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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1540.3131.1 vs. uniprot
Match: D8LAT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAT0_ECTSI) HSP 1 Score: 416 bits (1068), Expect = 1.430e-140 Identity = 254/308 (82.47%), Postives = 255/308 (82.79%), Query Frame = 1
Query: 1 MPPEPELAHPSFSRRASNTSAASSSSXXXXXEKAHAKSLRNAGKEAFLTVVRETVQELGLDAANEAIEEEAIRMEEMQTRRSGSSRSFHHKRTASRGSNHDLITPTSHGRPGLGASQDSACGSPFRSSTSSRTAGSGRRSSTGGHHGVGVDAAEPSERRXXXXXXXXMGQGEGQSIVAAAMANFEGGVGATPGAIPEEGRDLSRSFQGSYSADPGDDAAAAEAAVGRPAXXXXXXXGEATSFRNTAETMEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPNPSPT 924
MPPEPELAHPSFSRRASNTSAASSS XXXXXEKAHAKSLRNAGKEAFLTVVRETVQELGLDAANEAIEEEAIRMEEMQT SQDSACGSPFRSSTSSRTAGSGRRSSTGGHHGVGVD AEPSERR M QGEGQSIVAAAMANF GGV A PGAIPEEGR LSRSFQGS SADPGDD+AAAEAAVGRPAXXXXXX GEATSFRNTAETMEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPNPSPT
Sbjct: 1 MPPEPELAHPSFSRRASNTSAASSSXXXXXXEKAHAKSLRNAGKEAFLTVVRETVQELGLDAANEAIEEEAIRMEEMQT------------------------------------SQDSACGSPFRSSTSSRTAGSGRRSSTGGHHGVGVDTAEPSERRRRRHRKSSMAQGEGQSIVAAAMANFGGGVDANPGAIPEEGRVLSRSFQGSDSADPGDDSAAAEAAVGRPAXXXXXXGGEATSFRNTAETMEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPNPSPT 272
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 924 |
| Model size | 924 |
| Exons | 4 |
| Ec32 ortholog | Ec-27_006480.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1540.3131.1 >prot_E-siliculosus-1a_F_contig1540.3131.1 ID=prot_E-siliculosus-1a_F_contig1540.3131.1|Name=mRNA_E-siliculosus-1a_F_contig1540.3131.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp
MPPEPELAHPSFSRRASNTSAASSSSRTSSAEKAHAKSLRNAGKEAFLTV
VRETVQELGLDAANEAIEEEAIRMEEMQTRRSGSSRSFHHKRTASRGSNH
DLITPTSHGRPGLGASQDSACGSPFRSSTSSRTAGSGRRSSTGGHHGVGV
DAAEPSERRRRRHRKSSMGQGEGQSIVAAAMANFEGGVGATPGAIPEEGR
DLSRSFQGSYSADPGDDAAAAEAAVGRPAAAAADGGGEATSFRNTAETME
DDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQ
AMPNPSPT back to topmRNA from alignment at E-siliculosus-1a_F_contig1540:535..3486- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1540.3131.1 ID=mRNA_E-siliculosus-1a_F_contig1540.3131.1|Name=mRNA_E-siliculosus-1a_F_contig1540.3131.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2952bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1540:535..3486- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCCGGAGCCAGAGCTCGCACACCCTTCCTTCTCCCGCCGGGCCAG
CAACACGTCTGCGGCGTCGTCGTCGTCCAGGACATCCTCGGCAGAAAAGG
CTCACGCCAAGTCTCTCAGGAACGCTGGGAAAGAGGTTCGTGCGCGTTCG
ATCGACCCCCTTTGGTCTCTTTCTTTTTCTACGCAACGACAACAAGAGGC
CAGTTGCACGCATATATGCATAGACATAGACATACACGTGGAATAGGAAC
AAATGATTTATTGCTTGTTTCGTGCACGTGTCGTCTGTACGTACTAAAGC
CGAATTTGGGGGCAAACATTCCCTCATGTTGACAAGCTGAATGTTGTGTG
TACAGTGTACAGCAGTGCTGCTGGCGTACGTGGCGTAGCCGTTTGGTGAG
CTCAAAATTCTGTGTGTCGTGCTCTCCTCGCGGAATCACCGGCGGTACTG
AATGCTGCTGTCAGGTCGTGCATTCGCAAGTGTTTTCAGTTGTAGTGGCA
CGCCACTTTTTCATTTTTCATCGATCGTTGTAGGATTTGGATCCCGCGCT
GCGCCTAGGGAGTCCGTGGTCCTGCTAGCCTTTACGCCAACCGTACATAG
ATGCTCCTGCAATGCGTTGTATGCGTGCGATACCTTTTGGTGCTTGTTTT
CGTACGGAAACAACACGAAATGCATTTCCACCAGTACACATGAAGTGGTA
GCTCGTTACTGATGCGGCTGGTGCTGCGAATGGTTACTGCTTCACACGGT
GAAGGAAAGGAGAACAAAGGCATGTGGCTGCTGTACAGCTGAAGTGTTCC
CCCCGTATTTTGTGACAGCAGTTCCCTGCGGTCGCGTCTTTCCTGGGTTA
CAAAGTTCGCCAGACGAAATATCTCGTACCCTCGTGTGTGCATCGGGTTG
ATATTTGTGCGTCGTTAGCGGTACAGCAGTGTCGTTGTAAAGGATGCTCT
CCGGGTGTGCGGAAATTCGTGTAGCTAACGAATCCCGCTGGCAGTGGAAA
GAGCGACACAATCATCACGGAGACAGCTGGAGAGTGCCGGGCTTCGCCAC
ATTGTGTATATGTGCAGACATCGGCCGACGCAGTTGCGCACGGCTTCTGC
GTGGTTAGGTTTCACAACACCCAGTAGCAACAGCAACGTCGATGTTGTGC
CCTGCGTTGGGTTGGGACCTACGCTGATACATATGTCTTGCCGAGGTCCG
TCCGCCGCCACTGCCGAACCCTTCCTTCCGCTGTCTGATCGACCCAAGGC
TCTATCCTCCAGTTTTTATTTGAGTTGCCAGTCTATCCTCCAGTTTTTAT
TTGAGTTGCTTCTTCTCATCTAGACTGGGTTCAACACTATCCGCACTAAC
GCCGGTGGCACTTGATTAGCGCCGGTTTGTTCGTCGAGAGTTGCCTGTAC
AACTACCGGCCTGCCACTTTCTGCGAAGCACAGGCTTCCACCCACTGCTG
TGCTCCAGCGTGCAGAAGTCCACACTACTGGCTTGTCGTCTGAACTGAAG
TCTCGTTCCCGCCGCCGTCGACGCTGCTGCTCCTGCCTCTTCCTTCATCG
GAAGGCGTTCTTGACGGTGGTGAGGGAAACAGTGCAAGAGCTTGGGCTTG
ACGCGGCCAACGAAGCCATCGAAGAGGAGGCAATCAGGATGGAGGAGATG
CAAACAAGGTACGCATCGGCTCATGTGTGTTTGCGGGGGGCGCCCCTGCG
CACATTCCTGCGTGCAGTTCAACGAAATGAACGCGCTCGCGGGTTGTCTG
TTGGTGACCCAATGACGTTGCACTAGTGTTTGGCTTCTGTCGTTGTTTGC
TCTGCGGCTTCGTTTTGGGTGAGGTCGATTTTATGTTCGTGTGCACCGGC
ACTTTAGCAGATTCGAGACGGCAAGCTTCAACTGTTCAAGATCATCGAGG
CGAAACATGGCTTACCCCCGAACCCCTTTCCTCCCTCCCGGCAACCCCTC
GACCGCCCCTGCCGAAGGCGCTCCGGCAGCAGTCGATCGTTCCATCACAA
ACGAACCGCGAGCCGCGGCAGCAACCATGATCTCATCACCCCAACGTCGC
ACGGCCGGCCCGGCCTCGGCGCCAGCCAAGACTCGGCCTGCGGCTCTCCA
TTCCGGTCCTCAACGTCCTCCCGCACAGCGGGGAGCGGTAGGCGCTCTAG
CACCGGAGGGCATCATGGCGTTGGCGTTGATGCCGCCGAGCCGTCAGAGC
GCCGGCGCCGCCGGCATAGGAAGTCTTCCATGGGGCAGGGAGAGGGGCAG
TCGATCGTCGCCGCGGCGATGGCCAACTTCGAAGGTGGTGTCGGTGCTAC
CCCCGGTGCCATCCCAGAGGAAGGGAGAGACTTGTCGAGGTCGTTCCAGG
GGTCCTATTCTGCCGATCCGGGGGATGATGCGGCTGCTGCTGAGGCTGCG
GTGGGTAGGCCGGCGGCAGCGGCGGCGGATGGGGGAGGCGAGGCTACGTC
GTTCCGGAACACTGCGGAGACGATGGAGGACGACGAGAGAGAGACGCTGT
TGGCGTTGCTCACCGGGGCGTATGGCCAGGTGGGTGGCTGACGGGAGGGA
TAGAGGGTGTGTGTGTGTGTGTGTGTTTCGGAAGGAACGGGGAGTGAACG
AGACGGACTTCACTGACTGGCAGACAGAGAAGACAGATAGACAGTCAAAC
AGAGAAAGGCAGATGGACGGACAGGCAGAGACATTAGACAGAGACAGACA
CTAATATTTGGTTGCACGTTATCACGTAGTCCCGTCAATTAGCACGGCTC
ATTCTTGCGGTGTTGGTTGTTCACCAATCAATATGCTCCTCACCATTGGA
TGCTGTTGACTCCAAACAATACGTATCAGGTGAACGACCTCACGGACGAG
CTCAAGATATCTCTCGACAAGCTCAACGATACGGAGAAGGAGCTCAAGGC
GGTCAACGCTGCCCACGCCAAGCTACAGGCCATGCCCAACCCATCCCCTA
CA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1540:535..3486- >mRNA_E-siliculosus-1a_F_contig1540.3131.1 ID=mRNA_E-siliculosus-1a_F_contig1540.3131.1|Name=mRNA_E-siliculosus-1a_F_contig1540.3131.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1540:535..3486- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCCGGAGCCAGAGCTCGCACACCCTTCCTTCTCCCGCCGGGCCAG
CAACACGTCTGCGGCGTCGTCGTCGTCCAGGACATCCTCGGCAGAAAAGG
CTCACGCCAAGTCTCTCAGGAACGCTGGGAAAGAGATGCCTCCGGAGCCA
GAGCTCGCACACCCTTCCTTCTCCCGCCGGGCCAGCAACACGTCTGCGGC
GTCGTCGTCGTCCAGGACATCCTCGGCAGAAAAGGCTCACGCCAAGTCTC
TCAGGAACGCTGGGAAAGAGGCGTTCTTGACGGTGGTGAGGGAAACAGTG
CAAGAGCTTGGGCTTGACGCGGCCAACGAAGCCATCGAAGAGGAGGCAAT
CAGGATGGAGGAGATGCAAACAAGGCGTTCTTGACGGTGGTGAGGGAAAC
AGTGCAAGAGCTTGGGCTTGACGCGGCCAACGAAGCCATCGAAGAGGAGG
CAATCAGGATGGAGGAGATGCAAACAAGGCGCTCCGGCAGCAGTCGATCG
TTCCATCACAAACGAACCGCGAGCCGCGGCAGCAACCATGATCTCATCAC
CCCAACGTCGCACGGCCGGCCCGGCCTCGGCGCCAGCCAAGACTCGGCCT
GCGGCTCTCCATTCCGGTCCTCAACGTCCTCCCGCACAGCGGGGAGCGGT
AGGCGCTCTAGCACCGGAGGGCATCATGGCGTTGGCGTTGATGCCGCCGA
GCCGTCAGAGCGCCGGCGCCGCCGGCATAGGAAGTCTTCCATGGGGCAGG
GAGAGGGGCAGTCGATCGTCGCCGCGGCGATGGCCAACTTCGAAGGTGGT
GTCGGTGCTACCCCCGGTGCCATCCCAGAGGAAGGGAGAGACTTGTCGAG
GTCGTTCCAGGGGTCCTATTCTGCCGATCCGGGGGATGATGCGGCTGCTG
CTGAGGCTGCGGTGGGTAGGCCGGCGGCAGCGGCGGCGGATGGGGGAGGC
GAGGCTACGTCGTTCCGGAACACTGCGGAGACGATGGAGGACGACGAGAG
AGAGACGCTGTTGGCGTTGCTCACCGGGGCGTATGGCCAGGCGCTCCGGC
AGCAGTCGATCGTTCCATCACAAACGAACCGCGAGCCGCGGCAGCAACCA
TGATCTCATCACCCCAACGTCGCACGGCCGGCCCGGCCTCGGCGCCAGCC
AAGACTCGGCCTGCGGCTCTCCATTCCGGTCCTCAACGTCCTCCCGCACA
GCGGGGAGCGGTAGGCGCTCTAGCACCGGAGGGCATCATGGCGTTGGCGT
TGATGCCGCCGAGCCGTCAGAGCGCCGGCGCCGCCGGCATAGGAAGTCTT
CCATGGGGCAGGGAGAGGGGCAGTCGATCGTCGCCGCGGCGATGGCCAAC
TTCGAAGGTGGTGTCGGTGCTACCCCCGGTGCCATCCCAGAGGAAGGGAG
AGACTTGTCGAGGTCGTTCCAGGGGTCCTATTCTGCCGATCCGGGGGATG
ATGCGGCTGCTGCTGAGGCTGCGGTGGGTAGGCCGGCGGCAGCGGCGGCG
GATGGGGGAGGCGAGGCTACGTCGTTCCGGAACACTGCGGAGACGATGGA
GGACGACGAGAGAGAGACGCTGTTGGCGTTGCTCACCGGGGCGTATGGCC
AGGTGAACGACCTCACGGACGAGCTCAAGATATCTCTCGACAAGCTCAAC
GATACGGAGAAGGAGCTCAAGGCGGTCAACGCTGCCCACGCCAAGCTACA
GGCCATGCCCAACCCATCCCCTACAGTGAACGACCTCACGGACGAGCTCA
AGATATCTCTCGACAAGCTCAACGATACGGAGAAGGAGCTCAAGGCGGTC
AACGCTGCCCACGCCAAGCTACAGGCCATGCCCAACCCATCCCCTACA back to top
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