mRNA_E-siliculosus-1a_F_contig1539.3117.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1539.3117.1
Unique NamemRNA_E-siliculosus-1a_F_contig1539.3117.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1539.3117.1 vs. uniprot
Match: D8LJV2_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV2_ECTSI)

HSP 1 Score: 728 bits (1879), Expect = 1.070e-259
Identity = 393/412 (95.39%), Postives = 399/412 (96.84%), Query Frame = 2 
Query:   74 MQLRRNTVMAAVRLVQPLVKASNARGLASCPLRVHSSSGTSPKASASCAAVQKLLPRAPCRQVTSTTTTQQRQVAEVDDRGQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQYDHAYTLESREERMDVLTSALWRGVYMSDESIKEPHVRVLAEYVDAELADIYAVDVSEFFAVCIEFAPPPTSELKXXXXXXXXXXXXXXXXXXXXXXXAAPGLEGGAADLTAAGRGGGIGEKVRHGDFGSGDGKEGRWRACLAESGKVYYWHTVSREVTWDRPTGAEAYVPSVMPKTDQTLTAAA 1309
            MQLRRNTV+AAVRLV+PLVKASNARGLASCPLRVH+S GTSPKASASCAAVQKLLPRAPCRQVTSTTTTQQRQVAEVDDRGQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQ+DHAYTLESREERMDVLTSALWRGVYMSDESIKEPHVRVLAEYVDAELADIYAVD SEFFAVCIEFAPPPT+ELK  XXXXXXXXXXXXXXXX     AAPGLEGGAAD TAAGRGGGIGEKV HGDFGSGDG+EGRWRACLAESGKVYYWHTVSREVTWDRP GAEAYVPSVMPK DQTLTAAA
Sbjct:    1 MQLRRNTVVAAVRLVRPLVKASNARGLASCPLRVHNS-GTSPKASASCAAVQKLLPRAPCRQVTSTTTTQQRQVAEVDDRGQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQFDHAYTLESREERMDVLTSALWRGVYMSDESIKEPHVRVLAEYVDAELADIYAVDASEFFAVCIEFAPPPTAELKAAXXXXXXXXXXXXXXXXGTVA-AAPGLEGGAADSTAAGRGGGIGEKVHHGDFGSGDGREGRWRACLAESGKVYYWHTVSREVTWDRPAGAEAYVPSVMPKADQTLTAAA 410
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1539.3117.1 vs. uniprot
Match: A0A484DVK9_BRELC (WW domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVK9_BRELC)

HSP 1 Score: 96.7 bits (239), Expect = 7.410e-19
Identity = 69/277 (24.91%), Postives = 120/277 (43.32%), Query Frame = 2 
Query:  419 IMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQYDHAYTLESREERMDVLTSALWRGVYMSDESIKEPHVRVLAEYVDAELADIYAVDVSEFFAVCIEFAPPPTSELKXXXXXXXXXXXXXXXXXXXXXXXAAPGLEGGAADLTAAGRGGGIGEKVRHGDFGSGDGKEGRWRACLAESGKVYYWHTVSREVTWDRPTG 1249
            ++G  +  +     S+ + Q+C+N+    ++Y    +   F  +   L  +VWL+ RRL  EGE+GK +QEL+FD LW ET  ++R + +SE+ + KYLA+ QQ  F   + YD     +  +E      +A+ + +  ++ +       ++AE++  EL ++  VD        I + P P +  K                                 D+   G+                  + G WR+ L   GK+Y+W+  +R   WDRPTG
Sbjct:    1 MLGFLNEDDRLFRHSSAVFQSCMNHTAQPDYYRALGLPQSFRAQQAILMAHVWLVHRRLALEGEKGKIMQELVFDRLWEETVVRIRYLNISELTVNKYLAQVQQICFNACIAYD-----KGLKEGPRYFQTAVAQHLLENESTEGLRIASIMAEHMKRELKNLEKVDAKYIMLGTIPWTPLPETHAKIRPTDVD--------------------------DVVLIGQ------------------RFGNWRSALDNRGKLYFWNITTRYSIWDRPTG 228
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1539.3117.1 vs. uniprot
Match: F0WM81_9STRA (Uncharacterized protein AlNc14C153G7585 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM81_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.720e-18
Identity = 74/282 (26.24%), Postives = 119/282 (42.20%), Query Frame = 2 
Query:  407 WPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQYDHAYTLESREERMDVLTSALWRGVYMSDESIK--EPHVRVLAEYVDAELADIYAVDVSEFFAVCIEFAPPP-TSELKXXXXXXXXXXXXXXXXXXXXXXXAAPGLEGGAADLTAAGRGGGIGEKVRHGDFGSGDGKEGRWRACLAESGKVYYWHTVSREVTWDRP 1243
            W + ++G  +  +     S ++LQ+C+N +   E Y   ++  +F  +   L  +VWL+ RRL +EG+ G+ +QEL+FD LW ET  ++R  +VSE+ + KYL + QQ  F   V YD     +  E       +A+   +   D+S    E HVR   EY+   +  +  +D        I +A  P  S+LK                                 D+   G+                  K G+WR  L   G++YYW++ SR   W  P
Sbjct:   49 WLFNLLGYNNQDDKMYRESTKVLQSCVNQSAVPELYQAIRLRPDFRGQQALLMVHVWLIHRRLAKEGDAGRVLQELVFDRLWEETVLRIRHQQVSELTVNKYLKQVQQVCFNACVAYD-----KGLERSKTDFNTAIRCHLLAQDDSHSPDEDHVRATYEYIQQNMQMLEKLDEKYLMKGVIPWAQAPKVSDLKQI-------------------------------DIVLIGQ------------------KFGKWRTALDIRGQMYYWNSESRLSAWKLP 276
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1539.3117.1 vs. uniprot
Match: A0A024GN83_9STRA (WW domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GN83_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.360e-12
Identity = 67/282 (23.76%), Postives = 117/282 (41.49%), Query Frame = 2 
Query:  407 WPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQYDHAYTLESREERMDVLTSALWRGVYMSDESIKEP---HVRVLAEYVDAELADIYAVDVSEFFAVCIEFAPPPTSELKXXXXXXXXXXXXXXXXXXXXXXXAAPGLEGGAADLTAAGRGGGIGEKVRHGDFGSGDGKEGRWRACLAESGKVYYWHTVSREVTWDRP 1243
            W + ++G  +  +     S ++LQ+C+N +     Y   ++  +F  +   L  +VWL+ RRL ++GE G+ +QE +FD LW ET  ++R  +VSE+ + KYL + QQ  F   + YD        E   D   +A+ R   ++++ +  P   +V++ + Y+   +  +  +D        I +   P                               G +    D+   G+                  K G WR  L   GK+YYWH+ SR   W+ P
Sbjct:   70 WLFNLLGYNNNDDKLYRESVKLLQSCVNQSAVPNLYHAIRLRPDFRGQQALLMAHVWLVHRRLGKQGEAGRVLQEGVFDRLWEETVSRIRHQKVSELTVNKYLKQVQQVCFNACIAYDTGL-----ERSKDDFNTAI-RCHLLAEDDLHVPDEQYVQMTSTYLWQNMKMLDKLDERYLMKGVIPWDHVPD----------------------------IAGFK--QLDVVLIGQ------------------KFGNWRTALDNCGKMYYWHSESRLSAWELP 297
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1539.3117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJV2_ECTSI1.070e-25995.39WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A484DVK9_BRELC7.410e-1924.91WW domain-containing protein n=1 Tax=Bremia lactuc... [more]
F0WM81_9STRA3.720e-1826.24Uncharacterized protein AlNc14C153G7585 n=1 Tax=Al... [more]
A0A024GN83_9STRA1.360e-1223.76WW domain-containing protein n=1 Tax=Albugo candid... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1539contigE-siliculosus-1a_F_contig1539:5056..10863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1239
Model size1963
Exons9
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CZHZ@1,2SAFG@2759
EggNOG free text desc.Ubiquinol-cytochrome C chaperone
KEGG koko:K17662
Seed eggNOG ortholog2880.D8LJV2
Seed ortholog evalue6.4e-208
Seed ortholog score729.9
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928046.3708272-UTR-E-siliculosus-1a_F_contig1539:5055..51281622928046.3708272-UTR-E-siliculosus-1a_F_contig1539:5055..5128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 5056..5128 +
1696318786.2925272-UTR-E-siliculosus-1a_F_contig1539:5055..51281696318786.2925272-UTR-E-siliculosus-1a_F_contig1539:5055..5128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 5056..5128 +
1622928046.5458353-UTR-E-siliculosus-1a_F_contig1539:10212..108631622928046.5458353-UTR-E-siliculosus-1a_F_contig1539:10212..10863Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 10213..10863 +
1696318786.3951774-UTR-E-siliculosus-1a_F_contig1539:10212..108631696318786.3951774-UTR-E-siliculosus-1a_F_contig1539:10212..10863Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1539 10213..10863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928046.3882217-CDS-E-siliculosus-1a_F_contig1539:5128..51331622928046.3882217-CDS-E-siliculosus-1a_F_contig1539:5128..5133Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 5129..5133 +
1696318786.3047626-CDS-E-siliculosus-1a_F_contig1539:5128..51331696318786.3047626-CDS-E-siliculosus-1a_F_contig1539:5128..5133Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 5129..5133 +
1622928046.4020834-CDS-E-siliculosus-1a_F_contig1539:5318..55871622928046.4020834-CDS-E-siliculosus-1a_F_contig1539:5318..5587Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 5319..5587 +
1696318786.3143575-CDS-E-siliculosus-1a_F_contig1539:5318..55871696318786.3143575-CDS-E-siliculosus-1a_F_contig1539:5318..5587Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 5319..5587 +
1622928046.421983-CDS-E-siliculosus-1a_F_contig1539:6287..64391622928046.421983-CDS-E-siliculosus-1a_F_contig1539:6287..6439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 6288..6439 +
1696318786.3237927-CDS-E-siliculosus-1a_F_contig1539:6287..64391696318786.3237927-CDS-E-siliculosus-1a_F_contig1539:6287..6439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 6288..6439 +
1622928046.4374-CDS-E-siliculosus-1a_F_contig1539:6967..70721622928046.4374-CDS-E-siliculosus-1a_F_contig1539:6967..7072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 6968..7072 +
1696318786.3331966-CDS-E-siliculosus-1a_F_contig1539:6967..70721696318786.3331966-CDS-E-siliculosus-1a_F_contig1539:6967..7072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 6968..7072 +
1622928046.4548821-CDS-E-siliculosus-1a_F_contig1539:7503..75841622928046.4548821-CDS-E-siliculosus-1a_F_contig1539:7503..7584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 7504..7584 +
1696318786.3430665-CDS-E-siliculosus-1a_F_contig1539:7503..75841696318786.3430665-CDS-E-siliculosus-1a_F_contig1539:7503..7584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 7504..7584 +
1622928046.473821-CDS-E-siliculosus-1a_F_contig1539:8143..82121622928046.473821-CDS-E-siliculosus-1a_F_contig1539:8143..8212Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 8144..8212 +
1696318786.358706-CDS-E-siliculosus-1a_F_contig1539:8143..82121696318786.358706-CDS-E-siliculosus-1a_F_contig1539:8143..8212Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 8144..8212 +
1622928046.4895115-CDS-E-siliculosus-1a_F_contig1539:8756..89241622928046.4895115-CDS-E-siliculosus-1a_F_contig1539:8756..8924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 8757..8924 +
1696318786.3703156-CDS-E-siliculosus-1a_F_contig1539:8756..89241696318786.3703156-CDS-E-siliculosus-1a_F_contig1539:8756..8924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 8757..8924 +
1622928046.5103233-CDS-E-siliculosus-1a_F_contig1539:9315..95881622928046.5103233-CDS-E-siliculosus-1a_F_contig1539:9315..9588Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 9316..9588 +
1696318786.378874-CDS-E-siliculosus-1a_F_contig1539:9315..95881696318786.378874-CDS-E-siliculosus-1a_F_contig1539:9315..9588Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 9316..9588 +
1622928046.5297015-CDS-E-siliculosus-1a_F_contig1539:10095..102121622928046.5297015-CDS-E-siliculosus-1a_F_contig1539:10095..10212Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 10096..10212 +
1696318786.3870053-CDS-E-siliculosus-1a_F_contig1539:10095..102121696318786.3870053-CDS-E-siliculosus-1a_F_contig1539:10095..10212Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1539 10096..10212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1539.3117.1prot_E-siliculosus-1a_F_contig1539.3117.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1539 5129..10212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1539.3117.1

>prot_E-siliculosus-1a_F_contig1539.3117.1 ID=prot_E-siliculosus-1a_F_contig1539.3117.1|Name=mRNA_E-siliculosus-1a_F_contig1539.3117.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=413bp
MQLRRNTVMAAVRLVQPLVKASNARGLASCPLRVHSSSGTSPKASASCAA
VQKLLPRAPCRQVTSTTTTQQRQVAEVDDRGQVSDERPAKDAVNSHELHE
KWGWKTSDPLYWPYKIMGVFSTKNTNALSSARMLQTCLNNAECTEWYSDG
KISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQM
RSIEVSEMMLKKYLAEAQQHTFITLVQYDHAYTLESREERMDVLTSALWR
GVYMSDESIKEPHVRVLAEYVDAELADIYAVDVSEFFAVCIEFAPPPTSE
LKAASKKAAKGGGGKRSSRKGTVAAAAPGLEGGAADLTAAGRGGGIGEKV
RHGDFGSGDGKEGRWRACLAESGKVYYWHTVSREVTWDRPTGAEAYVPSV
MPKTDQTLTAAA*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1539:5056..10863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1539.3117.1 ID=mRNA_E-siliculosus-1a_F_contig1539.3117.1|Name=mRNA_E-siliculosus-1a_F_contig1539.3117.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5808bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1539:5056..10863+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGCACACCCAGCGCCATTCGAACACAGCCGTAGCGCCACCAAGAGCGG
AGCTGGTGGAACCTGGGAAGACCATGCAGTGAGTATGTACGGAGGCAATT
GGGTGCTCTGAAGTAGTTCATTTGGTCAATAGCACGTTCTTTCTTTTGTC
TGCTGTCCGGGAACGGCGGTCCGTGTGTCAGTCAGCAGCAACCCTTTCTA
TCGGCTGATCGCTCATCTGTCGTCCCCTCTGCCCTGCCTGTTTGATTCAC
TCCATTCCACTAGGCTTCGAAGAAATACAGTCATGGCTGCCGTGCGACTT
GTCCAGCCGCTCGTCAAGGCGAGCAACGCCCGAGGATTAGCGAGCTGTCC
CCTGCGGGTGCACAGCAGCAGCGGAACATCTCCCAAAGCGTCGGCGTCTT
GTGCGGCCGTGCAGAAGTTATTGCCGAGGGCACCATGTAGACAGGTCACC
TCCACGACGACCACCCAACAGAGACAGGTTGCGGAGGTCGATGATCGTGG
GCAAGTCTCCGACGAACGGCCAGCGAAGGACGGTGAGACAAAATGTTGCC
GTGCCATCTTGTCGGTCACACGCAAGAAATCACCCACCCACCCTCTTTCC
AGTCAGGGGAGCCCCAGATCCCAGATGGGTGCAGCTCTCGCCCGGGATAA
ACAACAATTCTTGCTTTGATATCTATTCCCTGTGTACCAACAAACACCAA
CAGGTTGGAGTACTTGACGTAGGACTTGAGGCGCCACTCCAGGGCAATTC
GAGTGGTGCCGAATTGCCCTGCTGGGTGGACTAGACTTCCCGCACTGTAG
TTCGGTGTATGGACTGCTGTCTCATCCAGGACGCACGTTATATATTGCTG
TGGACGGCCCTCCCCTCATGATGTGCATCAATGCCGTGGCATCGTCGCAA
TTTTGACCAATGCCACTCGCAGACCAGAGTCATTTACTTGTGCTTTCCTT
CCAAAGTAGGTTGGGGAAGAGTTTGGCTCTGCCACGCGCGCATCACGTTC
TCGTACATTGTATTCTAGCCACATAGAGCAGTCCACTTGCCTCTGCCGAT
GCTCTCCCGTGCTTTCAGAGAGTCAACACAAAAAATCCCACGTGCCCTCA
CCGCTCGCGTCGCGGTGGTGGAACGTGTCTTCCACACGTCAATCCAACGA
CGTTTTCTCCCTCCCTCCTCTTTCGTTTTGACAACGTTCCTTTTGACGAC
AATGGTTCTTTTTCTCTTCACCGCGAGATCAGCGGTAAATAGTCACGAGC
TGCACGAGAAATGGGGCTGGAAGACCTCTGACCCTCTCTACTGGCCCTAC
AAGATCATGGGCGTCTTCTCGACCAAGAACACGAACGCCCTGTCCTCCGC
GCGGATGCTGCAGACCTGCCTCAACAACGCAGAGGTGTGTCGGAATCCGC
CACAGCGGTAGCAGGGTGTGACGCATGCCTGCGGGGTACACGCGCAGGAC
ACTCGCTGATCGCGGCGGCCAAGGCTTGCTACGAGAAGTGCGCTTAGGTA
TAGCTCCCAAGTTCTTGCCGTCGGTGTCATGACGTAAGATACCACACCCT
TCTGGACCGATATTCATAGGTAAGTTACTCCACGACGAAGAGGATGTACG
GATCGAACGATCTGTTGACGGAAAGCTCTCGATAAGACGGTTCCAACGCC
ACCATTTTCGGCACCGTCACCCTCTGTGCCATGGAGCACTCGAGCTTTGG
AAATCGATCCAGGGGGCGTGATACCTTGTGTCATCTATGGTATGCTTTTT
CCATGGGTTTCCACAAGTGCATGATGTCTGTTTCATGATGGTATTGGCAA
TGCTATAGGCCTAATGCCGCCAGACAACTTACCTTAAACACCGGTGCAGG
AATCAGCATGAATACAGGTATGCCCTACCCACTTGCTTGCCCCCCCCCCC
CCGGCCGAGCAGTGCACGGAGTGGTATTCGGATGGAAAGATCAGCAACGA
GTTCCTCCCGAAGCTTTTGTGGCTCAGCACCAACGTGTGGCTCATGTCCC
GCCGACTACTCCGAGAGGTGGGGGGAGAGACACAGATCGCGTGTGCGCGT
CGCACCGGCAGCGGTGCAGTTTTCCGTCGGAATTGCGCCGCATGCACATA
ACATGATAACCATCCCGTTTTAAGTTTCTCCTCACCTCGAAGCAGTTGAC
GCGACATAATTTTCTCGCAAAAAAAACGGCTTTTTCTGTAAGCGATAAAC
CAAAAACAAATCCTGTTGCTTTCGCCGCTGCAACTACGTTCGCGCTTTCA
AGTCATGGAACCTCTGCACCCACATGACCATTGCCTGGTGTCGTAAGCTG
GTCACCATCGTTGGAGCATGCAGGTGGTCTGGATAGTAACTGCAGCCCTG
ATTGTAACCGCGGACAGTTATCGGTGTGTCACAGGTGGTTGTTGCCCATC
GCTGCACTAAAACGTATCCACAATGTCGTGCTTTGTTTCGTCCGTAAGGG
GGAACGGGGGAAGAAGGTCCAGGAGCTGCTGTTCGACGAGCTGTGGCGCG
AGACAAAGCGGCAGATGCGCTCCATCGAGGTGGGAAGAAGGCCAACGACA
GCGGTACCCGTGTCTTGAGAGGGTGATGCGGTCTAGTGTACATGCTGCTG
TGGTTGTTAACGGTTTAGTGAAGCGTGTTACGCTTAGGTCTGTGCTAGCG
AATGACAACCCCTCCGTCGCAAACGCCATGGATGCGCTGGTGCATCGGAG
GCTCCACGGGATAACCGGGTCATTTCTGTCGTTCTTCTCACGACCAAGTA
TCGGGTGCTTCTTTCTTGCCTATGCTCGCGACTCATGGAGCACCGTGCCT
TTCCTTCATACCCAAGCATGGTGCTGTGTAAGTGTCGTTCCCTCGATTGA
GACCGAAGTCGCACAGAAAGGCATTCAATCCATGTGGGGTGCAGTGCGAG
GTGCAGGGGGTGAATCTGAATGTGCTTTTTCTGGCTGTTGTTTCGAACTC
CGAGTTGTGTGGCTGCGCCAGATTCTGGCTCAGCGGTGCACACAGTTTTT
TTTTTTCGAGCCAGCCCCGAACGACGGTGCTGGTCGCTAGGTAATCACAC
GTTTCCCCTTCTGAATCGACGCTGCGTGGTAACCGCAGGTATCCGAAATG
ATGCTCAAGAAGTATCTCGCTGAAGCTCAGCAGCACACGTTCATCACCCT
TGTGCAGGTATGTAACAGTCAGCGCGACACGCGTGCCCTTGCTGTTGATA
CTTTTAGCCGCTCGGGAACCACGGATGCCATCGCTGTGTGTACTGCTGTA
GCGCTTTTCTCCAAAAGTTACATTGGGGCGCTCTCGCCCTTGCTCTGCCG
GAACGCGGTGGTGCTTTTGAGATGGTGCCGATAATCGACCCAACGTTTTT
TCATGCCTTTGTAGGTGAGGCACACTACAGTTCATTTTTTTGCATGTGAC
CGTCTACGCGGTAGCTAGCAGCTCTGTCGACGGGTACGGTACGCCGTTGG
TGGTATGGTAACCCGGGTCTTCGGAAGGAGAACAAGCTCAGCGCTATTTT
GCCACCTTTTGTTGTTGTTGTTTTGTTGTTTGTCTCTCTCTCCTGCAAGA
TGCAGTTGATGAATCGCGAGGCAGCAGCGGCTCGTTGTCCTCGCACTACT
CCCACGATTCCCTTGAGCAGTTCTGAGCGTTCTCTCTCTCGCCGGCCACG
TGTCTTCTCTCTACCTGCCTCGTCGGCCTTGCGCTTACCCGGAACCTCCA
GTATGACCATGCTTACACCCTCGAGTCTCGGGAGGAGCGTATGGACGTCC
TCACTAGCGCCCTGTGGAGAGGTGTCTACATGAGCGACGAGAGTATCAAG
GAGCCGCATGTGCGGGTGCTGGCGGAGTACGTTGACGCGGAACTCGCCGA
CATTTACGCGGTAGATGTGGTGAGTTTTATCGCGCGAGGGCTCCTGCTGG
TCGGACCTCCGGTCTAAGCACATTCTTCGCCGCGTGTGTTTACGCTGCAG
TCTGGAAGCTGTCGGCGCTCTCTCGTCCAAGCGCGAGTGGTCTCCAATCG
CCGAGAATGGTACCGACATTGCATGCAGGATGGAAGGTTTGTGGATGCCA
AAAGCTCTTTTCCATCCCGTGCCGTCGCCGAAGGTTGGTCTAAGCAGACC
CGCCCAAAGCGATACAGCTGCCGTGCAAGGTCACATGCTTGACCACCACC
ATGTCCATGATCGCGCCCATCGCGATCGTACGGAAGATAACACCCCCCTT
GTCCGTTTGTTTTTCGTCACGTCCCGCTCGACCCCATCCTCCCGTGGACG
TTCCCCGCAGTCGGAGTTCTTCGCCGTGTGCATTGAGTTTGCCCCGCCCC
CTACGTCGGAGCTGAAGGCCGCCAGCAAGAAGGCGGCGAAAGGAGGCGGA
GGCAAGCGTTCGTCGAGAAAGGGCACGGTGGCGGCGGCAGCACCAGGCCT
AGAGGGGGGTGCCGCCGATTTGACGGCCGCGGGCAGGGGGGGGGGCATCG
GGGAGAAGGTCCGCCACGGAGACTTCGGCAGCGGAGACGGGAAGGAGGGA
AGATGGCGCGCTTGCCTGGCGGAGAGCGGAAAGGTGGGATTCGATTCCCG
TTGTTCCCTTCCTTTAGTCTCGCTCTCCGTGTTTCTGTGTGGGAGGCGTG
TTTTGAGGAGGGTACAGCAGTGGTCAAGGGAAGGCAGAGAAATCAAACGA
AGCTTGTTGAATTGATTTGGGCAACGCGCAGCTTTTCGTGTCTCTCTGTT
CGCCGATACGGTTGCAGTTGTGTGGTTTCGGAGAGGTCGGGCGACACATC
GCTCTTCTTGCGCTTTCACGGTAGCTGTGGAAAGTGACCGTGTGGGACAT
GAATTCGTGATACTGCGGTGTGTGTGAGCTAATGAAGCCCTTCAATCGCG
CTCGGTTTTGTGCCGCGCAATCGTCGCGCCTCTTGACCCAAATTGAATCC
TACGCCATGGTCTTGCGGTTCCCTTGTTTATCCGACGGCTTTTGTACAAT
GGGCTCACTGATCGACAAGGCGACCAAAGAGGCCTCGACCCGACGCTCGT
CGAAAACTGTCACACTCTCTGTCTTGTGATCGTCGGCCAGGTGTACTACT
GGCACACGGTTTCCAGGGAGGTGACGTGGGATAGACCAACGGGCGCCGAA
GCGTATGTTCCGAGCGTAATGCCCAAGACGGACCAGACACTCACGGCGGC
AGCGTGAGATGACTGCTGTGGCGATAGCGCGGCCTGCTCACTCTCGATGG
CTCCTGGTGCCTGGAGCAAAAGTACGTTAGCGCTGGGCCCATGGAATTTA
GTTCCTCCTTGTCCCAGCTCCATGCTTGTGGGCGCAGGCGCACGCAGATC
CAAGGATGACGCCTGTTTTTCGAGCCCCTCTGGGTTCGTCTGTGCGAGGC
TACTCTGTCTAGATGTGGTGTTCAGCTCCTGTTTTTGGTCTCGTGTGAAG
CGACTTCGATATCTGAAATGTTGATATTCGTATCACGTTCGTGTCGTTGG
TTGGTTGGAATAATATCGTGTTTTGGTCATTGGGGAGGCGGCGGGGGCAC
TCGGACGGTGCCCAAAATCAGGAAAGGCATGTACAAAACGAACCGATACG
GGAGGCGTCAACCAAACACGCACACCGAGTGGACTCACGTTTGTACAACG
TTTGCAGCGGAGAAGCCCTGGTCGAAGGTGGTGTGTTTTCTAGTACCCTC
GACTTCTTCACGTGTTTTGCCCACGCCAGTCCTCTCTCGAGATGACGGGA
AAGCCTCTGCTGTTTGCAACTTGTTCCTCGATCTTTTTGACCTCTCAACT
GAAACACCCAGGCCCATTAACGGTGGACGTGACTTCGGTTCAGAAGCTTT
GCGATCCT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1539:5056..10863+

>mRNA_E-siliculosus-1a_F_contig1539.3117.1 ID=mRNA_E-siliculosus-1a_F_contig1539.3117.1|Name=mRNA_E-siliculosus-1a_F_contig1539.3117.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2478bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1539:5056..10863+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAATGCAGCTTCGAAGAAATACAGTCATGGCTGCCGTGCGACTTGTC
CAGCCGCTCGTCAAGGCGAGCAACGCCCGAGGATTAGCGAGCTGTCCCCT
GCGGGTGCACAGCAGCAGCGGAACATCTCCCAAAGCGTCGGCGTCTTGTG
CGGCCGTGCAGAAGTTATTGCCGAGGGCACCATGTAGACAGGTCACCTCC
ACGACGACCACCCAACAGAGACAGGTTGCGGAGGTCGATGATCGTGGGCA
AGTCTCCGACGAACGGCCAGCGAAGGACGGCTTCGAAGAAATACAGTCAT
GGCTGCCGTGCGACTTGTCCAGCCGCTCGTCAAGGCGAGCAACGCCCGAG
GATTAGCGAGCTGTCCCCTGCGGGTGCACAGCAGCAGCGGAACATCTCCC
AAAGCGTCGGCGTCTTGTGCGGCCGTGCAGAAGTTATTGCCGAGGGCACC
ATGTAGACAGGTCACCTCCACGACGACCACCCAACAGAGACAGGTTGCGG
AGGTCGATGATCGTGGGCAAGTCTCCGACGAACGGCCAGCGAAGGACGCG
GTAAATAGTCACGAGCTGCACGAGAAATGGGGCTGGAAGACCTCTGACCC
TCTCTACTGGCCCTACAAGATCATGGGCGTCTTCTCGACCAAGAACACGA
ACGCCCTGTCCTCCGCGCGGATGCTGCAGACCTGCCTCAACAACGCAGAG
CGGTAAATAGTCACGAGCTGCACGAGAAATGGGGCTGGAAGACCTCTGAC
CCTCTCTACTGGCCCTACAAGATCATGGGCGTCTTCTCGACCAAGAACAC
GAACGCCCTGTCCTCCGCGCGGATGCTGCAGACCTGCCTCAACAACGCAG
AGTGCACGGAGTGGTATTCGGATGGAAAGATCAGCAACGAGTTCCTCCCG
AAGCTTTTGTGGCTCAGCACCAACGTGTGGCTCATGTCCCGCCGACTACT
CCGAGAGTGCACGGAGTGGTATTCGGATGGAAAGATCAGCAACGAGTTCC
TCCCGAAGCTTTTGTGGCTCAGCACCAACGTGTGGCTCATGTCCCGCCGA
CTACTCCGAGAGGGGGAACGGGGGAAGAAGGTCCAGGAGCTGCTGTTCGA
CGAGCTGTGGCGCGAGACAAAGCGGCAGATGCGCTCCATCGAGGGGGAAC
GGGGGAAGAAGGTCCAGGAGCTGCTGTTCGACGAGCTGTGGCGCGAGACA
AAGCGGCAGATGCGCTCCATCGAGGTATCCGAAATGATGCTCAAGAAGTA
TCTCGCTGAAGCTCAGCAGCACACGTTCATCACCCTTGTGCAGGTATCCG
AAATGATGCTCAAGAAGTATCTCGCTGAAGCTCAGCAGCACACGTTCATC
ACCCTTGTGCAGTATGACCATGCTTACACCCTCGAGTCTCGGGAGGAGCG
TATGGACGTCCTCACTAGCGCCCTGTGGAGAGGTGTCTACATGAGCGACG
AGAGTATCAAGGAGCCGCATGTGCGGGTGCTGGCGGAGTACGTTGACGCG
GAACTCGCCGACATTTACGCGGTAGATGTGTATGACCATGCTTACACCCT
CGAGTCTCGGGAGGAGCGTATGGACGTCCTCACTAGCGCCCTGTGGAGAG
GTGTCTACATGAGCGACGAGAGTATCAAGGAGCCGCATGTGCGGGTGCTG
GCGGAGTACGTTGACGCGGAACTCGCCGACATTTACGCGGTAGATGTGTC
GGAGTTCTTCGCCGTGTGCATTGAGTTTGCCCCGCCCCCTACGTCGGAGC
TGAAGGCCGCCAGCAAGAAGGCGGCGAAAGGAGGCGGAGGCAAGCGTTCG
TCGAGAAAGGGCACGGTGGCGGCGGCAGCACCAGGCCTAGAGGGGGGTGC
CGCCGATTTGACGGCCGCGGGCAGGGGGGGGGGCATCGGGGAGAAGGTCC
GCCACGGAGACTTCGGCAGCGGAGACGGGAAGGAGGGAAGATGGCGCGCT
TGCCTGGCGGAGAGCGGAAAGTCGGAGTTCTTCGCCGTGTGCATTGAGTT
TGCCCCGCCCCCTACGTCGGAGCTGAAGGCCGCCAGCAAGAAGGCGGCGA
AAGGAGGCGGAGGCAAGCGTTCGTCGAGAAAGGGCACGGTGGCGGCGGCA
GCACCAGGCCTAGAGGGGGGTGCCGCCGATTTGACGGCCGCGGGCAGGGG
GGGGGGCATCGGGGAGAAGGTCCGCCACGGAGACTTCGGCAGCGGAGACG
GGAAGGAGGGAAGATGGCGCGCTTGCCTGGCGGAGAGCGGAAAGGTGTAC
TACTGGCACACGGTTTCCAGGGAGGTGACGTGGGATAGACCAACGGGCGC
CGAAGCGTATGTTCCGAGCGTAATGCCCAAGACGGACCAGACACTCACGG
CGGCAGCGTGAGTGTACTACTGGCACACGGTTTCCAGGGAGGTGACGTGG
GATAGACCAACGGGCGCCGAAGCGTATGTTCCGAGCGTAATGCCCAAGAC
GGACCAGACACTCACGGCGGCAGCGTGA
back to top