mRNA_E-siliculosus-1a_F_contig1536.3102.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1536.3102.1
Unique NamemRNA_E-siliculosus-1a_F_contig1536.3102.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1536.3102.1 vs. uniprot
Match: A0A6H5JIJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIJ6_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 9.900e-94
Identity = 178/198 (89.90%), Postives = 182/198 (91.92%), Query Frame = 1 
Query:   85 MEQQEMEGGLEVMEADLAETENSIYHLVRSNVELAQFLNEAPGDEDLEQAIEENKAVLVRRRHRVKTLRLAISDLKTQRPHMATAAAPSSSARIAVSASGPLDAQSMDRHNGTSSESTDRTVSPTEVSTGGGSGDVISTMTASMSLDAAPPIPPAGSSIMAGNSQASDKTPETGGSDQVSXXXXXXXXXGRDEGGVLL 678
            ME++EMEGGLEVMEADLAETENSIYHLVRSNVELAQFLNEAPGDEDLEQAIEENKAVLVRRRHRVKTLRLAISDLKTQRPHMATAAAPSSSARIA S SGP DAQSM RHNGT+SES D TVSPT VS+ GGSGDVISTMTASMSLDAAPPIPPAGSSI AGNSQASDKTPETGG     XXXXXXXX  RDEGGVLL
Sbjct:    1 MEKKEMEGGLEVMEADLAETENSIYHLVRSNVELAQFLNEAPGDEDLEQAIEENKAVLVRRRHRVKTLRLAISDLKTQRPHMATAAAPSSSARIAASTSGPRDAQSMGRHNGTTSESADHTVSPTVVSSAGGSGDVISTMTASMSLDAAPPIPPAGSSIAAGNSQASDKTPETGGXXXXXXXXXXXXXGDRDEGGVLL 198
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1536.3102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIJ6_9PHAE9.900e-9489.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1536contigE-siliculosus-1a_F_contig1536:670..5560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size600
Model size1658
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1536.3102.1prot_E-siliculosus-1a_F_contig1536.3102.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1536 751..4583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928044.0109737-UTR-E-siliculosus-1a_F_contig1536:669..7501622928044.0109737-UTR-E-siliculosus-1a_F_contig1536:669..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1536 670..750 +
1696318785.4514868-UTR-E-siliculosus-1a_F_contig1536:669..7501696318785.4514868-UTR-E-siliculosus-1a_F_contig1536:669..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1536 670..750 +
1622928044.0556982-UTR-E-siliculosus-1a_F_contig1536:4583..55601622928044.0556982-UTR-E-siliculosus-1a_F_contig1536:4583..5560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1536 4584..5560 +
1696318785.500367-UTR-E-siliculosus-1a_F_contig1536:4583..55601696318785.500367-UTR-E-siliculosus-1a_F_contig1536:4583..5560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1536 4584..5560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928044.0217466-CDS-E-siliculosus-1a_F_contig1536:750..8611622928044.0217466-CDS-E-siliculosus-1a_F_contig1536:750..861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1536 751..861 +
1696318785.4622202-CDS-E-siliculosus-1a_F_contig1536:750..8611696318785.4622202-CDS-E-siliculosus-1a_F_contig1536:750..861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1536 751..861 +
1622928044.0388188-CDS-E-siliculosus-1a_F_contig1536:4094..45831622928044.0388188-CDS-E-siliculosus-1a_F_contig1536:4094..4583Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1536 4095..4583 +
1696318785.4865475-CDS-E-siliculosus-1a_F_contig1536:4094..45831696318785.4865475-CDS-E-siliculosus-1a_F_contig1536:4094..4583Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1536 4095..4583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1536.3102.1

>prot_E-siliculosus-1a_F_contig1536.3102.1 ID=prot_E-siliculosus-1a_F_contig1536.3102.1|Name=mRNA_E-siliculosus-1a_F_contig1536.3102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=200bp
MMEQQEMEGGLEVMEADLAETENSIYHLVRSNVELAQFLNEAPGDEDLEQ
AIEENKAVLVRRRHRVKTLRLAISDLKTQRPHMATAAAPSSSARIAVSAS
GPLDAQSMDRHNGTSSESTDRTVSPTEVSTGGGSGDVISTMTASMSLDAA
PPIPPAGSSIMAGNSQASDKTPETGGSDQVSAAAAETGGGGRDEGGVLL*
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mRNA from alignment at E-siliculosus-1a_F_contig1536:670..5560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1536.3102.1 ID=mRNA_E-siliculosus-1a_F_contig1536.3102.1|Name=mRNA_E-siliculosus-1a_F_contig1536.3102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4891bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1536:670..5560+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTGGGTCTTCCTCGGGCGTGTTGCGTTGCGTTGGTTAATGCCGTTGGTG
GAGATCGCGTTGCAACAAACACACCACCGAGATGATGGAGCAGCAAGAGA
TGGAAGGGGGCTTGGAGGTGATGGAAGCTGACCTTGCTGAGACCGAGAAT
TCCATCTATCACCTCGTGCGCTCCAACGTTGAACTGGCCCAGGTACACTA
CATAACTGCTATACTACTGACAGCGGTTCTACATTGCTCGGTTGAACCTT
TGACTGGCAGGCATGTATCCCCGGCGACGGACTACGCCAACTATTGTTAG
AGCTATCGCTGGTACCAGCTGGTTCCACTAGCAGGGAGTATGCTAGTGGT
GTAGTCTACATGGAGTTCTTGTAGATATGCAGCTACAGGCAGGCACACCT
GATGAGGGAGCGAGGTTGTGTTGCGTATTCGTCACGGACTCGGTGTCCAC
CCCCCCAAATAAAACTGAAGCCTGTTCATGGACCTGTCACCATCGCAATG
ACCAGCTAAGCTTCCGTAGTACACTGCATATATACGTTCTCCCTTTTCTT
TCCTGGCGGTGCGGAACAAGCAATAGAGCAGGCGGTGTGAGACCTTTTTT
TCAAAACTACAGTAATAATAGTTTTTTGATGCAACAAGAGTGGCCCGAAT
AGGGGCGCTTTTTGTTTTGCAAAAAGCTGTTTAGAGGGATCGTGATGTAC
GTACGTATGTGCGAAAAAGACGGAAAAACAGTGGGTGAAGGGTGATGTTT
TCAGCCAAGGCTGTCCGACTGTCTGTCTGTCTGACCAGCCATAAATAAGC
CAGCAGACTCGAGCCCATTTCACCATCTAGGCACCAAATTGCAGTCTAAG
ACATGTTCACAACAGGTAATATTTTGCCCGAGCTGTCCCAACTCCTACCT
TTTCAATCCGTCGTCGGTACGTCGAGATAGCACAGCATCTGTGCAAAATA
TACATGCCGCATTCAGGCGTCCCCGCCAGACAGAGGAGGAGACTTGTTTG
GGACAAGACGTACGTAGTCTAGGCTAGATAGATAGATAGGTTCACGCAGA
CAGCATTAGAATCACCAGGAGCCAGACTGACATGGTCAAGGACCGGGGAG
GAGGGAGACACACACACACACCACAGCGAGAGTTTGGGCGAGAGCGAGGC
GGGAGCAGGGTGTGCCCGTACTGCTGTTCGCTATCGGCAGAGGAGCGAGG
AGAGATGCATACATACACGTTTGGTTGTTGTTGTTGTTGGTCTCTCGGTT
GTTTTGTTCCACGGCCAGTTGACACGCGAAGGACACCACGAGCCATAGAC
TATATGGAAAAAGGGGGAGGGAGACACACAACAACACATTGAGGGCGAGA
CGGCAGGAGGAGCGGGGTGTGGCCTATACGATAGTACTGCTACAGTTAAC
TACTATCAGCGGAGGAAGCGAGAGCAGAGATAGATGCGCATTTGGTTGGG
TCTCTCTCTCTCTCGGTCACCGCTTCTTGTTTTTTTCCAGCGAGAGGCGG
CACTTGGTGTTGCATATTTGAGCGTTGAGCTTTTTTGCACTATGCGCCTT
TCTTTGAGCAGAAAGAAAGGTCGCCACGCCCATCAACTTGGAGTGTGTCC
CATACTAGCGCCCTCGCCAGGTCACGGTACAATGCACTAAATAGCGCCCT
CGTCAGGTCACGGTAGTACTGTCCAGCACAACACCACATGTGCACAACAA
GTAAGTCTCTTACATATGCTTCTTCCTGCGGCCCGCATTTTGGATCTTTC
TATCTATGCATGTGTGGGCCGCGTTTCCGTGCGGGGTGTGCGGGCCGTAC
ATGATGAAATGACGACTCCGCGACTCAACACTGCGGCTGCCTGTTTGCTA
TGCTTAGCACGTGATGCATAGATAGCCTGCACACGCGAGACACGCCACAC
ACACGGAGCCAGACATAGACAAAGGGGGAGAGGGAGACACAGACCACAGC
GAGGCCGAGACGACGGAGAAGAAGCAGGGTGTGCCCTATGCTACTGCTGT
TAGCTATCGGCGGAGCGAGAGGAGAGATCAACATTTAGTTGGTTGTAGCA
GCAGCAGCAGCAGCAGCCTCTCTCTCTCTCTCTCTTTTTCATGACACCAA
CAACAACACGCTTGCTACGCACCAACATTGGTGGTGTCATGTAACTGCTG
TACGCCTTTCTACACTTTGGCCTAGTGTGCGACCAGCTTTCCGTGCCAGT
CTATTTACCCATCACACGCTTTTGAGCAGCACAGAGCTTTTTTTTTTTGA
GCTGCTAATGATGGAGAATACCACCCCCTCTCTCTAGCTGATGATGATGA
TACCACCCTGACTCTTGAAGTCACGGGTTCGAGTCCGTGTGTAGGTGTCC
TTTTTCCCAAGACATATTTGTTTTTTTGGTCATCTCATTATTTTTGATTG
ATTGGCGCACCCCACACCTCTAAATTCTGCTGCTACGCAGCAAACGAGCC
AATTATAGCAACGCACGAGCCTACAGCAGGTACGTTTTTCAACAAAAAAC
TATTCCACCTCCCGATCTTGTATTTTTAGGGGGGGCATATGCCGCACCGG
TCCTTGGTGTCAGGATTTCCAAGCACAAGCAGAAATCTCGCCAGAGTTAA
TCTTATTGTTGGCGTCCACATGGATATAAACATGTGTGGACGCGGATCAC
GGGTTTACGTCTACAGGTCGTTTCGTAGATGTGCACATGTACGCAACAAC
TACTTATACAACGGCTAACCTCCCTACATAGGGGCCCAACAAAAAATAAT
CAAAACTTTCGCGCGAAGCGCAAAAAAGACAGCCGTGTACGCAGGACTGC
TGCTGTTTAGCAACGCGGGGACGAGTGAAGGTGTTGTGTACGGTGTGGAT
GAAGCTCTCATGAATCAGCTGCTGCTGGTGCTGCTGGTGCTGCTGCCGCG
GTGTCGATGTGCACCACTTTCTTCCCTCGCTGACGCTCGCAGCAGCGGCA
ACGGGCTCTAAAAATCGTCCCCGTATGTGCGTGTGTACTTGGTCGCCTTG
GCCGGCAGCGTGTGTACATCTCCTTGTCTCTCTATTTTCGGGCTTGTCTG
TTGTGGATCAAAAGAAGATCGGCCTACAGACAGACCGGCCAAGATAGCCG
CAGATCGATTGACTTGTGTGCACTTGCTTCACTCGCTAATACGCTGCTAG
CAGCAGGCAAACCGGCTTCAAAAATCGCTCTCGATGCCTCGTATGATGTG
TTCCTTTGGACACCTTGCCTAAAGCAGTTTGTAAGTCTCATTGCCCCTGT
TTCAGGGATGCGTCTGTGTAGCAAGCTCAAAAGATCGGCCTGCAGATAGA
TGAAAGCAGAACAGACCATTGGGTGGAAGGTCCTTGCAAATCCCTATCCT
ATGCATACCCTTGTTCGCCGATGTGCAAATTTCCCCTCCCATCCATGACT
TGCCCCCCCCTCTTTTGGGCGACAGTTCTTGAACGAAGCGCCGGGAGACG
AAGACCTCGAGCAAGCCATCGAGGAGAACAAGGCAGTGCTGGTAAGAAGA
CGACATCGCGTGAAGACCCTCCGACTCGCCATCTCTGACTTGAAGACTCA
ACGCCCGCACATGGCCACAGCAGCGGCACCCTCCTCATCAGCACGGATCG
CTGTCAGTGCCTCCGGACCTCTGGATGCCCAATCGATGGATAGACACAAT
GGTACCTCTAGTGAAAGTACTGATCGTACGGTGAGCCCAACGGAAGTTAG
TACTGGAGGCGGGTCCGGTGACGTCATCAGCACCATGACCGCTTCAATGA
GTCTCGACGCAGCACCACCAATTCCTCCCGCCGGGAGCAGCATCATGGCG
GGCAATAGCCAGGCATCGGACAAGACCCCTGAAACTGGCGGTTCAGATCA
AGTTTCTGCGGCAGCTGCAGAGACAGGCGGCGGAGGTCGTGACGAAGGGG
GGGTGTTGCTTTGAGTCATCAGTCATCTGCACGGGCTAGCGTTGCTCCCT
GCTGTACTTCGAAGTACACGCCTTTGTCTTTTGGTGGTCGTATCGGACGT
GCCGCCGGTTGTAGCCAAGACCGGTGCGCACGACGTGCCTCGTTCCTCCT
TGTGAAAGGCATGCCTGGATAGTACGCATTGACTCTGTCTCTTTCGGAAA
ATAATTATTTAATAGTTGCTCGTTCTCGATGCTTCCAGAAGTCGACTTTC
AGCGTGGAAAGGTTTCCTGTTTGCTCTGAAACGGAGACCATACGGAAAAG
CGATGAACGAATAAACCAGGTTTGAGATGAGAGGCGTTTCTAGCCAACTT
GACAGTGCAGCCCTCGCCATTGTTTTCGTATTTTGTTGTTACACAAGCTG
AGCAAGACGTTGATATGCTTGTTGTTTCCGTTCGCAACAACTATAGACTG
AGACCAGGCACCGAGTGATCAGTACCGAAACGCATAGAACAACCGCTTGC
AAGATTTGGGACACTCAAGGCAAGAGTTTGAGGCATCGATCGTCTTGGTG
GGTTCGACGTGCCTCCTGGACAAAGCTACGGGGAGTGTATCTGCCGCAGC
TACGACTCTTTTGGTGTTTTCTCCTTCAGATGCGCAAGTCCAAGTTGCAG
CTGTTCCGGGATTGCGTGATAGAACACTTTTGGTTTGGTTTGGTCTGGGC
TTCTTGTAAATGACGAGGAAATCAGCATGGGGGCTCCGTTTGGTAGACAG
GACGCCGGCTTGGAGGATACGTGGGAAGTGTCGATGGACTACTAAGCGGT
GGCACATCGCCTTTTGTGGTGAAAGGTCGTGCGTTATCGTCGATGTCCAT
CTTAGAAACTGGGCGTTCTTAGACCATTTTCGTGCCGTAGCTTCTGCTGT
AGGGCTGTGCAACCGTCTGCTGCCCCGTATTGAAGCAAAGAACGTCAGCC
AAAAGTGAGGAATATTGATGATCCATAACCCAACGATTATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1536:670..5560+

>mRNA_E-siliculosus-1a_F_contig1536.3102.1 ID=mRNA_E-siliculosus-1a_F_contig1536.3102.1|Name=mRNA_E-siliculosus-1a_F_contig1536.3102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1536:670..5560+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGGAGCAGCAAGAGATGGAAGGGGGCTTGGAGGTGATGGAAGCTGA
CCTTGCTGAGACCGAGAATTCCATCTATCACCTCGTGCGCTCCAACGTTG
AACTGGCCCAGATGATGGAGCAGCAAGAGATGGAAGGGGGCTTGGAGGTG
ATGGAAGCTGACCTTGCTGAGACCGAGAATTCCATCTATCACCTCGTGCG
CTCCAACGTTGAACTGGCCCAGTTCTTGAACGAAGCGCCGGGAGACGAAG
ACCTCGAGCAAGCCATCGAGGAGAACAAGGCAGTGCTGGTAAGAAGACGA
CATCGCGTGAAGACCCTCCGACTCGCCATCTCTGACTTGAAGACTCAACG
CCCGCACATGGCCACAGCAGCGGCACCCTCCTCATCAGCACGGATCGCTG
TCAGTGCCTCCGGACCTCTGGATGCCCAATCGATGGATAGACACAATGGT
ACCTCTAGTGAAAGTACTGATCGTACGGTGAGCCCAACGGAAGTTAGTAC
TGGAGGCGGGTCCGGTGACGTCATCAGCACCATGACCGCTTCAATGAGTC
TCGACGCAGCACCACCAATTCCTCCCGCCGGGAGCAGCATCATGGCGGGC
AATAGCCAGGCATCGGACAAGACCCCTGAAACTGGCGGTTCAGATCAAGT
TTCTGCGGCAGCTGCAGAGACAGGCGGCGGAGGTCGTGACGAAGGGGGGG
TGTTGCTTTGATTCTTGAACGAAGCGCCGGGAGACGAAGACCTCGAGCAA
GCCATCGAGGAGAACAAGGCAGTGCTGGTAAGAAGACGACATCGCGTGAA
GACCCTCCGACTCGCCATCTCTGACTTGAAGACTCAACGCCCGCACATGG
CCACAGCAGCGGCACCCTCCTCATCAGCACGGATCGCTGTCAGTGCCTCC
GGACCTCTGGATGCCCAATCGATGGATAGACACAATGGTACCTCTAGTGA
AAGTACTGATCGTACGGTGAGCCCAACGGAAGTTAGTACTGGAGGCGGGT
CCGGTGACGTCATCAGCACCATGACCGCTTCAATGAGTCTCGACGCAGCA
CCACCAATTCCTCCCGCCGGGAGCAGCATCATGGCGGGCAATAGCCAGGC
ATCGGACAAGACCCCTGAAACTGGCGGTTCAGATCAAGTTTCTGCGGCAG
CTGCAGAGACAGGCGGCGGAGGTCGTGACGAAGGGGGGGTGTTGCTTTGA
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