mRNA_E-siliculosus-1a_F_contig1541.3139.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1541.3139.1
Unique NamemRNA_E-siliculosus-1a_F_contig1541.3139.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.080e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   19 VSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            VSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP
Sbjct:   75 VSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 113
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A0B1S663_OESDE (CAF1C_H4-bd domain-containing protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1S663_OESDE)

HSP 1 Score: 72.0 bits (175), Expect = 1.560e-15
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 HNNSNDVSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            H +SN V A++   EEK+I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:   13 HEDSNMVEASDGSMEEKVINEEYKIWKKNTPFLYDMVMTHALEWP 57
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A2P4YCE2_9STRA (Histone-binding protein RBBP4 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCE2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.540e-14
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   16 DVSAANEEA-EEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            DV+AAN+ A +EK+I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:   22 DVAAANDAALQEKLINEEYKIWKKNTPFLYDLVMTHALEWP 62
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A673T3Y0_SURSU (CAF1C_H4-bd domain-containing protein n=1 Tax=Suricata suricatta TaxID=37032 RepID=A0A673T3Y0_SURSU)

HSP 1 Score: 67.4 bits (163), Expect = 1.000e-13
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   16 DVSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            D  AA ++AEE++I EEYK+WKKNTPFLY +VMTHALEWP
Sbjct:   17 DKEAAFDDAEERVINEEYKIWKKNTPFLYHLVMTHALEWP 56
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A8D2MWC2_ZONAL (CAF1C_H4-bd domain-containing protein n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MWC2_ZONAL)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-13
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   19 VSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            ++A ++  EE++I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:   12 IAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP 50
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A3P7IJ28_STRVU (CAF1C_H4-bd domain-containing protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7IJ28_STRVU)

HSP 1 Score: 67.8 bits (164), Expect = 1.270e-13
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   19 VSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            V A++   EEK+I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:   19 VEASDGSMEEKVINEEYKIWKKNTPFLYDMVMTHALEWP 57
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A667X9F6_9TELE (Histone-binding protein RBBP4-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667X9F6_9TELE)

HSP 1 Score: 67.0 bits (162), Expect = 2.250e-13
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   19 VSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
             SA ++  EE++I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:   12 ASAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP 50
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A1S0UFZ1_LOALO (CAF1C_H4-bd domain-containing protein n=2 Tax=Onchocercidae TaxID=6296 RepID=A0A1S0UFZ1_LOALO)

HSP 1 Score: 65.9 bits (159), Expect = 2.640e-13
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   28 ANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            A E  EE++I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:    2 AEEGYEERLINEEYKIWKKNTPFLYDMVMTHALEWP 37
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A669BZA1_ORENI (CAF1C_H4-bd domain-containing protein n=17 Tax=Euteleostomi TaxID=117571 RepID=A0A669BZA1_ORENI)

HSP 1 Score: 65.9 bits (159), Expect = 3.790e-13
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   16 DVSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            +  A ++  EE++I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:    5 EAGAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP 44
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BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Match: A0A0B1SYT1_OESDE (CAF1C_H4-bd domain-containing protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1SYT1_OESDE)

HSP 1 Score: 69.3 bits (168), Expect = 4.060e-13
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   10 SNDVSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWP 135
            SN V A++   EEK+I EEYK+WKKNTPFLYD+VMTHALEWP
Sbjct:   47 SNMVEASDGSMEEKVINEEYKIWKKNTPFLYDMVMTHALEWP 88
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1541.3139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAT4_9PHAE1.080e-17100.00CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A0B1S663_OESDE1.560e-1571.11CAF1C_H4-bd domain-containing protein n=1 Tax=Oeso... [more]
A0A2P4YCE2_9STRA7.540e-1478.05Histone-binding protein RBBP4 n=1 Tax=Phytophthora... [more]
A0A673T3Y0_SURSU1.000e-1372.50CAF1C_H4-bd domain-containing protein n=1 Tax=Suri... [more]
A0A8D2MWC2_ZONAL1.170e-1369.23CAF1C_H4-bd domain-containing protein n=1 Tax=Zono... [more]
A0A3P7IJ28_STRVU1.270e-1374.36CAF1C_H4-bd domain-containing protein n=1 Tax=Stro... [more]
A0A667X9F6_9TELE2.250e-1371.79Histone-binding protein RBBP4-like n=1 Tax=Myripri... [more]
A0A1S0UFZ1_LOALO2.640e-1377.78CAF1C_H4-bd domain-containing protein n=2 Tax=Onch... [more]
A0A669BZA1_ORENI3.790e-1367.50CAF1C_H4-bd domain-containing protein n=17 Tax=Eut... [more]
A0A0B1SYT1_OESDE4.060e-1373.81CAF1C_H4-bd domain-containing protein n=1 Tax=Oeso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1541contigE-siliculosus-1a_F_contig1541:6260..6406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size147
Model size147
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelPeronosporales
COG Functional cat.B
EggNOG OGs3Q9Y0@4776,KOG0264@1,KOG0264@2759
EggNOG free text desc.Histone-binding protein RBBP4 or subunit C of CAF1 complex
GOsGO:0000003,GO:0000070,GO:0000118,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002064,GO:0002065,GO:0002066,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007379,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008283,GO:0008284,GO:0008285,GO:0008406,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016580,GO:0016581,GO:0016584,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030261,GO:0030308,GO:0030703,GO:0030707,GO:0030855,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031523,GO:0031974,GO:0031981,GO:0032221,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032989,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033698,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035035,GO:0035097,GO:0035098,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042766,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046661,GO:0046689,GO:0046983,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060429,GO:0061458,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070210,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070822,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0097659,GO:0098654,GO:0098687,GO:0098732,GO:0098813,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990483,GO:1990837,GO:2000112,GO:2000113,GO:2001141
KEGG Pathwayko04218,map04218
KEGG koko:K10752,ko:K11659
Preferred nameRBBP4
Seed eggNOG ortholog4787.PITG_11170T0
Seed ortholog evalue9.5e-10
Seed ortholog score68.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.3221874-CDS-E-siliculosus-1a_F_contig1541:6259..64061622928051.3221874-CDS-E-siliculosus-1a_F_contig1541:6259..6406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 6260..6406 -
1696318788.1191902-CDS-E-siliculosus-1a_F_contig1541:6259..64061696318788.1191902-CDS-E-siliculosus-1a_F_contig1541:6259..6406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1541 6260..6406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1541.3139.1prot_E-siliculosus-1a_F_contig1541.3139.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1541 6260..6406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1541.3139.1

>prot_E-siliculosus-1a_F_contig1541.3139.1 ID=prot_E-siliculosus-1a_F_contig1541.3139.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3139.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=49bp
HNNSNDVSAANEEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWPRCV*
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mRNA from alignment at E-siliculosus-1a_F_contig1541:6260..6406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1541.3139.1 ID=mRNA_E-siliculosus-1a_F_contig1541.3139.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3139.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1541:6260..6406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACAACAACAGCAACGACGTCAGCGCCGCCAACGAGGAGGCGGAGGAGAA
GATGATTACGGAGGAGTACAAAGTCTGGAAGAAAAACACGCCGTTCTTGT
ACGACGTAGTCATGACCCACGCCCTGGAGTGGCCGAGGTGTGTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1541:6260..6406-

>mRNA_E-siliculosus-1a_F_contig1541.3139.1 ID=mRNA_E-siliculosus-1a_F_contig1541.3139.1|Name=mRNA_E-siliculosus-1a_F_contig1541.3139.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1541:6260..6406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACAACAACAGCAACGACGTCAGCGCCGCCAACGAGGAGGCGGAGGAGAA
GATGATTACGGAGGAGTACAAAGTCTGGAAGAAAAACACGCCGTTCTTGT
ACGACGTAGTCATGACCCACGCCCTGGAGTGGCCGAGGTGTGTGTGACAC
AACAACAGCAACGACGTCAGCGCCGCCAACGAGGAGGCGGAGGAGAAGAT
GATTACGGAGGAGTACAAAGTCTGGAAGAAAAACACGCCGTTCTTGTACG
ACGTAGTCATGACCCACGCCCTGGAGTGGCCGAGGTGTGTGTGA
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