVR +R NMG +T++KE SE++IL L+KDV WI
Sbjct: 28 QPSALNASMSIIGEKSANFPTQTE-WDDEFLRLDGPELFREP-------LGSVSATACMDWVKTSWAPRWEKSGSGLTTPVKIV--ETANGVQLVFRPPKSNFVSFKEEKEAEKAR----EKGDMDEKNSKFRQVTDKEGGVEVVVEDKPFPRVRALRCNMGEETVIKETSEKIILSSLRKDVSAWI 200
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A7S0EUV0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EUV0_9CRYP) HSP 1 Score: 113 bits (283), Expect = 2.260e-22 Identity = 75/189 (39.68%), Postives = 104/189 (55.03%), Query Frame = 1
Query: 1567 NSTFAV-----SDFPTSWPVPSSGWVDELLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEARRAGLYFDPSQTKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWIVKQ 2118
N+T ++ ++FPT + W DE L+L GPEL R P+ S + W WA W + G+GLTT VK+ E A L F P ++ + S KEE+EAE +K SK R + KEGGV+++VED+PYPRVR +R NMG T++KE SE++IL L+KDV WI +
Sbjct: 358 NATMSIIGEKSANFPTQ-----AEWDDEFLRLDGPELFREPLG------SVSASACIDWV-KASWAPRWEKSGSGLTTPVKIV--ETADGVQLVFRPPKSSFVSFKEEKEAEKAR----EKGDLDEKNSKFRPVTDKEGGVEVVVEDKPYPRVRALRCNMGEDTVIKETSEKIILSSLRKDVSAWIASR 528
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A6V1PHC2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PHC2_HETAK) HSP 1 Score: 105 bits (262), Expect = 2.070e-19 Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 1567 NSTFAVSDFPTSWPVPSSGWVDELLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEARRAGLYFDPSQT-KYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDV 2097
N+TF+V+ P S P D+ LKL GPE+ R PV G EG AW L EWA W + G+GLTT VK+ + ++ L F PS++ + + KEE+E E K++G + P + K +GG+DI++E PYPR+RV R + GP T+VKEMSE IL +L+KDV
Sbjct: 556 NATFSVASAPGSGPALPGDLDDQFLKLRGPEVWRRPVDT---GGEEGGRVSAAW--LAEWAARWDQPGSGLTTPVKI--TQLSQGVKLEFVPSKSGDFSTFKEEKEQEKA-----KEKGKAVPNKGATS--KDQGGLDILLETIPYPRIRVSRCSYGPGTVVKEMSEDTILKQLQKDV 719
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A7S0MNM1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNM1_9CRYP) HSP 1 Score: 102 bits (253), Expect = 8.450e-19 Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 1624 WVDELLKLTGPELLR-----IPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEARRAGLYFDPSQTKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTW 2106
W DE LKL GPE+ R +P A + L E WA W ++G GLTT V + V L F P Q+ + S KEER+ E + + PP+ L + EGGV+++VE+RP RVRV+R MG +T+VKE SE+++LD L KDV+ W
Sbjct: 326 WDDEFLKLDGPEIWRWPLGPVPAAACRDWLQES------------WAPRWIKKGNGLTTPVSLTVTPLG--VQLVFKPPQSGFVSFKEERDRERARDRGDEPPPGAAPPAGPAGLRQLEGGVEVVVEERPAGRVRVLRCAMGEETVVKETSERILLDSLIKDVQAW 477
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A7S2BWW7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWW7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.830e-17 Identity = 65/181 (35.91%), Postives = 92/181 (50.83%), Query Frame = 1
Query: 1567 NSTFAVSDFPTSWPVPSSGWVDELLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEARRAGLYFDPSQTKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWI 2109
NSTF++++ + + W D LKL GPELLR +PA G+ A ++ EW++ W + G+GLTT V V E GLYF P Y S EE++ + K P +R L EGG++++VE P PR+R R +VKEMSE IL +L+ D+ WI
Sbjct: 90 NSTFSIANDAKAGVTNQAVWDDLFLKLDGPELLRTLLPA-------GTSASAATEWMAEWSKRWEKPGSGLTTPVVVKATGEGG-VGLYFSPKVNDYVSQAEEKKLKEAAEIGGKPGDKPKPMKVSRAGL--EGGIEVLVEAEPSPRIRAKRIAYKEGAVVKEMSESEILRRLEDDLGRWI 260
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A7S2SFK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFK3_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.300e-17 Identity = 60/166 (36.14%), Postives = 85/166 (51.20%), Query Frame = 1
Query: 1624 WVDELLKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEARRAGLYFDPSQTKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWIVKQP 2121
W D L+L GPELLR+P+PA + +A +L EWA W G+GLTT V+V + + F P + + SA+EE+E E G S R + +EGGV I+VE P PR+R R + +KEMSE+ IL L++D+ +W P
Sbjct: 9 WDDMFLRLDGPELLRMPLPAA-------ASPENAKVWLGEWAARWKRPGSGLTTPVEVRTTDTG--VSILFAPKTSSFVSAREEKEQET----------GQGKASPKRLRVGQEGGVQILVEAVPTPRIRARRFAYAEEAPLKEMSEKDILRSLQRDLASWTKNMP 155
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A835YK07_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK07_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.430e-16 Identity = 66/182 (36.26%), Postives = 91/182 (50.00%), Query Frame = 1
Query: 1564 RNSTFAVSDFPTSWPVPSSGWVDELLKLTGPE-LLRIPVPATFEGLSEGSGTFHAWAFLREWAQLWTEEGTGLTTRVKVFVDEEA----RRAGLYFDPSQTKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKD 2094
RN+T ++ + P + W D LK+ GPE LLR+P+ + A F+REWAQLWT G+GLTT V V A R + F P+ + S+KEER AE + +G EGGV +VE PYPR+RVVRA + +KEMSE I+ + ++D
Sbjct: 513 RNATASIVSAAAAAPPTQALWTDLFLKMQGPEQLLRVPLADVMP--KDRVDVTAAAIFMREWAQLWTRAGSGLTTPVTVATSPRAPNGSERVEILFRPTANAFVSSKEERAAERA-----RDKGEGXXXXXXXRRGAHEGGVIFLVEALPYPRIRVVRAPLSDGAALKEMSESAIVSRFQRD 687
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Match: A0A7S1BSH5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSH5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 8.200e-15 Identity = 80/193 (41.45%), Postives = 104/193 (53.89%), Query Frame = 1
Query: 1549 KPEARRNSTFAVSDFPTSWPVPS--SGWVDEL-LKLTGPELLRIPVPATFEGLSEGSGTFHAWAFLREWA-QLWTEEGTGLTTRVKVF-VDEEARRAGLYFDPSQ-TKYRSAKEEREAEXXXXXXXKKRGSSGPPSKTRNLLKKEGGVDIIVEDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWI 2109
+P AR N+T + P S+ + G D+L L+L GPELLRI V AT + + T A F+ EWA Q E+ TGLTT+ V D G+ F ++ Y SAKEE+ + GSS K + K+EGGV+I+VED P RVR R NM TIVKEMSE+ IL KL D+K W+
Sbjct: 226 QPHAR-NATLSAVSAPNSFASETITQGQFDDLFLRLDGPELLRIDV-ATQDVDTANLSTLSA--FVGEWAKQFGKEKNTGLTTKATVRRTDRVPFGVGIEFRSTKGNDYASAKEEKARKESEAEG----GSSAFKEKKKE--KREGGVEIVVEDFPSLRVRARRCNMSEDTIVKEMSEETILRKLASDIKIWL 408 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1552.3197.1 >prot_E-siliculosus-1a_F_contig1552.3197.1 ID=prot_E-siliculosus-1a_F_contig1552.3197.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=412bp MSRGSEKAALSSAVGMQRSRWCDRSARGARRTRAWVPGLAASSDDDDDNGback to top mRNA from alignment at E-siliculosus-1a_F_contig1552:12996..23883+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1552.3197.1 ID=mRNA_E-siliculosus-1a_F_contig1552.3197.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10888bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1552:12996..23883+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1552:12996..23883+ >mRNA_E-siliculosus-1a_F_contig1552.3197.1 ID=mRNA_E-siliculosus-1a_F_contig1552.3197.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2472bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1552:12996..23883+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |