mRNA_E-siliculosus-1a_F_contig1536.3104.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1536.3104.1 vs. uniprot
Match: A0A7S3YP69_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YP69_9EUKA) HSP 1 Score: 74.3 bits (181), Expect = 1.950e-10 Identity = 64/238 (26.89%), Postives = 104/238 (43.70%), Query Frame = 1
Query: 364 MLLKGKIYGLPGSRGTRWSNFREWAKNQHPVLSMFFAHELHPFSRTERLSVMMCYLCWAFFITVIFEYGNKDKAAICNAGCNNTYSGRLSGEYYSQEICGPGSGSNEDTISAEEYDSNCDDVTPWWVLSFLIAAVTVPYSTILKFLATCACAQSLPNCLRSCFEWLGALILRLFGVLSVLW-LAMGITFSLELDGGIFIVTYIAGVIKSWFYW----PILAGAVFMYKYKKQRAAFQE 1062
ML YGLPG+ G S + E ++P++++ +H+LHPFSR ER+ V + YL +A F++V FEY +DT + V S +IAA+TVPY+ +++ +A +C P+ + C E G +L + S LW LA I E F++++I + +FY+ P+ V + +QR AF +
Sbjct: 1 MLAAQVAYGLPGTDGKFCSCYSEHVLQENPLIAITDSHDLHPFSRKERVMVFINYLAFALFLSVEFEY-------------------------------------RQDTF--------------FIVKSAIIAALTVPYNMLMRGIAEASCCIGCPSIFQKCCEETGRFVLWALVIQSALWTLAALIVLGEEDKENTFLISWI---LSQFFYYAFFDPLYRMVVVGLFFGRQRRAFDK 184
BLAST of mRNA_E-siliculosus-1a_F_contig1536.3104.1 vs. uniprot
Match: A0A7S3M2X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2X8_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.140e-8 Identity = 66/242 (27.27%), Postives = 99/242 (40.91%), Query Frame = 1
Query: 448 HPVLSMFFAHELHPFSRTERLSVMMCYL----CWAFFI-----TVIFEYGNK--------DKAAICNAGCNNTYSGRLSGEYYSQEICGPGS--------GSNEDTISAEEYDSNCDDVTPWWVLSFLIAAVTVPYSTILKFLATCACAQSLPNCLRSC--------FEWLGALILRLFGVLSVLWLAMGITFSL--ELDGGIFIVTYIAGVIK--SWFYWPILAGAVFMYKYKKQRAAFQE 1062
HP+LS+F H+LHPFS+ R V +C L C+AF + F+ D +A N G N+ S S +Y + G+ G D + Y+ C+ W +LS A TV Y ++L FLATC+C Q +C E LG L L F +L + + + + +V +A + WF W + F+YKY + R F +
Sbjct: 8 HPILSIFCTHKLHPFSKKHRFIVFLCSLSFAVCFAFILLDTPLVPTFQVCRSVCNCMLVTDDSAGVNVGANSFTSISGSSVHYGFGLSSNGTLIEETVCVGGVNDGRACSAYNDLCNSYESW-MLSAACGAGTVLYESVLHFLATCSCVQGRKRFQNNCCGSRVKKVIESLGGLTLSFFVLLGFAFTLFTLVYCYVNHFASELLLVLLLAELWSCVQWFIWAL---PWFLYKYPEDRRHFYD 245 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1536.3104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1536.3104.1 >prot_E-siliculosus-1a_F_contig1536.3104.1 ID=prot_E-siliculosus-1a_F_contig1536.3104.1|Name=mRNA_E-siliculosus-1a_F_contig1536.3104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=639bp MFGTSKISPALPPGSPLTIRSKDAANPGQRSAANGDVDVGDVVEAQRRHIback to top mRNA from alignment at E-siliculosus-1a_F_contig1536:18529..30148- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1536.3104.1 ID=mRNA_E-siliculosus-1a_F_contig1536.3104.1|Name=mRNA_E-siliculosus-1a_F_contig1536.3104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11620bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1536:18529..30148- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1536:18529..30148- >mRNA_E-siliculosus-1a_F_contig1536.3104.1 ID=mRNA_E-siliculosus-1a_F_contig1536.3104.1|Name=mRNA_E-siliculosus-1a_F_contig1536.3104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3834bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1536:18529..30148- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |