mRNA_E-siliculosus-1a_F_contig1529.3059.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1529.3059.1
Unique NamemRNA_E-siliculosus-1a_F_contig1529.3059.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1529.3059.1 vs. uniprot
Match: D8LMP0_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP0_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 9.230e-37
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:   16 EEVVRRGERAGGVGLEPLELPRPPTGPNASGGKPEDDVEESPRSSPLGQGPGLQAIAFEAAESGKASPSLSGGAG 240
            EEVVRRGERAGG+GLEPLELPRPPTGPNASGGKPEDDVEESPRSSPLGQGPGLQAIAFEAAESGKASPSLSGGAG
Sbjct:  164 EEVVRRGERAGGLGLEPLELPRPPTGPNASGGKPEDDVEESPRSSPLGQGPGLQAIAFEAAESGKASPSLSGGAG 238
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BLAST of mRNA_E-siliculosus-1a_F_contig1529.3059.1 vs. uniprot
Match: A0A6H5KXW6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.110e-35
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:   16 EEVVRRGERAGGVGLEPLELPRPPTGPNASGGKPEDDVEESPRSSPLGQGPGLQAIAFEAAESGKASPSLSGGAG 240
            EEVVRRGE+AGGVGLEPLELPRPPTGPNAS G PEDDVEESPRSSPLGQGPGLQAIAFEAAESGKASPSLSGGAG
Sbjct:  162 EEVVRRGEKAGGVGLEPLELPRPPTGPNASAGNPEDDVEESPRSSPLGQGPGLQAIAFEAAESGKASPSLSGGAG 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1529.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMP0_ECTSI9.230e-3798.67FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXW6_9PHAE3.110e-3596.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1529contigE-siliculosus-1a_F_contig1529:391..2418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size240
Model size240
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG2930@1,KOG1843@2759
EggNOG free text desc.regulation of ruffle assembly
Seed eggNOG ortholog2880.D8LMP0
Seed ortholog evalue6.5e-32
Seed ortholog score142.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1529.3059.1prot_E-siliculosus-1a_F_contig1529.3059.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1529 391..2418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.3563173-CDS-E-siliculosus-1a_F_contig1529:390..4531622928038.3563173-CDS-E-siliculosus-1a_F_contig1529:390..453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 391..453 -
1696318782.7611537-CDS-E-siliculosus-1a_F_contig1529:390..4531696318782.7611537-CDS-E-siliculosus-1a_F_contig1529:390..453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 391..453 -
1622928038.3733666-CDS-E-siliculosus-1a_F_contig1529:1265..13791622928038.3733666-CDS-E-siliculosus-1a_F_contig1529:1265..1379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 1266..1379 -
1696318782.770182-CDS-E-siliculosus-1a_F_contig1529:1265..13791696318782.770182-CDS-E-siliculosus-1a_F_contig1529:1265..1379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 1266..1379 -
1622928038.3864338-CDS-E-siliculosus-1a_F_contig1529:2355..24181622928038.3864338-CDS-E-siliculosus-1a_F_contig1529:2355..2418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 2356..2418 -
1696318782.7778828-CDS-E-siliculosus-1a_F_contig1529:2355..24181696318782.7778828-CDS-E-siliculosus-1a_F_contig1529:2355..2418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1529 2356..2418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1529.3059.1

>prot_E-siliculosus-1a_F_contig1529.3059.1 ID=prot_E-siliculosus-1a_F_contig1529.3059.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3059.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
GGGGAEEVVRRGERAGGVGLEPLELPRPPTGPNASGGKPEDDVEESPRSS
PLGQGPGLQAIAFEAAESGKASPSLSGGAG
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mRNA from alignment at E-siliculosus-1a_F_contig1529:391..2418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1529.3059.1 ID=mRNA_E-siliculosus-1a_F_contig1529.3059.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3059.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2028bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1529:391..2418- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGGCGGTGGGGCGGAGGAGGTTGTGCGGAGGGGAGAAAGGGCCGGCGG
GGTCGGGTTGGAGGTGAGAGACAGCCCCATGTGTCGCTGTTGTCCTTTGA
GCCGTCGAAGCGTTTGCCGTGGAAACCATTCTGTGACGGGGATCACACGG
GGGGCACTCGACCGAACACGTTCGGGCGCTCCCCGCGGGGTTTGTTTCGC
ATGTCTTGCCTGTCTTGCATGTCGATAGTGTGCTTTCTCTTCTTTGGGGT
TGCAGGCGTCAGCCGCCTACGTCAGGCCTTTACGAAGGACACTGCACGGC
ACCCAGGGCATGGCAGTTGCGCGAAGGCGTTGGTCGTGCCCGTTGTCTCC
GGCCCCTCCCTCCGCTTTCGATGCGTCCCTCTTCGTGTTTGTCCCTTCTT
CTCTCGTTCCCGCCTTTCGCGGCCGTCGTCTGCGAATGTTGTTCACATAG
CGGTCGTTTTTTTCGCATCTATTTTTGTACCGCAGCGGGGGGTTGGAGGT
ACCTTGTGTTGCCTCGCTAAATCTTTGTGCCTTTGGCCACGACTTCTAGT
CGAGACCGCGCGCCTGGCGGCGTTGCGCAAGGAGTAGGAGGAGAGGGGGG
GGGGAGAACGTCGTGCACGTATCGACAAGACAAGCCACCGTGAACTATAA
TAGCCTCTACCAACACCTGCCTCCCTTTGCGTTGGTTTCTGCTCGAGTGT
CGATTTTTTTCCAGAAGCAACTCGTTGGCAGTTAGTACTCGGCATCTGTT
TGGTCCAGCACGTGCCGATCAACTGTGCGCCGTCCGTCCGTCGTTTGGAC
CTTACAGTGTTCTATCTATAAATGATTCTGTCATTTCCTTGCTTTTGCTC
TCTACTTTCAACTGTCTTTTGCTCGACTTCACGAGCCTTTTTTTCTTTTT
TTTCCTACCAATCAGTATGCCCCATTCGGTTGCTTTGCTTACGTGCGATG
CCCTCCCAAATGACGATGAATTCTCCTGTTCGATGGACGTTCACCACTAC
TAACTTGATCATGTGCTCTCTCTCGCATGTGGTACCTAGCCGCTGGAGTT
GCCCCGGCCACCCACCGGGCCGAACGCTTCCGGTGGAAAACCCGAGGACG
ATGTCGAAGAATCCCCTAGGTCTTCTCCGCTGGGCCAAGGCCCCGGCTTA
CAGGTGAAACGCCATCCTTCTCTTTTCATCTAGGGCGCAATATTCAAGAT
TTCTTCTTGACTCTTTCCGCTCTCTCTCTGAACGAGGGTCGGGGTTCCTC
CATGTGGCCTTAGTTTTTCGGGGTTCCGTTTGGTCTTTAATTTCGCGGGT
TTTCCACGGAATATAACCGTTACCACCCAGCCCGGGATACTCCTTGTGCT
CGCACTCTCACACCGAGGTATTGTAGGACAGTGACGTATCCAGCTCCATA
GCTCCGCGGGCGGGACGCAGGCTCCACCGACAGTAAAAACGGCAGACGGG
TGCGGAGAATTTCCTCGGTTGTTCGTTTCCGACTTCCCGTGGTGGCGTGC
GTGTCGACTTTGCTCGGTCACCTCAATAAATCGGCCAGGCTTAGGATCCC
CGCTCCACCCCCTCTCTTTTTGTCATCGCGGGATCTGCTGTACACTACGT
GGCGGTGACATCACTAGGACACTGCGTTTCCTAGAGCGACTTTTGTTTTG
GTTAAGATTTCTGTACTATTTTCAAGCGCTGGCCCCGCATCTTGATGACA
AGAGCGGACCTACTGCCGTGTTGGCGTTGTGACTTGCCTACACTAGTGCA
GAGCAGTCAGTCAGTTGAGAGGGTTGTCGTCGCAGGCTGATTTCCTGCTC
GTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTTCT
GCTTCTGTTGTTGCTGCTGCCGTGCTGCCGCTGCTTCTGATGTTGTTGCT
GCCGCTGCTGCTGCCGCTGCTGCTGCTGCTTCTTTATTGCCGATACTTTG
TAAATCTTGGAACAGGCGATTGCCTTTGAAGCGGCAGAGTCGGGGAAAGC
CTCTCCTTCGTTATCCGGCGGGGCGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1529:391..2418-

>mRNA_E-siliculosus-1a_F_contig1529.3059.1 ID=mRNA_E-siliculosus-1a_F_contig1529.3059.1|Name=mRNA_E-siliculosus-1a_F_contig1529.3059.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1529:391..2418- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGGCGGTGGGGCGGAGGAGGTTGTGCGGAGGGGAGAAAGGGCCGGCGG
GGTCGGGTTGGAGGGCGGCGGTGGGGCGGAGGAGGTTGTGCGGAGGGGAG
AAAGGGCCGGCGGGGTCGGGTTGGAGCCGCTGGAGTTGCCCCGGCCACCC
ACCGGGCCGAACGCTTCCGGTGGAAAACCCGAGGACGATGTCGAAGAATC
CCCTAGGTCTTCTCCGCTGGGCCAAGGCCCCGGCTTACAGCCGCTGGAGT
TGCCCCGGCCACCCACCGGGCCGAACGCTTCCGGTGGAAAACCCGAGGAC
GATGTCGAAGAATCCCCTAGGTCTTCTCCGCTGGGCCAAGGCCCCGGCTT
ACAGGCGATTGCCTTTGAAGCGGCAGAGTCGGGGAAAGCCTCTCCTTCGT
TATCCGGCGGGGCGGGGGCGATTGCCTTTGAAGCGGCAGAGTCGGGGAAA
GCCTCTCCTTCGTTATCCGGCGGGGCGGGG
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