mRNA_E-siliculosus-1a_F_contig1535.3099.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1535.3099.1
Unique NamemRNA_E-siliculosus-1a_F_contig1535.3099.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1535.3099.1 vs. uniprot
Match: D7FHY3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.310e-7
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 KAEFCSKHYRPGMVNVESKKCGHQGCKKHPSYGKGGNK 114
            KAEFCSKH +PGM+NV +K+CGH GC K PSYG  G K
Sbjct:   50 KAEFCSKHSKPGMINVVNKRCGHPGCMKQPSYGNHGMK 87
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BLAST of mRNA_E-siliculosus-1a_F_contig1535.3099.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.860e-7
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 KAEFCSKHYRPGMVNVESKKCGHQGCKKHPSYG 99
            KAEFCSKH +PGM+N+  K+CGH GC K PSYG
Sbjct:   45 KAEFCSKHSKPGMINLTKKRCGHPGCIKQPSYG 77
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BLAST of mRNA_E-siliculosus-1a_F_contig1535.3099.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.130e-7
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 KAEFCSKHYRPGMVNVESKKCGHQGCKKHPSYG 99
            KAEFCSKH +PGM NV  K+CGH GC K PSYG
Sbjct:   49 KAEFCSKHSKPGMTNVTKKRCGHAGCIKQPSYG 81
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BLAST of mRNA_E-siliculosus-1a_F_contig1535.3099.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.710e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    4 AEFCSKHYRPGMVNVESKKCGHQGCKKHPSYGKGGNK 114
            AEFCS+H +  MVNV SK+CGH GC K PSYG+ G+K
Sbjct:   22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1535.3099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHY3_ECTSI1.310e-768.42EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KY67_9PHAE6.860e-769.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY22_ECTSI7.130e-772.73EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K5N3_9PHAE8.710e-764.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1535contigE-siliculosus-1a_F_contig1535:15300..15809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size510
Model size510
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs29ZCP@1,2RXW0@2759
Seed eggNOG ortholog2880.D7FHY3
Seed ortholog evalue5.3e-07
Seed ortholog score61.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.6827123-CDS-E-siliculosus-1a_F_contig1535:15299..158091622928043.6827123-CDS-E-siliculosus-1a_F_contig1535:15299..15809Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1535 15300..15809 -
1696318785.3556545-CDS-E-siliculosus-1a_F_contig1535:15299..158091696318785.3556545-CDS-E-siliculosus-1a_F_contig1535:15299..15809Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1535 15300..15809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1535.3099.1prot_E-siliculosus-1a_F_contig1535.3099.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1535 15300..15809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1535.3099.1

>prot_E-siliculosus-1a_F_contig1535.3099.1 ID=prot_E-siliculosus-1a_F_contig1535.3099.1|Name=mRNA_E-siliculosus-1a_F_contig1535.3099.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=170bp
KAEFCSKHYRPGMVNVESKKCGHQGCKKHPSYGKGGNKKAEFCAQHSHKG
MVNIVTRRCGHPGCMKHPSYGAHLGKKAEFCAEHSQEGMVDVVKKRCGHA
GCTKRASYGMGDSKKPELCSQHAKQGMVDVVSKRCGHPGCRKHPSYAKAL
CKTAEVRAVHTQEGMVNVR*
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mRNA from alignment at E-siliculosus-1a_F_contig1535:15300..15809-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1535.3099.1 ID=mRNA_E-siliculosus-1a_F_contig1535.3099.1|Name=mRNA_E-siliculosus-1a_F_contig1535.3099.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1535:15300..15809- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGCGGAGTTCTGCTCAAAACACTACAGGCCGGGCATGGTTAACGTCGA
AAGCAAGAAGTGCGGCCATCAGGGGTGCAAGAAGCACCCGTCATATGGTA
AAGGCGGCAACAAGAAGGCGGAGTTCTGCGCTCAGCACAGCCACAAGGGT
ATGGTCAACATCGTCACCAGGAGGTGCGGCCATCCAGGGTGCATGAAGCA
TCCATCGTATGGTGCACACCTCGGCAAAAAGGCGGAGTTCTGCGCCGAGC
ACAGTCAGGAGGGTATGGTCGATGTCGTCAAAAAGAGGTGCGGGCATGCC
GGATGCACGAAACGAGCGTCATATGGTATGGGCGACAGCAAGAAGCCGGA
GTTATGTTCTCAGCACGCGAAACAGGGCATGGTTGATGTCGTCAGCAAGA
GATGCGGCCATCCAGGATGCAGGAAGCATCCGTCATATGCTAAAGCCCTT
TGCAAAACGGCGGAGGTCCGCGCTGTGCACACTCAGGAGGGTATGGTCAA
CGTCCGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1535:15300..15809-

>mRNA_E-siliculosus-1a_F_contig1535.3099.1 ID=mRNA_E-siliculosus-1a_F_contig1535.3099.1|Name=mRNA_E-siliculosus-1a_F_contig1535.3099.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1535:15300..15809- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGCGGAGTTCTGCTCAAAACACTACAGGCCGGGCATGGTTAACGTCGA
AAGCAAGAAGTGCGGCCATCAGGGGTGCAAGAAGCACCCGTCATATGGTA
AAGGCGGCAACAAGAAGGCGGAGTTCTGCGCTCAGCACAGCCACAAGGGT
ATGGTCAACATCGTCACCAGGAGGTGCGGCCATCCAGGGTGCATGAAGCA
TCCATCGTATGGTGCACACCTCGGCAAAAAGGCGGAGTTCTGCGCCGAGC
ACAGTCAGGAGGGTATGGTCGATGTCGTCAAAAAGAGGTGCGGGCATGCC
GGATGCACGAAACGAGCGTCATATGGTATGGGCGACAGCAAGAAGCCGGA
GTTATGTTCTCAGCACGCGAAACAGGGCATGGTTGATGTCGTCAGCAAGA
GATGCGGCCATCCAGGATGCAGGAAGCATCCGTCATATGCTAAAGCCCTT
TGCAAAACGGCGGAGGTCCGCGCTGTGCACACTCAGGAGGGTATGGTCAA
CGTCCGTTGAAAGGCGGAGTTCTGCTCAAAACACTACAGGCCGGGCATGG
TTAACGTCGAAAGCAAGAAGTGCGGCCATCAGGGGTGCAAGAAGCACCCG
TCATATGGTAAAGGCGGCAACAAGAAGGCGGAGTTCTGCGCTCAGCACAG
CCACAAGGGTATGGTCAACATCGTCACCAGGAGGTGCGGCCATCCAGGGT
GCATGAAGCATCCATCGTATGGTGCACACCTCGGCAAAAAGGCGGAGTTC
TGCGCCGAGCACAGTCAGGAGGGTATGGTCGATGTCGTCAAAAAGAGGTG
CGGGCATGCCGGATGCACGAAACGAGCGTCATATGGTATGGGCGACAGCA
AGAAGCCGGAGTTATGTTCTCAGCACGCGAAACAGGGCATGGTTGATGTC
GTCAGCAAGAGATGCGGCCATCCAGGATGCAGGAAGCATCCGTCATATGC
TAAAGCCCTTTGCAAAACGGCGGAGGTCCGCGCTGTGCACACTCAGGAGG
GTATGGTCAACGTCCGTTGA
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