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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3110.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI) HSP 1 Score: 210 bits (534), Expect = 2.890e-58 Identity = 149/155 (96.13%), Postives = 149/155 (96.13%), Query Frame = 1
Query: 1021 AKERQAAAAKDLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPVWGVVT 1485
AKERQAAAAKDLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMGG XXXXXXXXXXXXXXXXXXXXXXXX PVWGVVT
Sbjct: 355 AKERQAAAAKDLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMGGSGXXXXXXXXXXXXXXXXXXXXXXXX---XPVWGVVT 506
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3110.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE) HSP 1 Score: 206 bits (524), Expect = 3.140e-55 Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 1
Query: 1018 VAKERQAAAAKDLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMG 1371
VAKERQAAAAKDLERSEDMRRMLEAEVLGLRT+LNEPSTPSQAKYM+LSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMG
Sbjct: 586 VAKERQAAAAKDLERSEDMRRMLEAEVLGLRTKLNEPSTPSQAKYMNLSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLRAAGSFMG 703
BLAST of mRNA_E-siliculosus-1a_F_contig1538.3110.1 vs. uniprot
Match: A0A835YRL9_9STRA (Centrosomal protein of 162 kDa n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 9.680e-10 Identity = 53/135 (39.26%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 1021 AKERQAAAAKDLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKVEEMERRTARREAELQRVLSESRQQSKLELSRLRAIHAD-----------------------EMRAKDALVHGFRAELDGLLRAA 1356
A+E LERSE+ R LE EVL LR + P TPS A+ L++K+E+MERR A ++ ELQR L+E+R+ +KLE RL+A+H + E+R K+A + FR+EL+ +L AA
Sbjct: 1399 AREHVVTLTVQLERSEEARARLEGEVLELRRQCAMPQTPSAARMEALARKLEDMERRVAAQDEELQRALNEARRGAKLEAMRLQALHDEXXXXXXXXXXXXXXXXXXXXXXXELRDKEAQIDKFRSELEVVLAAA 1533
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1488 |
| Model size | 1488 |
| Exons | 4 |
| Ec32 ortholog | Ec-21_002780.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1538.3110.1 >prot_E-siliculosus-1a_F_contig1538.3110.1 ID=prot_E-siliculosus-1a_F_contig1538.3110.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=496bp
MRALKRGSPGTGAGGSRHRGRDGVSALGIAPAGGGGGGGGGGGGPDADGS
SNRGSRGIDGAGDEGEGGGGRVRREQQQQHQVSVAVGLAAMQQGREGENG
GGRGHQGERVDDDDADDSRPLTGRDDGGGGGGGGDDRRLDRGREAEAQEH
QQQQQQRRRRRQEEELERGQGVLRRQRDGNDAPRRSGDGREWSQQRQRRR
PQSESEDSSCRSGRGLLSSSTSSSVPGDALRAERARHERELERERAAAEA
RVGALKVRLMQTAQALGKAQAREQAEAWGRGKARAAAASGGGGGGGGGDG
SPSASGGGGGSSGGAGGGDGEDDVRLRKRRERVLELEAAVAKERQAAAAK
DLERSEDMRRMLEAEVLGLRTRLNEPSTPSQAKYMDLSKKVEEMERRTAR
REAELQRVLSESRQQSKLELSRLRAIHADEMRAKDALVHGFRAELDGLLR
AAGSFMGGGGSGGGEGSGAGGGGGGSEDNPPPPPPPPQPVWGVVT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1538:6625..10405- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1538.3110.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3110.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3781bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:6625..10405- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCGCGCTCAAGCGAGGCAGCCCCGGCACCGGCGCCGGCGGCAGCAG
GCATCGCGGTCGAGATGGCGTGTCTGCCCTGGGGATCGCTCCCGCCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGCCTGATGCGGACGGGAGC
AGCAATAGGGGGTCCCGTGGCATCGACGGCGCCGGCGATGAGGGGGAGGG
GGGAGGAGGTCGGGTCCGGCGAGAACAACAGCAGCAGCACCAGGTGTCGG
TGGCCGTCGGTTTAGCAGCGATGCAACAGGGAAGAGAAGGTGAGAACGGT
GGCGGCCGCGGTCATCAGGGAGAGAGGGTGGACGATGACGACGCCGACGA
CTCACGGCCGTTGACCGGGAGAGATGACGGCGGCGGCGGTGGCGGTGGCG
GTGATGACCGTCGGCTGGACCGCGGTAGAGAGGCAGAAGCCCAGGAACAT
CAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCAAGAGGAAGAGCTAGA
ACGAGGGCAGGGAGTTCTGCGGAGGCAGCGGGACGGCAATGATGCGCCGC
GGAGATCGGGAGACGGTCGGGAGTGGTCGCAGCAACGGCAACGGCGACGG
CCGCAGTCTGAATCCGAGGACAGCAGCTGCCGCAGCGGTAGGGGTCTGTT
GTCGTCGTCAACGTCGTCGTCGGTGCCGGGGGACGCGCTGAGGGCGGAGC
GCGCCCGGCACGAGAGAGAGCTGGAGAGGGAGAGAGCGGCGGCGGAAGCA
AGAGTAGGGGCGCTGAAAGTCCGGCTCATGCAAACAGCGCAGGTATTGAT
GAGTCGAAAGAAAGAAAGCGTCTGTGCTGTAAGGACTTTTTTTTCTTCTT
TTCTTACTGAGGCACGGGCGAAAACGTCTCTGTTCTCCGATGATTGATAA
GGGTCGGGGATAAGAACAGCAAGGAGGCATAGTGTTGCGTTGTCATTTTT
AGAAGATATGTATGCATACAAACAAAGCAGTCGATCTAGCACCATAGCTG
TCTCTGAAAGGACTGTGCCGCCTGCAGCAGCGGAGAGTGGGTGCTTGCTT
GCTTGCGCTCTCCGTGTGAACCGCCTTGGTTTGTTTTGTGGTTTCAGTTT
ATGCTGTGGTTGGGTGCGGTAGAGTATGATGGCACGGTTTAACCGCGGGG
GCGGTTGACCGCGCCGAGGTGTGACGTTGGTAGGAAAGAAAATGATTCAA
AGAACACCGCCACGGGCTACGTAACTACCGCTGATATCTCTTTCGGCACT
AAGGTTGGAGGCTATGTACCAATTTAACCTTTGGAACCCCCCCCCTCCGC
GTTCTCAGTGAACAGAGCGAAAACGTCTGTTGTCGTGGGGACGGTACCGT
AGGTGGAGAGAATTGGGGATGTTTCTTGTGAAAGGGAAGCCTGTCGCGCT
TGTCGTCTCCCTGCCGTCTCTCTTGTTAGGTCGTCTTCCCGCCGTCTTGC
TTGCCACATCGTCTCCGTGTCGTCCTGCTTGTTACGGTGTTTCGCTGTAC
GGTTTTGTTTTGCGATGAAACTATTTCACGCGTTCTTTTCGGCACGAGGG
GAAAAAAGGTCGGGACGGACCAAACGCGAAAGCTACCCGGTTTTTTGTTG
TTCCTCCTTGCTCCACCCAACGAATTTATCTCCCCCGTAGAGGCTGTGGG
GATAGGTTAGCAATGGGGTAAAAAAGCGTAAGTGGACGAAAAAACTCCTG
CAAGCCTTGCGGGTAGTGTACCGCAGGCAGCGGTGGTGGCAACGAACGCA
CGGAATCACACGCCCCCCTCCCCCCCCCGCCTTGCTTTGGCGGGAAACCA
AACCAAACCCACAGGCCCTCGGCAAGGCGCAGGCACGGGAGCAAGCCGAG
GCCTGGGGCAGGGGGAAGGCGCGCGCCGCTGCGGCAAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGTGATGGAAGTCCTTCCGCTAGTGGCGGAGGGGGAG
GTAGTAGTGGTGGGGCCGGCGGCGGGGACGGCGAAGACGACGTGAGGCTT
AGGAAGAGGAGGGAGCGGGTGCTGGAGCTGGAGGCCGCGGTGGCTAAGGA
GCGGCAGGCGGCGGCAGCGAAGGACCTGGAACGATCAGAGGTTGGATGGT
TCGTCGGTTGTTTCTTGGGATTGATCGCGGTCCGTCGGTTGCGGAGGGGG
CTACATGGGTTCGACGTGATCTGGGGTGAAGAGGAGGCTGTTTTTCTGAG
CACGTGGGACTACTTCGGTCTGTGGTAGCGAGAAGATGGCGGGGTTGGTG
TGAGCACGGTGTGGTAGAAGCCGAACCTCTTGGTGGTGGTAGTTGTGGTT
TTTGATATGGCGACGGTCTTGGCGAGAACAGGGATGCCTCGGTTGTGCTC
TTGTCTACACACACATTCCAAGGACCCAGGCTTATGGCGTGATGAAGCCA
ACTAATTCCCCCCTTTCTCTCCCTCGGAAACCATTTTTCTTTTTTTGTTG
TGCTGATTCGGACCGACCGCGGACGAGCAGGACATGCGGCGAATGTTGGA
AGCCGAGGTGCTCGGGCTGAGGACCAGGCTGAACGAGCCCTCCACGCCCT
CGCAGGCCAAGTACATGGACCTCTCCAAAAAGGTGTGGGCTTTGCGCGCG
AGGCACGGCTGCTACTACTGCTGTGCTGTGTGTGCTCTCCCACGCATTCG
TAGTTTGACACTTTTTGTTTTGTTTTTTGGTGTGGTGTGTCGTGGGCCGG
AATTTTCCCTCTCGATGCAGCTCGACCGCGGCCCTCGCGCCTGGACGAAC
CGCCGTATGTTGCTGGTCCGCGGTGATTGCGTGATTACTACAGTACACGC
ATCGGATAGACTCGACGTTCGTCTTGGCTCGCTCGGTCGATTTCTTCGCA
ACCAAGAGGGTGCTATCGAAAAACCGCCCGGCATCTAAAGGGGGCAGCTC
TCGACGAAGAAACCGTTTTCGACGTTCCCTATCGATTGTGAAGCAACGAA
TTGAGCCATGAAGCCTGCGCATTCGGTTGAGCCATCAAATCAAGTCTGCC
TGGGAGGGGGGGAGGGGTACAATCACCTCGCAGGATTGCGGTACGAGCTT
ACCGCCTTCTGACCCAAAGATGACACGCGTTAGGTACTGTACGGTATTTG
ATGCCGTCGATGGCGCGGCTTGAAACAAAGAACGCCTGGATGACTGTTGC
ACGACTGAAAACCGGCGACTAGGGCATGTAGGGCCAGGCCCTCAATAAAA
GGGGGGGGGGAGATGTAGATATAGGGTGGACATGCAAGATTTTCTGCGTA
AACACACCACACGATGGAGACGCAAACAGCGCGCTCGAAGATTGGTCGGG
TCCCTACCAGGAGAGAGAGGTGGCGGTGCCTCTATCTCGAAGCCAGGGAT
CTATGCGTTTGTCGATGATCCACCGACAAGGGCATGTGAACGATAACGAC
TCCGCTCACCCCCCTGCCCTGCCCCCCCAAAAAAAAAAAAAAATCGAACT
AATAAAACATCAGGTGGAAGAGATGGAGCGTCGCACGGCGCGGCGCGAGG
CCGAGCTGCAGCGGGTGCTCTCGGAGAGCCGGCAGCAGTCCAAGCTCGAG
CTCTCGCGGCTGCGGGCCATCCACGCCGACGAGATGCGAGCGAAGGACGC
CCTCGTGCACGGCTTCCGGGCGGAGCTCGACGGCTTGCTGAGGGCGGCGG
GGAGTTTCATGGGCGGCGGCGGCAGTGGCGGCGGCGAAGGTAGTGGGGCG
GGGGGGGGGGGGGGGGGGAGCGAGGATAACCCGCCGCCGCCGCCGCCGCC
GCCCCAGCCTGTTTGGGGGGTTGTTACTTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1538:6625..10405- >mRNA_E-siliculosus-1a_F_contig1538.3110.1 ID=mRNA_E-siliculosus-1a_F_contig1538.3110.1|Name=mRNA_E-siliculosus-1a_F_contig1538.3110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2976bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1538:6625..10405- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCGCGCTCAAGCGAGGCAGCCCCGGCACCGGCGCCGGCGGCAGCAG
GCATCGCGGTCGAGATGGCGTGTCTGCCCTGGGGATCGCTCCCGCCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGCCTGATGCGGACGGGAGC
AGCAATAGGGGGTCCCGTGGCATCGACGGCGCCGGCGATGAGGGGGAGGG
GGGAGGAGGTCGGGTCCGGCGAGAACAACAGCAGCAGCACCAGGTGTCGG
TGGCCGTCGGTTTAGCAGCGATGCAACAGGGAAGAGAAGGTGAGAACGGT
GGCGGCCGCGGTCATCAGGGAGAGAGGGTGGACGATGACGACGCCGACGA
CTCACGGCCGTTGACCGGGAGAGATGACGGCGGCGGCGGTGGCGGTGGCG
GTGATGACCGTCGGCTGGACCGCGGTAGAGAGGCAGAAGCCCAGGAACAT
CAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCAAGAGGAAGAGCTAGA
ACGAGGGCAGGGAGTTCTGCGGAGGCAGCGGGACGGCAATGATGCGCCGC
GGAGATCGGGAGACGGTCGGGAGTGGTCGCAGCAACGGCAACGGCGACGG
CCGCAGTCTGAATCCGAGGACAGCAGCTGCCGCAGCGGTAGGGGTCTGTT
GTCGTCGTCAACGTCGTCGTCGGTGCCGGGGGACGCGCTGAGGGCGGAGC
GCGCCCGGCACGAGAGAGAGCTGGAGAGGGAGAGAGCGGCGGCGGAAGCA
AGAGTAGGGGCGCTGAAAGTCCGGCTCATGCAAACAGCGCAGATGCGCGC
GCTCAAGCGAGGCAGCCCCGGCACCGGCGCCGGCGGCAGCAGGCATCGCG
GTCGAGATGGCGTGTCTGCCCTGGGGATCGCTCCCGCCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGTGGGCCTGATGCGGACGGGAGCAGCAATAG
GGGGTCCCGTGGCATCGACGGCGCCGGCGATGAGGGGGAGGGGGGAGGAG
GTCGGGTCCGGCGAGAACAACAGCAGCAGCACCAGGTGTCGGTGGCCGTC
GGTTTAGCAGCGATGCAACAGGGAAGAGAAGGTGAGAACGGTGGCGGCCG
CGGTCATCAGGGAGAGAGGGTGGACGATGACGACGCCGACGACTCACGGC
CGTTGACCGGGAGAGATGACGGCGGCGGCGGTGGCGGTGGCGGTGATGAC
CGTCGGCTGGACCGCGGTAGAGAGGCAGAAGCCCAGGAACATCAGCAGCA
GCAGCAGCAGCGGCGGCGGCGGCGGCAAGAGGAAGAGCTAGAACGAGGGC
AGGGAGTTCTGCGGAGGCAGCGGGACGGCAATGATGCGCCGCGGAGATCG
GGAGACGGTCGGGAGTGGTCGCAGCAACGGCAACGGCGACGGCCGCAGTC
TGAATCCGAGGACAGCAGCTGCCGCAGCGGTAGGGGTCTGTTGTCGTCGT
CAACGTCGTCGTCGGTGCCGGGGGACGCGCTGAGGGCGGAGCGCGCCCGG
CACGAGAGAGAGCTGGAGAGGGAGAGAGCGGCGGCGGAAGCAAGAGTAGG
GGCGCTGAAAGTCCGGCTCATGCAAACAGCGCAGGCCCTCGGCAAGGCGC
AGGCACGGGAGCAAGCCGAGGCCTGGGGCAGGGGGAAGGCGCGCGCCGCT
GCGGCAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGATGGAAGTCCTTC
CGCTAGTGGCGGAGGGGGAGGTAGTAGTGGTGGGGCCGGCGGCGGGGACG
GCGAAGACGACGTGAGGCTTAGGAAGAGGAGGGAGCGGGTGCTGGAGCTG
GAGGCCGCGGTGGCTAAGGAGCGGCAGGCGGCGGCAGCGAAGGACCTGGA
ACGATCAGAGGCCCTCGGCAAGGCGCAGGCACGGGAGCAAGCCGAGGCCT
GGGGCAGGGGGAAGGCGCGCGCCGCTGCGGCAAGCGGCGGCGGCGGCGGC
GGCGGCGGCGGTGATGGAAGTCCTTCCGCTAGTGGCGGAGGGGGAGGTAG
TAGTGGTGGGGCCGGCGGCGGGGACGGCGAAGACGACGTGAGGCTTAGGA
AGAGGAGGGAGCGGGTGCTGGAGCTGGAGGCCGCGGTGGCTAAGGAGCGG
CAGGCGGCGGCAGCGAAGGACCTGGAACGATCAGAGGACATGCGGCGAAT
GTTGGAAGCCGAGGTGCTCGGGCTGAGGACCAGGCTGAACGAGCCCTCCA
CGCCCTCGCAGGCCAAGTACATGGACCTCTCCAAAAAGGACATGCGGCGA
ATGTTGGAAGCCGAGGTGCTCGGGCTGAGGACCAGGCTGAACGAGCCCTC
CACGCCCTCGCAGGCCAAGTACATGGACCTCTCCAAAAAGGTGGAAGAGA
TGGAGCGTCGCACGGCGCGGCGCGAGGCCGAGCTGCAGCGGGTGCTCTCG
GAGAGCCGGCAGCAGTCCAAGCTCGAGCTCTCGCGGCTGCGGGCCATCCA
CGCCGACGAGATGCGAGCGAAGGACGCCCTCGTGCACGGCTTCCGGGCGG
AGCTCGACGGCTTGCTGAGGGCGGCGGGGAGTTTCATGGGCGGCGGCGGC
AGTGGCGGCGGCGAAGGTAGTGGGGCGGGGGGGGGGGGGGGGGGGAGCGA
GGATAACCCGCCGCCGCCGCCGCCGCCGCCCCAGCCTGTTTGGGGGGTTG
TTACTTGAGTGGAAGAGATGGAGCGTCGCACGGCGCGGCGCGAGGCCGAG
CTGCAGCGGGTGCTCTCGGAGAGCCGGCAGCAGTCCAAGCTCGAGCTCTC
GCGGCTGCGGGCCATCCACGCCGACGAGATGCGAGCGAAGGACGCCCTCG
TGCACGGCTTCCGGGCGGAGCTCGACGGCTTGCTGAGGGCGGCGGGGAGT
TTCATGGGCGGCGGCGGCAGTGGCGGCGGCGAAGGTAGTGGGGCGGGGGG
GGGGGGGGGGGGGAGCGAGGATAACCCGCCGCCGCCGCCGCCGCCGCCCC
AGCCTGTTTGGGGGGTTGTTACTTGA back to top
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