mRNA_E-siliculosus-1a_F_contig1533.3090.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1533.3090.1
Unique NamemRNA_E-siliculosus-1a_F_contig1533.3090.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1533.3090.1 vs. uniprot
Match: D8LGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX5_ECTSI)

HSP 1 Score: 702 bits (1812), Expect = 2.410e-244
Identity = 540/621 (86.96%), Postives = 543/621 (87.44%), Query Frame = 1 
Query:  451 GGSVGVSRARRVRRRGFIGPTAVARGDTRPGGGSRSGTGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPDDFDYGXXXXXXXXXXXXXXXXXXXXXXFCWPEDEEEAATLLPQEGEDSISELDLKDGISLAAESSLFQQQXXXXXXXXXXXXXSRPDRTRMSGVGFRKSRAGGEERRADTASGPSLGGRTAAXXXXXXSPALESSTAGSAPLRLLTNPAEDEFTAPSAETPAARGELEVVAPDDGDEPRPGERWQHQRSVLGAVVSALAGALGLKLWEGLVRGDASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILALENQLAYLEEDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESETAMLEAVRAETTEALKQGSHATAAAAAAADEEVRQARAELEAAQALLEEALKEKAVAVQEKAAGDALLRTEQGKRAALEKEVERLKESTATLMQRLLDAVAKAERADEEESDAATAKAVAXXXXXXXXXXXAREEETARCREEFYSALAEEKEKLRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGRSMSDGITAGGTASERPTSGRXTGSGNSSGSSPPE 2313
            GGS+GVSRARRVRRRGFIGP AV RGDTRP GGSRSGTG V        XXXXXXXXXX                 FPDDFDYG  XXXXXXXXXXXXX       FCWPEDEE AA LLPQEGEDSISELDLKDGISLAAESS FQQQXXXXXXXXXXXXXSRPDRTR+SGVGFRKSRAGGEERRA TASGPSL      XXXXXX PALESS AGSAPLRLLTNPAEDEF  PSAETPAARGELE VAPDDGDEPRPGER QH RSVLGAVVSALAGALGLKLWEGL RGDASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILALENQLAYLEEDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESETAMLEAVRAETT+ALKQGSHATAAAAAAADEEVRQARAELEAAQALLEEALKEKAVAVQEKAAGDALLRTEQGKRAALEKEVERLKESTATL QRLLDAVAKAERADEEE DAATAKAVA  XXXXXXXX AREEETARCREEFYSALAEEKEKLRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGR MS GITAGG          X    N SGSSPPE
Sbjct:    2 GGSIGVSRARRVRRRGFIGPKAVERGDTRPSGGSRSGTGSVMAAKKIRGXXXXXXXXXXVRRWFGGRGSDDNRYDEFPDDFDYGSAXXXXXXXXXXXXXGDGSSALFCWPEDEEGAAALLPQEGEDSISELDLKDGISLAAESSPFQQQXXXXXXXXXXXXXSRPDRTRVSGVGFRKSRAGGEERRAATASGPSLXXXXXXXXXXXX-PALESSAAGSAPLRLLTNPAEDEFMPPSAETPAARGELEAVAPDDGDEPRPGERRQHHRSVLGAVVSALAGALGLKLWEGLARGDASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILALENQLAYLEEDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESETAMLEAVRAETTKALKQGSHATAAAAAAADEEVRQARAELEAAQALLEEALKEKAVAVQEKAAGDALLRTEQGKRAALEKEVERLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAERXXXXXXXXAAREEETARCREEFYSALAEEKEKLRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGRPMSGGITAGGXXXXXXXXXXXXXXXNGSGSSPPE 621
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1533.3090.1 vs. uniprot
Match: A0A6H5KQY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY4_9PHAE)

HSP 1 Score: 657 bits (1694), Expect = 2.040e-226
Identity = 506/633 (79.94%), Postives = 517/633 (81.67%), Query Frame = 1 
Query:  460 VGVSRARRVRRRGFIGPTAVARGDTRPGG------------GSRSGTGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--FPDDFDYGXXXXXXXXXXXXXXXXXXXXXXFCWPEDEEEAATLLPQEGEDSISELDLKDGISLAAESSLFQQQXXXXXXXXXXXXXSRPDRTRMSGVGFRKSRAGGEERRADTASGPSLGGRTAAXXXXXXSPALESSTAGSAPLRLLTNPAEDEFTAPSAETPAARGELEVVAPDDGDEPRPGERWQHQRSVLGAVVSALAGALGLKLWEGLVRGDASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILALENQLAYLEEDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESETAMLEAVRAETTEALKQGSHATAAAAAAADEEVRQARAELEAAQALLEEALKEKAVAVQEKAAGDALLRTEQGKRAALEKEVERLKESTATLMQRLLDAVAKAERADEEESDAATAKAVAXXXXXXXXXXXAREEETARCREEFYSALAEEKEKLRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGRSMSDGITAGGTASERPTSGRXTGSGNSSGSS-PPE 2313
            +GVSRARRVRR+GFIGPTA ARGDT P              GSRSGTG V        XXXXXXXXXXXXX                FPDDFDY   XXXXXXXXXXXXXXXXXX  FCWPEDE  AA LL QEGEDSISEL+LKDGISLAAESSLF QQ             S PDR R+SG GFRKSR G EERRA TASGPSLGGRTAA      S ALES     APL LLTNPAEDEFT PSAE  AARGELE+V PDDGDEPRPG RWQ QRSVLGAVVSAL GALGLKLWEGLVRG ASA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILALENQLAYLEEDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQES+TAMLE VRAET +ALKQGSHATAAAA AA+EEVRQ RAELEAAQALLEEALKEKAVAVQEKAAGDALLRTEQGKRAALEKEV RLKESTATL QRLLDAVAKAERADEEE DAATAKAVA        XXXAREEETARCREEFYSALAEEK+KLRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGR ++ GITAGGTASERPTSGR TGSGNS GSS PPE
Sbjct:    1 MGVSRARRVRRKGFIGPTAAARGDTCPXXXXXXXXXXXXXXGSRSGTGSVAAAKMIRGXXXXXXXXXXXXXRRWFGGRSSDDGRYDEFPDDFDYDSAXXXXXXXXXXXXXXXXXXALFCWPEDEXXAAALLAQEGEDSISELELKDGISLAAESSLFHQQQEQGTDGGSTSG-SLPDRRRVSGAGFRKSRVGEEERRAGTASGPSLGGRTAAAAAAA-SRALES-----APLPLLTNPAEDEFTPPSAEPSAARGELEIVPPDDGDEPRPGGRWQRQRSVLGAVVSALMGALGLKLWEGLVRGGASAEAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILALENQLAYLEEDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESKTAMLEVVRAETAKALKQGSHATAAAAEAANEEVRQVRAELEAAQALLEEALKEKAVAVQEKAAGDALLRTEQGKRAALEKEVVRLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAEREEIETAXXXAREEETARCREEFYSALAEEKKKLRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGRPVNGGITAGGTASERPTSGRTTGSGNSGGSSSPPE 626
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1533.3090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGX5_ECTSI2.410e-24486.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQY4_9PHAE2.040e-22679.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1533contigE-siliculosus-1a_F_contig1533:7878..13598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size2316
Model size2316
Exons7
Ec32 orthologEc-14_001550.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.5239859-CDS-E-siliculosus-1a_F_contig1533:7877..81051622928042.5239859-CDS-E-siliculosus-1a_F_contig1533:7877..8105Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 7878..8105 -
1696318784.8968377-CDS-E-siliculosus-1a_F_contig1533:7877..81051696318784.8968377-CDS-E-siliculosus-1a_F_contig1533:7877..8105Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 7878..8105 -
1622928042.541355-CDS-E-siliculosus-1a_F_contig1533:8916..91401622928042.541355-CDS-E-siliculosus-1a_F_contig1533:8916..9140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 8917..9140 -
1696318784.9079561-CDS-E-siliculosus-1a_F_contig1533:8916..91401696318784.9079561-CDS-E-siliculosus-1a_F_contig1533:8916..9140Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 8917..9140 -
1622928042.5638323-CDS-E-siliculosus-1a_F_contig1533:9600..97751622928042.5638323-CDS-E-siliculosus-1a_F_contig1533:9600..9775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 9601..9775 -
1696318784.91814-CDS-E-siliculosus-1a_F_contig1533:9600..97751696318784.91814-CDS-E-siliculosus-1a_F_contig1533:9600..9775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 9601..9775 -
1622928042.578018-CDS-E-siliculosus-1a_F_contig1533:10100..101781622928042.578018-CDS-E-siliculosus-1a_F_contig1533:10100..10178Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 10101..10178 -
1696318784.9270978-CDS-E-siliculosus-1a_F_contig1533:10100..101781696318784.9270978-CDS-E-siliculosus-1a_F_contig1533:10100..10178Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 10101..10178 -
1622928042.59084-CDS-E-siliculosus-1a_F_contig1533:10993..111131622928042.59084-CDS-E-siliculosus-1a_F_contig1533:10993..11113Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 10994..11113 -
1696318784.934964-CDS-E-siliculosus-1a_F_contig1533:10993..111131696318784.934964-CDS-E-siliculosus-1a_F_contig1533:10993..11113Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 10994..11113 -
1622928042.601701-CDS-E-siliculosus-1a_F_contig1533:11374..117771622928042.601701-CDS-E-siliculosus-1a_F_contig1533:11374..11777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 11375..11777 -
1696318784.9424167-CDS-E-siliculosus-1a_F_contig1533:11374..117771696318784.9424167-CDS-E-siliculosus-1a_F_contig1533:11374..11777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 11375..11777 -
1622928042.6198058-CDS-E-siliculosus-1a_F_contig1533:12510..135981622928042.6198058-CDS-E-siliculosus-1a_F_contig1533:12510..13598Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 12511..13598 -
1696318784.949656-CDS-E-siliculosus-1a_F_contig1533:12510..135981696318784.949656-CDS-E-siliculosus-1a_F_contig1533:12510..13598Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1533 12511..13598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1533.3090.1prot_E-siliculosus-1a_F_contig1533.3090.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1533 7878..13598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1533.3090.1

>prot_E-siliculosus-1a_F_contig1533.3090.1 ID=prot_E-siliculosus-1a_F_contig1533.3090.1|Name=mRNA_E-siliculosus-1a_F_contig1533.3090.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=772bp
LSCAHVTLLCCTDLSTTRARAAYPKVRRRGVTERQGTVAQSFTMHGHCGL
AIVTAATLVTTGTGIRTAAAAVAAAAGDGPVPPLRGGGPIQRPQASSRPS
PEPPTWSGTRAEGPSPDDSRDTKPPLRTPPEHPEATEVSWEPEGVRTSRT
GGSVGVSRARRVRRRGFIGPTAVARGDTRPGGGSRSGTGGVAAAKMIRGG
GGGGGGAGVRRWFGGRSSDNSRYYDEFPDDFDYGSAADDDADENSSSSAG
DGSSALFCWPEDEEEAATLLPQEGEDSISELDLKDGISLAAESSLFQQQQ
EQGTGSGSTSSSSRPDRTRMSGVGFRKSRAGGEERRADTASGPSLGGRTA
AAAAAAASPALESSTAGSAPLRLLTNPAEDEFTAPSAETPAARGELEVVA
PDDGDEPRPGERWQHQRSVLGAVVSALAGALGLKLWEGLVRGDASAAAAA
AAAAEVEGGVSRGGVEEEEEAAAAAAVMEEEAALQQEKILALENQLAYLE
EDRRRAALSAKEARSNRRKDDRQLKEYVHTLEVHLDQLSKEKQESETAML
EAVRAETTEALKQGSHATAAAAAAADEEVRQARAELEAAQALLEEALKEK
AVAVQEKAAGDALLRTEQGKRAALEKEVERLKESTATLMQRLLDAVAKAE
RADEEESDAATAKAVAEREEIEAAVAAAREEETARCREEFYSALAEEKEK
LRKQMEVRLATMRAGLKRRLQEARSERRGTTGSVSGRSMSDGITAGGTAS
ERPTSGRTTGSGNSSGSSPPE*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1533:7878..13598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1533.3090.1 ID=mRNA_E-siliculosus-1a_F_contig1533.3090.1|Name=mRNA_E-siliculosus-1a_F_contig1533.3090.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5721bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1533:7878..13598- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCTCATGTGCACATGTCACATTGCTCTGCTGCACCGACTTATCCACGAC
GAGAGCGAGAGCGGCATACCCAAAGGTGCGCCGACGAGGTGTGACGGAAA
GACAAGGAACGGTCGCTCAGAGCTTTACCATGCACGGGCATTGCGGGCTC
GCCATCGTTACGGCAGCAACGCTGGTGACCACGGGGACGGGTATCCGTAC
CGCAGCTGCTGCTGTTGCTGCTGCTGCTGGAGATGGTCCAGTGCCTCCGC
TGCGTGGTGGTGGCCCTATCCAAAGACCCCAGGCGTCTTCACGGCCATCG
CCGGAACCACCAACGTGGTCGGGCACGAGGGCAGAAGGCCCTTCTCCCGA
CGACAGCCGAGACACCAAGCCGCCATTACGAACGCCACCCGAACACCCGG
AAGCAACAGAAGTCTCGTGGGAGCCAGAGGGCGTTAGAACCAGCAGGACA
GGAGGCAGCGTAGGCGTCAGCAGAGCCAGGAGGGTGCGAAGAAGGGGCTT
CATCGGACCGACAGCGGTAGCGCGAGGTGATACTCGCCCCGGCGGCGGCT
CCAGGAGCGGCACTGGCGGCGTGGCGGCAGCGAAGATGATCAGAGGAGGA
GGAGGAGGAGGAGGAGGAGCTGGGGTAAGACGGTGGTTCGGGGGGCGCAG
CAGCGACAACAGCCGGTATTATGACGAGTTCCCCGACGACTTCGACTACG
GCTCGGCAGCCGACGATGATGCGGACGAGAACAGCAGCAGCAGCGCGGGG
GACGGCAGCAGCGCCTTGTTCTGTTGGCCTGAGGACGAGGAAGAAGCCGC
AACGCTTCTGCCGCAGGAAGGGGAGGACTCGATATCGGAGCTGGATTTGA
AAGACGGTATCTCGTTGGCAGCGGAGAGTTCGCTCTTCCAACAGCAGCAG
GAGCAAGGAACCGGCAGCGGCAGCACTAGCAGCAGTAGCAGACCGGATCG
AACGCGCATGTCGGGGGTTGGGTTCCGAAAGAGCCGGGCGGGGGGAGAGG
AGAGGCGTGCTGATACAGCGTCGGGGCCGTCTCTAGGGGGTAGGACTGCT
GCTGCTGCTGCTGCTGCTGCTTCACCAGCGCTGGAGAGGTGAGCGTGCAT
GCATGGATGCGTACAGGCATGCGCTCAACGCCAAGAGGGACCCCTCCTGG
TGTCTCTGCATGCCGCTTTCGCTGAAAATGGTGCTTTGGAGCTTGGAAGC
TTTTGTGTTGTGGCGCGCGCATGCGGGGAGGGGCTTACGTGGGGTTGTTC
CTTAGCAACGCTGTTCCCGTGGACTCCTGGGGGCCGATAGCCGTTTTGTT
CCGCCGGACACCGCTGCTGTTTAGGAACGTCTGTCATGTAGGGACGCGCG
GTCGATGGACATAAGTTGCCCTCGTTTTCGAGTCGAAGTCAATCCACGAC
ACCATGTCCATATCTTGAGCGTTACTTTTCTCTCATGTCGCGCCAATCAT
TAGCGCTCCGCTGATCGTGGAATCATTACCCGAGTCGCACTCTGTTAGCC
TGTGACAACGGGAATCGACCGCGTCGAGTGTTGGACTAGCACGGACAGAT
AGGTACTGTAGATCGGAACGGTTCTTAATGTGAAGACAACAACCGCAACC
ACTCCGTGACGAGTGTACTCTTCTTTAGCTCTCACGCAGTACACGGACAA
TTCGATTTTTTGGAGACCTACAACGCCGTTACTATCACGCCAAATGTAGG
CATCACCCACGCGTCTTGAGTGAACGCAACCTCCTGCCTACCGTACCTCA
AACACATCCCCCCTTATCCCTCTCCCTCCCCCCGCAAAACTTTTTGCGTT
GTTCCCTTCCACTCTCTACAGCAGTACCGCCGGCAGCGCTCCGCTCCGGT
TATTGACAAACCCCGCCGAAGACGAATTCACGGCTCCCTCTGCGGAAACC
CCCGCCGCGAGAGGCGAGCTAGAGGTCGTGGCCCCCGATGACGGAGATGA
GCCCCGTCCAGGCGAGCGTTGGCAGCACCAGCGCTCCGTGCTTGGTGCTG
TAGTCAGCGCGTTGGCGGGTGCCCTGGGATTGAAGCTTTGGGAAGGGTTG
GTGCGAGGCGACGCTAGCGCGGCGGCGGCGGCGGCGGCCGCCGCCGAGGT
TGAAGGAGGGGTGAGCAGGGGCGGGGTAGAGGAGGAGGAGGAGGCGGCGG
CGGCGGCGGCGGTGATGGAGGAAGAAGCTGCGTTGCAGCAGGAGAAGATC
CTGGCGCTAGAGAACCAGTTGGCGGTGAGGGAGAGGCAAGGGGTGGTGGT
GGTGGTTATTTTGTTACTATTGTTCGTAAGTGTTGGGTTGGCGGGGGAAT
CTCTTGTGGAATATTTTGGCCTCGGGACGTACGCGCGAACACCGACAAGG
CTATGGTGAGAAGGGGTGCAGTGTGTGGCTGCGACTGCTGCCTGCGCGCG
TTCTCCGTGTGCGTTAGTTTCTCGCTCACGGAGGGCTGCGGGTTTTGCTA
AGTTGGTGTGATGCATGCGTGCCCTCTCGCCGCAGTACCTGGAAGAAGAC
CGGCGGAGAGCGGCGTTGTCGGCGAAGGAGGCGAGGTCGAACAGGCGGAA
GGACGATCGACAACTCAAGGAGTACGTCCATACGCTAGAGGTTCACCTCG
ATCAGGTACAGCAGTATACCCTCATTGTGGAATCGTGGGTGTTGGTATGC
TCGATGCCAGTGGCAAGTGGCAGTACTGCTGTCTCGTGATGGTCAGGACA
CAAGCACCTGCGGATTCTTACAGTACGTATGGCCGGCATTGAGTACACCA
GCACGCTTCTTGAGCAGGCTGGCCCCTGTATGATGAATGCATGCACCCCC
TTGACTGCTACTGTATACATGCGATCGATCGCTCGCACCCCCAACATAGA
CCAATTTCGAAGCACGATTGCTCCACAACCAAGGGGTACGAGAGCTGGCT
TATTCGTGCAAAGAACGGCTGTAGACGGGGTCTTTCAGCACAGTCCCATC
CGGCATTGGCACCCCGTGGGTGGGGAGCAATCAAGCTGTTAATTTCATTC
TAGAAGGTTTGTCGTCACTCCCACTCTTACGGTAGGCTAGAATGCGACGA
CGTGCTGTACAGGTCGCAAAGTCGCCGTGGATCGTATTATGTAAGGCAAA
TATTTTTTTATGCTGGCTGCGTGTTTGGTCATGAATTGATACAAGAAAGA
ACAAGGTAGAAACAACACCAGCAGCAGCTCCACCACCAACAACTGGAGGT
GACGGCACGTGCTCACCCCATGCTTCGGCCACAACAGCAACAACAACAAC
AACATCATCACCACATACAACACAAGCAGCGACAACTAGGGATGACCACG
TGGTCTTGCCTCACGACACCGTCTCCTCTCCTCCCCCCTGCTCCTCGGCC
TTGCCCTCCTCCTCCCCCTCCTTCTCGTCACACTCTGGATGGGCTGCTTT
TCGTTTCACGAAAACTGCAGCTTTCCAAGGAGAAGCAGGAGTCCGAGACG
GCGATGCTAGAGGCCGTCAGGGCCGAAACTACGGAGGCTTTGAAGCAGGT
GAGGTTTCGTCGTTGTCGCTGTAGACAACTCTTGATTTTCGTAACGCATA
GCTTTGGAGAGATTGGAGAGAATTTTCCGTCATATTCTACAGTACACGGG
GTCTTCTTTGTTGCTCAGCGTGACGTGGTTTGTAGCTAGCAGAATGTGTG
CTGTTGACGTCTAGTAGAGAGTGGTCGGCGGTGGGGTGTTGGCGTGTATC
TCTTAGGGGGGAGGAGGTTTCGCAACGACGGCCATAACCCCTCACCCGCG
CCCAACGAACTCGCTCGCTTGCCGATGCACGACGACCAACCACCCGTGAC
TCCCTACCGACCGATCATCGCAGGGGAGCCACGCCACGGCGGCTGCGGCG
GCGGCAGCGGATGAGGAGGTGCGGCAGGCGAGGGCGGAGCTCGAGGCTGC
GCAGGCGTTGCTAGAAGAGGCCCTGAAGGAGAAGGCGGTGGCGGTACAGG
AGAAGGCCGCCGGCGACGCCCTCTTGAGGACCGAGCAGGGGAAAAGAGGT
GGGTACAGTAGGGTCCCTGGTCAGTGGTTGTCGGATGCACGCACACCTTG
GTCGTATTTTTAGGTGTACGCGTGTCAAGGGAATGGAGAATAAATAAAGG
TGGCAATAGCCGTATCAAACCTCTTTGCGTACGAACAGACATACAGCGTT
TGCGGGAGAAAACTTTCACAACACAAAGCGGCGAAAGAGGGAGGGGATGA
GACGCGGAAAGAAATTACCTGTAGGTCAAGTATTGTAGTTGTTTAATGAG
TACGAATATTTTCTAGCTTGCGATGGCAGCCAGTGGGAAATTTTTTCCAA
TGTTAAAAGGGTTCTTAAGAAGCTCTACTTCCTGCTTCCGGCGAATGCAA
GCGAATCTAGTGTAACCGTTTCCACAAACAAAATCGACGCCAGCTTGACG
CAACAAAACTAACGACGCGCTTGTTCGTCCAATCGCCCCCCATGACCCAA
ACTTCCAGCCGCGTTGGAGAAGGAGGTAGAGAGGCTGAAGGAATCTACGG
CCACGCTCATGCAGCGTCTGCTGGACGCGGTGGCTAAGGCCGAGCGTGCG
GACGAGGAGGAGAGCGACGCGGCCACGGCGAAGGCTGTGGCGGAGCGGGA
GGAGATCGAGGCGGCGGTGGCGGCGGCGAGAGAGGAGGAGACGGCGCGGT
GTCGAGAAGAGTTCTATTCTGCTCTCGCGGAGGTGGGCGGTGTTGCTACT
ACTTGTACTACCTTAAGACCAACAATGTAGCGGGAGATATAGGTATGTCT
GTGGTTATTTTGATTGGTGTCGGCCCGATACTTAACCAGCCGACCAGAGG
CGAAAGTATGTTAGTCTGAGTAGCACAAAGAGCGAGTACGGACAAGCCTT
TGGTATGGGAAAGAAGTATTGACAAGAGACATTTTTCACTCCCGATGTAT
CGCGTACTACTCTGCTCCATGTTTGCCCCGCACGGAGTGTGCGTATGTCT
TTTACTGGCGTGATCGACGGCTTGCACGGCCGTGCGTTGTTGGTGTATTT
CCCCCCTTCTCTGCATGGGCTGCTCCTTGGTCGTGTACTGTAGATGCTGC
AGAAGGCACGCCTTGCGGCCTGTCTATATGTTCCCATTTGAATCTATGTC
TTTGTCGTTGCGAGGGTTTTTTGAGTGGTTATGGTGGTGAGGAGGAGGAG
GAGGAGCAGAAAATGCGAGTTGTTTTCGTGAGCCAACCTAGACATGTGGT
TGCCACCAAAGGTGGTGTAAGATGGAGATATCTCGATCGAGTCTCTCAGT
GGTGAGTGAGGCCAATCAATCGCAGGCACCATACGTATGTCTCTCCAGGG
CGCGGTGGGACCCCCCCTTCCCCCCTATCCCCCCATGCCCCCTTCCGCCA
TTTTGATGAAAAAGCATGGCTTGCGCGAAAACGCCTTCGCGGTCTTGTAC
CTTATTCTGTTGGTGTTGTTGGTGTTGTTGGTGTTGCAAAACCAGTACAC
AAAACTTCGCTCGCCCGCCCCAAATCCGATCTTCCTCTCTCAGGAAAAGG
AGAAGCTCCGCAAGCAGATGGAGGTTCGCCTTGCCACCATGCGAGCGGGG
CTGAAGCGTCGCCTTCAGGAGGCGCGGTCAGAGCGCCGCGGGACCACTGG
TTCCGTTTCGGGAAGGTCAATGAGCGACGGAATCACCGCTGGTGGCACCG
CATCGGAACGACCAACAAGCGGCCGCACCACCGGCAGTGGCAACAGCAGC
GGCAGCAGCCCGCCGGAATAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1533:7878..13598-

>mRNA_E-siliculosus-1a_F_contig1533.3090.1 ID=mRNA_E-siliculosus-1a_F_contig1533.3090.1|Name=mRNA_E-siliculosus-1a_F_contig1533.3090.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1533:7878..13598- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCTCATGTGCACATGTCACATTGCTCTGCTGCACCGACTTATCCACGAC
GAGAGCGAGAGCGGCATACCCAAAGGTGCGCCGACGAGGTGTGACGGAAA
GACAAGGAACGGTCGCTCAGAGCTTTACCATGCACGGGCATTGCGGGCTC
GCCATCGTTACGGCAGCAACGCTGGTGACCACGGGGACGGGTATCCGTAC
CGCAGCTGCTGCTGTTGCTGCTGCTGCTGGAGATGGTCCAGTGCCTCCGC
TGCGTGGTGGTGGCCCTATCCAAAGACCCCAGGCGTCTTCACGGCCATCG
CCGGAACCACCAACGTGGTCGGGCACGAGGGCAGAAGGCCCTTCTCCCGA
CGACAGCCGAGACACCAAGCCGCCATTACGAACGCCACCCGAACACCCGG
AAGCAACAGAAGTCTCGTGGGAGCCAGAGGGCGTTAGAACCAGCAGGACA
GGAGGCAGCGTAGGCGTCAGCAGAGCCAGGAGGGTGCGAAGAAGGGGCTT
CATCGGACCGACAGCGGTAGCGCGAGGTGATACTCGCCCCGGCGGCGGCT
CCAGGAGCGGCACTGGCGGCGTGGCGGCAGCGAAGATGATCAGAGGAGGA
GGAGGAGGAGGAGGAGGAGCTGGGGTAAGACGGTGGTTCGGGGGGCGCAG
CAGCGACAACAGCCGGTATTATGACGAGTTCCCCGACGACTTCGACTACG
GCTCGGCAGCCGACGATGATGCGGACGAGAACAGCAGCAGCAGCGCGGGG
GACGGCAGCAGCGCCTTGTTCTGTTGGCCTGAGGACGAGGAAGAAGCCGC
AACGCTTCTGCCGCAGGAAGGGGAGGACTCGATATCGGAGCTGGATTTGA
AAGACGGTATCTCGTTGGCAGCGGAGAGTTCGCTCTTCCAACAGCAGCAG
GAGCAAGGAACCGGCAGCGGCAGCACTAGCAGCAGTAGCAGACCGGATCG
AACGCGCATGTCGGGGGTTGGGTTCCGAAAGAGCCGGGCGGGGGGAGAGG
AGAGGCGTGCTGATACAGCGTCGGGGCCGTCTCTAGGGGGTAGGACTGCT
GCTGCTGCTGCTGCTGCTGCTTCACCAGCGCTGGAGAGCTCTCATGTGCA
CATGTCACATTGCTCTGCTGCACCGACTTATCCACGACGAGAGCGAGAGC
GGCATACCCAAAGGTGCGCCGACGAGGTGTGACGGAAAGACAAGGAACGG
TCGCTCAGAGCTTTACCATGCACGGGCATTGCGGGCTCGCCATCGTTACG
GCAGCAACGCTGGTGACCACGGGGACGGGTATCCGTACCGCAGCTGCTGC
TGTTGCTGCTGCTGCTGGAGATGGTCCAGTGCCTCCGCTGCGTGGTGGTG
GCCCTATCCAAAGACCCCAGGCGTCTTCACGGCCATCGCCGGAACCACCA
ACGTGGTCGGGCACGAGGGCAGAAGGCCCTTCTCCCGACGACAGCCGAGA
CACCAAGCCGCCATTACGAACGCCACCCGAACACCCGGAAGCAACAGAAG
TCTCGTGGGAGCCAGAGGGCGTTAGAACCAGCAGGACAGGAGGCAGCGTA
GGCGTCAGCAGAGCCAGGAGGGTGCGAAGAAGGGGCTTCATCGGACCGAC
AGCGGTAGCGCGAGGTGATACTCGCCCCGGCGGCGGCTCCAGGAGCGGCA
CTGGCGGCGTGGCGGCAGCGAAGATGATCAGAGGAGGAGGAGGAGGAGGA
GGAGGAGCTGGGGTAAGACGGTGGTTCGGGGGGCGCAGCAGCGACAACAG
CCGGTATTATGACGAGTTCCCCGACGACTTCGACTACGGCTCGGCAGCCG
ACGATGATGCGGACGAGAACAGCAGCAGCAGCGCGGGGGACGGCAGCAGC
GCCTTGTTCTGTTGGCCTGAGGACGAGGAAGAAGCCGCAACGCTTCTGCC
GCAGGAAGGGGAGGACTCGATATCGGAGCTGGATTTGAAAGACGGTATCT
CGTTGGCAGCGGAGAGTTCGCTCTTCCAACAGCAGCAGGAGCAAGGAACC
GGCAGCGGCAGCACTAGCAGCAGTAGCAGACCGGATCGAACGCGCATGTC
GGGGGTTGGGTTCCGAAAGAGCCGGGCGGGGGGAGAGGAGAGGCGTGCTG
ATACAGCGTCGGGGCCGTCTCTAGGGGGTAGGACTGCTGCTGCTGCTGCT
GCTGCTGCTTCACCAGCGCTGGAGAGCAGTACCGCCGGCAGCGCTCCGCT
CCGGTTATTGACAAACCCCGCCGAAGACGAATTCACGGCTCCCTCTGCGG
AAACCCCCGCCGCGAGAGGCGAGCTAGAGGTCGTGGCCCCCGATGACGGA
GATGAGCCCCGTCCAGGCGAGCGTTGGCAGCACCAGCGCTCCGTGCTTGG
TGCTGTAGTCAGCGCGTTGGCGGGTGCCCTGGGATTGAAGCTTTGGGAAG
GGTTGGTGCGAGGCGACGCTAGCGCGGCGGCGGCGGCGGCGGCCGCCGCC
GAGGTTGAAGGAGGGGTGAGCAGGGGCGGGGTAGAGGAGGAGGAGGAGGC
GGCGGCGGCGGCGGCGGTGATGGAGGAAGAAGCTGCGTTGCAGCAGGAGA
AGATCCTGGCGCTAGAGAACCAGTTGGCGCAGTACCGCCGGCAGCGCTCC
GCTCCGGTTATTGACAAACCCCGCCGAAGACGAATTCACGGCTCCCTCTG
CGGAAACCCCCGCCGCGAGAGGCGAGCTAGAGGTCGTGGCCCCCGATGAC
GGAGATGAGCCCCGTCCAGGCGAGCGTTGGCAGCACCAGCGCTCCGTGCT
TGGTGCTGTAGTCAGCGCGTTGGCGGGTGCCCTGGGATTGAAGCTTTGGG
AAGGGTTGGTGCGAGGCGACGCTAGCGCGGCGGCGGCGGCGGCGGCCGCC
GCCGAGGTTGAAGGAGGGGTGAGCAGGGGCGGGGTAGAGGAGGAGGAGGA
GGCGGCGGCGGCGGCGGCGGTGATGGAGGAAGAAGCTGCGTTGCAGCAGG
AGAAGATCCTGGCGCTAGAGAACCAGTTGGCGTACCTGGAAGAAGACCGG
CGGAGAGCGGCGTTGTCGGCGAAGGAGGCGAGGTCGAACAGGCGGAAGGA
CGATCGACAACTCAAGGAGTACGTCCATACGCTAGAGGTTCACCTCGATC
AGTACCTGGAAGAAGACCGGCGGAGAGCGGCGTTGTCGGCGAAGGAGGCG
AGGTCGAACAGGCGGAAGGACGATCGACAACTCAAGGAGTACGTCCATAC
GCTAGAGGTTCACCTCGATCAGCTTTCCAAGGAGAAGCAGGAGTCCGAGA
CGGCGATGCTAGAGGCCGTCAGGGCCGAAACTACGGAGGCTTTGAAGCAG
CTTTCCAAGGAGAAGCAGGAGTCCGAGACGGCGATGCTAGAGGCCGTCAG
GGCCGAAACTACGGAGGCTTTGAAGCAGGGGAGCCACGCCACGGCGGCTG
CGGCGGCGGCAGCGGATGAGGAGGTGCGGCAGGCGAGGGCGGAGCTCGAG
GCTGCGCAGGCGTTGCTAGAAGAGGCCCTGAAGGAGAAGGCGGTGGCGGT
ACAGGAGAAGGCCGCCGGCGACGCCCTCTTGAGGACCGAGCAGGGGAAAA
GAGGGGAGCCACGCCACGGCGGCTGCGGCGGCGGCAGCGGATGAGGAGGT
GCGGCAGGCGAGGGCGGAGCTCGAGGCTGCGCAGGCGTTGCTAGAAGAGG
CCCTGAAGGAGAAGGCGGTGGCGGTACAGGAGAAGGCCGCCGGCGACGCC
CTCTTGAGGACCGAGCAGGGGAAAAGAGCCGCGTTGGAGAAGGAGGTAGA
GAGGCTGAAGGAATCTACGGCCACGCTCATGCAGCGTCTGCTGGACGCGG
TGGCTAAGGCCGAGCGTGCGGACGAGGAGGAGAGCGACGCGGCCACGGCG
AAGGCTGTGGCGGAGCGGGAGGAGATCGAGGCGGCGGTGGCGGCGGCGAG
AGAGGAGGAGACGGCGCGGTGTCGAGAAGAGTTCTATTCTGCTCTCGCGG
AGCCGCGTTGGAGAAGGAGGTAGAGAGGCTGAAGGAATCTACGGCCACGC
TCATGCAGCGTCTGCTGGACGCGGTGGCTAAGGCCGAGCGTGCGGACGAG
GAGGAGAGCGACGCGGCCACGGCGAAGGCTGTGGCGGAGCGGGAGGAGAT
CGAGGCGGCGGTGGCGGCGGCGAGAGAGGAGGAGACGGCGCGGTGTCGAG
AAGAGTTCTATTCTGCTCTCGCGGAGGAAAAGGAGAAGCTCCGCAAGCAG
ATGGAGGTTCGCCTTGCCACCATGCGAGCGGGGCTGAAGCGTCGCCTTCA
GGAGGCGCGGTCAGAGCGCCGCGGGACCACTGGTTCCGTTTCGGGAAGGT
CAATGAGCGACGGAATCACCGCTGGTGGCACCGCATCGGAACGACCAACA
AGCGGCCGCACCACCGGCAGTGGCAACAGCAGCGGCAGCAGCCCGCCGGA
ATAAGAAAAGGAGAAGCTCCGCAAGCAGATGGAGGTTCGCCTTGCCACCA
TGCGAGCGGGGCTGAAGCGTCGCCTTCAGGAGGCGCGGTCAGAGCGCCGC
GGGACCACTGGTTCCGTTTCGGGAAGGTCAATGAGCGACGGAATCACCGC
TGGTGGCACCGCATCGGAACGACCAACAAGCGGCCGCACCACCGGCAGTG
GCAACAGCAGCGGCAGCAGCCCGCCGGAATAA
back to top