mRNA_E-siliculosus-1a_F_contig153.3066.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig153.3066.1
Unique NamemRNA_E-siliculosus-1a_F_contig153.3066.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig153.3066.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 6.840e-59
Identity = 98/104 (94.23%), Postives = 99/104 (95.19%), Query Frame = 1 
Query:    1 MKPVSLTFIASLLGAPAAAVEYMVTTCADLADVDDTQVTGLTIDASTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQVGTGTT 312
            MKPVSLTFIASLL  PAAAVEYMVTTCADLADVDDTQVTGLTIDA+TFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQ   GTT
Sbjct:    1 MKPVSLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEGTT 104
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BLAST of mRNA_E-siliculosus-1a_F_contig153.3066.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 4.820e-50
Identity = 91/102 (89.22%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    1 MKPVSLTFIASLLGAPAAAVEYMVTTCADLADVDDTQVTGLTIDASTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQVGTG 306
            MKP SLT IA LL APAAAVEY V TCADLADVDDTQVTGLTID STFACDEYTRF VRNSMTLKATV+AVEFGNFSLKVLGELTVEPDVTFNGVVDQV  G
Sbjct:    1 MKPCSLTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNG 102
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BLAST of mRNA_E-siliculosus-1a_F_contig153.3066.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.690e-49
Identity = 91/102 (89.22%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    1 MKPVSLTFIASLLGAPAAAVEYMVTTCADLADVDDTQVTGLTIDASTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQVGTG 306
            MK VSLT IASLL APAAAVEY V TCADLADVDDTQVT LTIDASTFACDEYTRFRVRN+MTLKATV AVEFGNFSLKVLGELTVEPDV FNGVVDQV  G
Sbjct:    1 MKTVSLTLIASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNG 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig153.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQG2_ECTSI6.840e-5994.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ44_ECTSI4.820e-5089.22Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI2.690e-4989.22Asn/thr-rich large protein family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig153contigE-siliculosus-1a_F_contig153:775..1086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size312
Model size312
Exons1
Hectar predicted targeting categorysignal peptide
Ec32 orthologEc-01_006220.1
Ec32 ortholog descriptionhypothetical protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.1068945-CDS-E-siliculosus-1a_F_contig153:774..10861622928039.1068945-CDS-E-siliculosus-1a_F_contig153:774..1086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 775..1086 -
1696318783.075261-CDS-E-siliculosus-1a_F_contig153:774..10861696318783.075261-CDS-E-siliculosus-1a_F_contig153:774..1086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 775..1086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig153.3066.1prot_E-siliculosus-1a_F_contig153.3066.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig153 775..1086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig153.3066.1

>prot_E-siliculosus-1a_F_contig153.3066.1 ID=prot_E-siliculosus-1a_F_contig153.3066.1|Name=mRNA_E-siliculosus-1a_F_contig153.3066.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
MKPVSLTFIASLLGAPAAAVEYMVTTCADLADVDDTQVTGLTIDASTFAC
DEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQVG
TGTT
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mRNA from alignment at E-siliculosus-1a_F_contig153:775..1086-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig153.3066.1 ID=mRNA_E-siliculosus-1a_F_contig153.3066.1|Name=mRNA_E-siliculosus-1a_F_contig153.3066.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:775..1086- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGCCTGTCTCTCTCACGTTCATCGCCAGCCTTCTGGGAGCGCCAGC
TGCGGCGGTCGAGTACATGGTCACCACTTGTGCTGACCTTGCGGACGTCG
ACGATACCCAGGTCACCGGCCTTACCATCGACGCTAGCACCTTCGCCTGC
GATGAATACACCCGCTTCCGTGTCCGCAACTCCATGACGCTCAAGGCGAC
AGTCTCCGCCGTGGAGTTCGGGAACTTCTCTCTGAAGGTTCTCGGAGAGC
TGACCGTCGAGCCCGACGTCACGTTCAACGGCGTCGTTGATCAGGTAGGC
ACTGGAACCACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig153:775..1086-

>mRNA_E-siliculosus-1a_F_contig153.3066.1 ID=mRNA_E-siliculosus-1a_F_contig153.3066.1|Name=mRNA_E-siliculosus-1a_F_contig153.3066.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:775..1086- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGCCTGTCTCTCTCACGTTCATCGCCAGCCTTCTGGGAGCGCCAGC
TGCGGCGGTCGAGTACATGGTCACCACTTGTGCTGACCTTGCGGACGTCG
ACGATACCCAGGTCACCGGCCTTACCATCGACGCTAGCACCTTCGCCTGC
GATGAATACACCCGCTTCCGTGTCCGCAACTCCATGACGCTCAAGGCGAC
AGTCTCCGCCGTGGAGTTCGGGAACTTCTCTCTGAAGGTTCTCGGAGAGC
TGACCGTCGAGCCCGACGTCACGTTCAACGGCGTCGTTGATCAGGTAGGC
ACTGGAACCACAATGAAGCCTGTCTCTCTCACGTTCATCGCCAGCCTTCT
GGGAGCGCCAGCTGCGGCGGTCGAGTACATGGTCACCACTTGTGCTGACC
TTGCGGACGTCGACGATACCCAGGTCACCGGCCTTACCATCGACGCTAGC
ACCTTCGCCTGCGATGAATACACCCGCTTCCGTGTCCGCAACTCCATGAC
GCTCAAGGCGACAGTCTCCGCCGTGGAGTTCGGGAACTTCTCTCTGAAGG
TTCTCGGAGAGCTGACCGTCGAGCCCGACGTCACGTTCAACGGCGTCGTT
GATCAGGTAGGCACTGGAACCACA
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