mRNA_E-siliculosus-1a_F_contig1541.3140.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1541.3140.1
Unique NamemRNA_E-siliculosus-1a_F_contig1541.3140.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3140.1 vs. uniprot
Match: A0A6H5JDE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE9_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 5.220e-64
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 2 
Query:  881 MFRGRGGIKYAMFNDSHLLHNKVVNGDLLGAQ-ELVNAGVSVNGNPRLLRDIPLILATVKGRIRIAEFLIARGANLESACLEDVVNENNGEMSARKGTRALHLSSSPDMTSVLLKAGACPNATDADGCTPLMRAVENPK 1294
            MFRGRGGIKYA FND+ LLH KVVNGDLLG + ELVNAGVSVNGNPRLLRDI LIL TVKG IRIAEFLIARGANLESACLEDVVNE  GEMS RKGTRALHLSSSP++TSVLLKAGACP+ATDADGCTPLM   ++ K
Sbjct:    1 MFRGRGGIKYATFNDAQLLH-KVVNGDLLGVKKELVNAGVSVNGNPRLLRDITLILTTVKGHIRIAEFLIARGANLESACLEDVVNEI-GEMSVRKGTRALHLSSSPEITSVLLKAGACPDATDADGCTPLMLTTKDGK 137
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3140.1 vs. uniprot
Match: D8LEI1_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI1_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.800e-56
Identity = 106/121 (87.60%), Postives = 110/121 (90.91%), Query Frame = 2 
Query:  914 MFNDSHLLHNKVVNGDLLGAQELVNAGVSVNGNPRLLRDIPLILATVKGRIRIAEFLIARGANLESACLEDVVNENNGEMSARKGTRALHLSSSPDMTSVLLKAGACPNATDADGCTPLMR 1276
            MFNDS LLH KVVNGDL G QELVNAGVSVNGN R LRDIPLILATV+G IRIA+FLIARGANLESACLEDV NEN GEMSARKGTRALHLSSSP+MTSVLLKAGAC NATDADGCT L+R
Sbjct:    1 MFNDSQLLH-KVVNGDLPGVQELVNAGVSVNGNLRPLRDIPLILATVEGHIRIAKFLIARGANLESACLEDVGNEN-GEMSARKGTRALHLSSSPEMTSVLLKAGACLNATDADGCTSLVR 119
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3140.1 vs. uniprot
Match: D8LME9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-6
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 2 
Query: 1040 ILATVKGRIRIAEFLIARGANLESACLEDVVNENNGEMSARKGTRALHLS---SSPDMTSVLLKAGACPNATDADGCTPLM 1273
            ++A   G++   EFL+ARGA L+S    DV     G +  R G++A+H +    SP +  VLL+ GA PNA D DG TPLM
Sbjct:    1 MVAAGLGKVSFVEFLVARGAGLDSRTCRDVPRPEGGII-LRMGSQAIHAAVHGGSPGVLYVLLRLGANPNAADDDGETPLM 80
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1541.3140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDE9_9PHAE5.220e-6484.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEI1_ECTSI2.800e-5687.60Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LME9_ECTSI1.080e-643.21Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1541contigE-siliculosus-1a_F_contig1541:12249..13602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size474
Model size1356
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
Seed eggNOG ortholog2880.D7FVG9
Seed ortholog evalue5.4e-14
Seed ortholog score84.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.3659668-CDS-E-siliculosus-1a_F_contig1541:12248..127221622928051.3659668-CDS-E-siliculosus-1a_F_contig1541:12248..12722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 12249..12722 -
1696318788.131512-CDS-E-siliculosus-1a_F_contig1541:12248..127221696318788.131512-CDS-E-siliculosus-1a_F_contig1541:12248..12722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 12249..12722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.383722-UTR-E-siliculosus-1a_F_contig1541:12722..136021622928051.383722-UTR-E-siliculosus-1a_F_contig1541:12722..13602Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1541 12723..13602 -
1696318788.1423247-UTR-E-siliculosus-1a_F_contig1541:12722..136021696318788.1423247-UTR-E-siliculosus-1a_F_contig1541:12722..13602Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1541 12723..13602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1541.3140.1prot_E-siliculosus-1a_F_contig1541.3140.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1541 12249..12722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1541.3140.1

>prot_E-siliculosus-1a_F_contig1541.3140.1 ID=prot_E-siliculosus-1a_F_contig1541.3140.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3140.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=158bp
MFRGRGGIKYAMFNDSHLLHNKVVNGDLLGAQELVNAGVSVNGNPRLLRD
IPLILATVKGRIRIAEFLIARGANLESACLEDVVNENNGEMSARKGTRAL
HLSSSPDMTSVLLKAGACPNATDADGCTPLMRAVENPKALAVGMVRELLR
GNADPRLT
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mRNA from alignment at E-siliculosus-1a_F_contig1541:12249..13602-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1541.3140.1 ID=mRNA_E-siliculosus-1a_F_contig1541.3140.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3140.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1541:12249..13602- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTAATGTGGGGGTTACGCGTCGTGCAAGATGGGTATTAGGCAGGGG
CCAGGAGGTGCCGCCTTCAATTCGCGCCCCCCCGGCAGTCTTGCCGCAAC
TCACAGTCTCGTCATATATATCACTTTCCGTCTCTCCGTCTCTGGCCACC
CCAACACGCAACACGATCACAACAGAAGAAGGTAACGGCAGGTGATACAT
CGGTTGCTTGCATGCATGCGCGTCGATATTTGTAAACTTCGCCATTAACA
AGTGACTCTTTTTTGCGTGACGTTCATTCATGAAAAAAAAGATATCATTG
GAGCGCCCGATGTCCCGGTAGAGTAGTGTTACTGCGCCTGCCTGTAGTAG
AGCGACAGGTGAACGAAACGCATACACACATGTTCGTGACGCTAGTTCCT
CACACAGGACTTCCGTCGGTAAAAAATGTGTGGGTGCATGGCTTACATGC
GTCCCTGTGGGTGCGTAAAATTTGTTGGATACTTTCTGAGAGCGTGCTCT
GTCTGGGAGTGGGAGCCTTTTGGTTCTGGGTGCGCCAAGTATGTAAGAGT
TTAATTCTGCAAGTTCAAGGTTACCGGGGGGTTACGCGCGGTACCAGGCT
CATTGATATCGTCGACTACTGGATCTGAGTTGTAGGCGTGGTACAGGAGC
TGAAGCACCGGTACTCGTACCGTCACCCTGGTCTGCGAGTGACTGCAGCT
GCTGCTGTTGTCATGTTTCGAAAATATCTGTTCCAACGTCCCCGCTTGTT
TGCTATATGTAGACTACTCCGAGTAGTAGAGATGAACGATGGGAGTGTCC
ACACCACAACCCCCAGATCTAACGCAACGCCCTGCGTGCTTCTACATTGT
GCAGGTCACCTTCTCTTAAGCTGTTAAGCCATGTTCCGTGGCAGAGGGGG
AATAAAGTATGCAATGTTCAATGACTCACACCTACTGCACAACAAGGTGG
TGAACGGGGACTTGCTGGGTGCCCAGGAGTTGGTGAATGCTGGAGTGAGT
GTAAACGGCAATCCACGCCTCCTGCGAGACATCCCGCTCATCCTCGCTAC
CGTGAAAGGTCGTATCCGCATCGCTGAGTTCCTGATCGCAAGAGGAGCCA
ACCTAGAGTCGGCCTGCCTTGAAGACGTTGTAAACGAAAATAATGGAGAA
ATGTCCGCGAGGAAAGGGACGCGCGCACTTCATCTTTCCTCCAGCCCTGA
CATGACCTCTGTGTTGCTGAAGGCTGGCGCATGTCCCAACGCCACGGACG
CGGACGGGTGCACCCCTCTCATGCGAGCTGTCGAAAATCCAAAGGCCCTG
GCGGTGGGGATGGTACGAGAGCTGCTCAGGGGAAATGCCGACCCCAGGTT
GACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1541:12249..13602-

>mRNA_E-siliculosus-1a_F_contig1541.3140.1 ID=mRNA_E-siliculosus-1a_F_contig1541.3140.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3140.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1541:12249..13602- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCCGTGGCAGAGGGGGAATAAAGTATGCAATGTTCAATGACTCACA
CCTACTGCACAACAAGGTGGTGAACGGGGACTTGCTGGGTGCCCAGGAGT
TGGTGAATGCTGGAGTGAGTGTAAACGGCAATCCACGCCTCCTGCGAGAC
ATCCCGCTCATCCTCGCTACCGTGAAAGGTCGTATCCGCATCGCTGAGTT
CCTGATCGCAAGAGGAGCCAACCTAGAGTCGGCCTGCCTTGAAGACGTTG
TAAACGAAAATAATGGAGAAATGTCCGCGAGGAAAGGGACGCGCGCACTT
CATCTTTCCTCCAGCCCTGACATGACCTCTGTGTTGCTGAAGGCTGGCGC
ATGTCCCAACGCCACGGACGCGGACGGGTGCACCCCTCTCATGCGAGCTG
TCGAAAATCCAAAGGCCCTGGCGGTGGGGATGGTACGAGAGCTGCTCAGG
GGAAATGCCGACCCCAGGTTGACCATGTTCCGTGGCAGAGGGGGAATAAA
GTATGCAATGTTCAATGACTCACACCTACTGCACAACAAGGTGGTGAACG
GGGACTTGCTGGGTGCCCAGGAGTTGGTGAATGCTGGAGTGAGTGTAAAC
GGCAATCCACGCCTCCTGCGAGACATCCCGCTCATCCTCGCTACCGTGAA
AGGTCGTATCCGCATCGCTGAGTTCCTGATCGCAAGAGGAGCCAACCTAG
AGTCGGCCTGCCTTGAAGACGTTGTAAACGAAAATAATGGAGAAATGTCC
GCGAGGAAAGGGACGCGCGCACTTCATCTTTCCTCCAGCCCTGACATGAC
CTCTGTGTTGCTGAAGGCTGGCGCATGTCCCAACGCCACGGACGCGGACG
GGTGCACCCCTCTCATGCGAGCTGTCGAAAATCCAAAGGCCCTGGCGGTG
GGGATGGTACGAGAGCTGCTCAGGGGAAATGCCGACCCCAGGTTGACC
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