mRNA_E-siliculosus-1a_F_contig1526.3044.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1526.3044.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1526.3044.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: D7FL75_ECTSI (DNA-damage repair protein drt111, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL75_ECTSI)

HSP 1 Score: 568 bits (1465), Expect = 4.700e-199
Identity = 389/420 (92.62%), Postives = 389/420 (92.62%), Query Frame = 1

Query:   73 MDIYADLPSAKPSADVAXXXXXXXXXXXXXXXKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARPSKTXXXXXXXXXXXXXETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIXXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTKGKGGTPGSPEMREPPTPAXXXXXVPGQLDAVPEAGQRGGRFGPQAKAGGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 1332
            MDIYADLPSAKPSADVA     XXXXXX    KGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARPSK XXXXXXXXXXXXXETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKI XXXXXXXXXXXX  RAATIKKIQEAAAKSHEVGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTKGKGGTPGSPEM                LDAVPEAGQRGGRFGPQAKAGGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPA PARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK
Sbjct:    1 MDIYADLPSAKPSADVAVASAAXXXXXXSPASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARPSKXXXXXXXXXXXXXXETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIIXXXXXXXXXXXXEERAATIKKIQEAAAKSHEVGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTKGKGGTPGSPEM---------------PLDAVPEAGQRGGRFGPQAKAGGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAAPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 405

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A6H5KK36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK36_9PHAE)

HSP 1 Score: 566 bits (1459), Expect = 3.970e-198
Identity = 382/420 (90.95%), Postives = 386/420 (91.90%), Query Frame = 1

Query:   73 MDIYADLPSAKPSADVAXXXXXXXXXXXXXXXKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARPSKTXXXXXXXXXXXXXETPSPAASRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDRELKIXXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTKGKGGTPGSPEMREPPTPAXXXXXVPGQLDAVPEAGQRGGRFGPQAKAGGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 1332
            MDIYADLPSAKPSA+VA    XXXXXXXXX  KGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPG   AAGARP+KT       XXXXX ET SPAA+RPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERD     XXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXX LSNLPAWVTKGKG TPGSPEM EPPTPA     VPGQLDAVPEAGQRGGRFGPQAKAGGAG+GGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAP ARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK
Sbjct:    1 MDIYADLPSAKPSANVAVASPXXXXXXXXXASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGXXXAAGARPNKTISKAESSXXXXXKETTSPAATRPQSWDMGFGDVDDDYDPARPNDYMEYCRERIDKKKQEERDXXXXXXXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXXLSNLPAWVTKGKGATPGSPEMLEPPTPARRPPPVPGQLDAVPEAGQRGGRFGPQAKAGGAGIGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPAARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 420

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A835ZCV1_9STRA (Putative DNA-damage repair protein drt111 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.030e-30
Identity = 131/337 (38.87%), Postives = 155/337 (45.99%), Query Frame = 1

Query:  355 PSPAASRPQSWDMGFGDVD--DDYDPARPNDYMEYCRERIDKKKQEERDRELKIXXXXXXXXXXXXXXXRAATIKKIQEAAAKSHEVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAAMDXXXXXXXXXGLSNLPAWVTK--GKGGTPGSPEMREPPTPAXXXXXVPGQLDAVPEAGQRGGRFGPQAKAGGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARK---------KRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYE 1326
            P  +     S + GF D D  D YDPARPNDYM YC+ RI+ K+QEER+RELK                           A    +   XXXXXXXXXXXXXXX                        A            G+ NLPAW+TK   +GG              XXXXX                   P                 GM  A+ +MAKMG +EG+GLG S QGISQP+ + S G GMG + MH +D+KR       PA  A           KRGLFSNPT VLLLKNMVG GEVD +LEGE   EC ++GPVR+CL+ E
Sbjct:   71 PHASTQSASSEESGFNDRDVPDPYDPARPNDYMAYCKYRIETKRQEERERELK---------------------------AIMEEQRXXXXXXXXXXXXXXXXXLPPQLQAKLGAAPLLPPMAGLAPPAVPGPPAGRGRGRGMVNLPAWLTKMQQEGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSP----------------GGMALAQSLMAKMGWQEGKGLGKSGQGISQPIVAQSTGVGMGTVAMHPADRKR-------PAQAAXXXXXXXXXSAKRGLFSNPTCVLLLKNMVGAGEVDSDLEGEVKEECMKYGPVRQCLVRE 357

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A6U3SBK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SBK6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.500e-28
Identity = 62/120 (51.67%), Postives = 76/120 (63.33%), Query Frame = 1

Query:  979 ESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMH--HSDKKRMGGPSDTPAPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK 1332
            + G N A  MM  MG  +G+GLG   QGIS+PL++   GGG G +       ++K        P P A+KKR LF NPT VLLLKNMVGPGEVD ELE E   EC +FGPVR C++YE+K
Sbjct:   25 KGGGNLAMNMMKGMGWTDGEGLGREGQGISRPLEARPTGGGQGAVANPGARGNQKLSTSMLPPPGPAAKKKRALFRNPTTVLLLKNMVGPGEVDSELEKEVQEECSKFGPVRTCVVYELK 144

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: W7TGN1_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGN1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.510e-24
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 1

Query: 1009 MAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARK-----KRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEI 1329
            M K+G++EG GLG  RQGI++ +++ + GGG GVI       K   G  D             KRGLFSNPT+++LLKNMVGPGEVDD+L+GET+ EC + GPV  CL++E+
Sbjct:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGK---GAQDVDRQQXXXXXXXXKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEV 109

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A078FCH5_BRANA (BnaC03g59760D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078FCH5_BRANA)

HSP 1 Score: 104 bits (259), Expect = 1.460e-21
Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1

Query:  988 MNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEI 1329
            M  AERMMAKMG K+GQGLG S QGI+ PL +       GVI ++ S+KK + G S            +   PTRVLLL+NMVGPGEVDDELE E   EC ++G V R LI+EI
Sbjct:  125 MTAAERMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVI-VNASEKKVVKGVS------------ISGEPTRVLLLRNMVGPGEVDDELEEEVGTECGKYGTVTRVLIFEI 225

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A8D9M5D0_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9M5D0_BRACM)

HSP 1 Score: 104 bits (259), Expect = 1.540e-21
Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1

Query:  988 MNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEI 1329
            M  AERMMAKMG K+GQGLG S QGI+ PL +       GVI ++ S+KK + G S            +   PTRVLLL+NMVGPGEVDDELE E   EC ++G V R LI+EI
Sbjct:  128 MTAAERMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVI-VNASEKKVVKGVS------------ISGEPTRVLLLRNMVGPGEVDDELEEEVGTECGKYGTVTRVLIFEI 228

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A7J9F154_9ROSI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9F154_9ROSI)

HSP 1 Score: 103 bits (257), Expect = 1.580e-21
Identity = 64/128 (50.00%), Postives = 74/128 (57.81%), Query Frame = 1

Query:  949 GAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSNP-TRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEI 1329
            G G GGG      M  A+RMMAKMG KEGQGLG   QGI+ PL +       GVI             S+T  P  + K   F+ P TRVLLL+NMVGPGEVDDELE E   EC ++G V R LI+EI
Sbjct:   82 GVGAGGGQ-----MTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIV----------NASETSKPDKKVKSVSFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEI 194

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A2P2JRV5_RHIMU (DNA-damage-repair/toleration protein DRT111 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JRV5_RHIMU)

HSP 1 Score: 102 bits (253), Expect = 1.660e-21
Identity = 65/130 (50.00%), Postives = 79/130 (60.77%), Query Frame = 1

Query:  946 GGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSN--PTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEI 1329
            GG GVG    A   M  A+RMMAKMG KEGQGLG   QGI+ PL +       GVI ++ S+ K           P +K + +  N  P+RVLLLKNMVGPGEVDDELE E + EC ++G V R LI+EI
Sbjct:   27 GGLGVG----ARGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLLAKKTDRRAGVI-VNASETK-----------PEKKVKSVNFNGLPSRVLLLKNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEI 140

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BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Match: A0A3P6BYG9_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6BYG9_BRACM)

HSP 1 Score: 104 bits (259), Expect = 1.720e-21
Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1

Query:  988 MNFAERMMAKMGHKEGQGLGASRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFSNPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEI 1329
            M  AERMMAKMG K+GQGLG S QGI+ PL +       GVI ++ S+KK + G S            +   PTRVLLL+NMVGPGEVDDELE E   EC ++G V R LI+EI
Sbjct:  134 MTAAERMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVI-VNASEKKVVKGVS------------ISGEPTRVLLLRNMVGPGEVDDELEEEVGTECGKYGTVTRVLIFEI 234

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1526.3044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FL75_ECTSI	4.700e-199	92.62	DNA-damage repair protein drt111, putative n=1 Tax...	[more]
A0A6H5KK36_9PHAE	3.970e-198	90.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835ZCV1_9STRA	1.030e-30	38.87	Putative DNA-damage repair protein drt111 n=1 Tax=...	[more]
A0A6U3SBK6_9STRA	1.500e-28	51.67	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
W7TGN1_9STRA	1.510e-24	49.11	RNA binding protein n=1 Tax=Nannochloropsis gadita...	[more]
A0A078FCH5_BRANA	1.460e-21	52.63	BnaC03g59760D protein n=1 Tax=Brassica napus TaxID...	[more]
A0A8D9M5D0_BRACM	1.540e-21	52.63	(field mustard) hypothetical protein n=1 Tax=Brass...	[more]
A0A7J9F154_9ROSI	1.580e-21	50.00	Uncharacterized protein n=2 Tax=Gossypium TaxID=36...	[more]
A0A2P2JRV5_RHIMU	1.660e-21	50.00	DNA-damage-repair/toleration protein DRT111 n=2 Ta...	[more]
A0A3P6BYG9_BRACM	1.720e-21	52.63	Uncharacterized protein n=1 Tax=Brassica campestri...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1526	contig	E-siliculosus-1a_F_contig1526:765..6764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	0
Stop	0
Cds size	1332
Model size	1334
Exons	8
Ec32 ortholog	Ec-19_005230.1
Ec32 ortholog description	G-patch domain
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko03041
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	O
EggNOG OGs	KOG1996@1,KOG1996@2759
EggNOG free text desc.	regulation of RNA splicing
GOs	GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001654,GO:0001745,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009507,GO:0009536,GO:0009653,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048024,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090596,GO:1901360,GO:1903311
KEGG Pathway	ko03040,map03040
KEGG ko	ko:K12840
Preferred name	RBM17
Seed eggNOG ortholog	2880.D7FL75
Seed ortholog evalue	5.4e-160
Seed ortholog score	570.9
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1526.3044.1	prot_E-siliculosus-1a_F_contig1526.3044.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1526 765..6764 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1526:765..6764-
coding sequence from alignment at E-siliculosus-1a_F_contig1526:765..6764-

protein sequence of mRNA_E-siliculosus-1a_F_contig1526.3044.1

>prot_E-siliculosus-1a_F_contig1526.3044.1 ID=prot_E-siliculosus-1a_F_contig1526.3044.1|Name=mRNA_E-siliculosus-1a_F_contig1526.3044.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=444bp
PVLPDRERWCVLLRTQQEPREYIQMDIYADLPSAKPSADVAVASPATAAA
SASPASKGSWAHSKFQGMIANRRTAKAATSRMAPPTLKRPGPPSAAGARP
SKTKSKAESSTPTKSKETPSPAASRPQSWDMGFGDVDDDYDPARPNDYME
YCRERIDKKKQEERDRELKIIMEEQERERKRQDEERAATIKKIQEAAAKS
HEVGGGGPGAAGGGVGIGGGGIGAPAMAGVGRGRGGGGGPGHDVAAMDAS
MGRGRGRGLSNLPAWVTKGKGGTPGSPEMREPPTPARRPPPVPGQLDAVP
EAGQRGGRFGPQAKAGGAGVGGGSAAESGMNFAERMMAKMGHKEGQGLGA
SRQGISQPLQSMSAGGGMGVIDMHHSDKKRMGGPSDTPAPPARKKRGLFS
NPTRVLLLKNMVGPGEVDDELEGETSGECERFGPVRRCLIYEIK

mRNA from alignment at E-siliculosus-1a_F_contig1526:765..6764-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1526.3044.1 ID=mRNA_E-siliculosus-1a_F_contig1526.3044.1|Name=mRNA_E-siliculosus-1a_F_contig1526.3044.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6000bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1526:765..6764- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTGTGCTGCCAGACAGAGAGCGTTGGTGTGTGTTGTTGAGAACGCAGCA
AGAGCCAAGAGAGTACATACAGATGGATATATACGCAGACCTTCCGTCGG
CGAAGCCTTCCGCGGATGTCGCCGTCGCCTCGCCGGCCACCGCTGCTGCT
TCGGCGTCCCCGGCCTCGAAAGGATCATGGGCCCACTCCAAGTTCCAAGG
GATGATCGCCAACCGGAGGACGGCCAAGGCTGTGAGTGTGCTTTGTTGTG
TGCTGTTTATCTATGGGACACATCGAGAGTGTTTACTGCTGTAACTGCTG
TGTAGTGGTGTGCTGCAACACACTGAGAAAATTGCCCCGTGTGCAATGGC
GATGGCGACCTAGAGTGCGGTTCAAACCTAAGAAAACGAGTCTTGCTCTC
GAGGAACCGCAGGTGACATGACACAGGATACCATACCCCCTGGACCGATT
TTTGAAAGCTCCATTACTCCACGCCGAAGAGGATGGATACATATGAAACG
ATACTTTTTCGGAAAGCTCTCAACGAGACGGCTTCAGAACCACCGTTTTT
GGCGCTGCCACTCTTTCTACTGTGGAGAAACCGAGGTTTGAATCTCGGTC
CATGGGGTGTGATATCTTGCGTCATCTCGGCAAGACTATGTCGCAATCAA
TCCGTGTGAGGCACAAGCCACCAGCTCGTGCTGTAGTAAATTAGGCTACA
AGGCTAAATGCAGAGGTGGAGAAAACACGACAGGCATTGTGGGGTGCGGT
GGAATTCGAAGAATCACGTCAGGAGGTAACTCCGAGGCGTTAGTCACGAA
ATTGCGTATGGGAAGATCCGACTCACAACCAGCCGGCGGTGTACCTACCC
TGTCAACCACGGACACACTTTGCTAAACACATGCCGTATCCGTGCAGGAT
TGTTTAGGGATGCACGTGGCAGATGGTGAACAGAAAACCATACTCTGGAG
CGCGCAACATCTGTATCGCATGCAACTGCTGCTGCTGTTTCGCGTGTGTA
GGTTCCTGACCCCCGCCCCCCGCCGTCCCCCGTGGTGTGCTTTAGGCAAC
TTCGAGGATGGCACCGCCTACCCTGAAACGCCCAGGACCCCCTTCCGCCG
CCGGCGCTCGCCCCAGCAAGACCAAATCCAAGGCGGAAAGCTCTACCCCC
ACAAAGTCTAAGGTACCATTGAGCTATGCGTGCGTCGATCAATAGACTCT
GGGGTAAAATGCGGACTATTATACTCAGTGCTGTCTGCGTGCGCCCGAGG
TGGGTCAACTTGTGTGTCTGTGCAGTAACCGTCTCGAAGATGCTAAGCTT
GGTCGTAGTAGGGAGGCTTGGTCTTAGTAGGGAGCACCGGGGAGGGTCAG
GGTTAGGGATACGAAGGCGGTCCTGTGTGTGGCAGTGGGTCGACGGGGCA
GGGGGGGGGTAGAGGAACGATGTCCCAGTGGAAGTGAAGGAAGACCCAAC
TAACAGGTTCAACAGGGATGCGCCGGGGGAAGGAACGGTTTCAGACCCAA
AAGGTCAAGGTTTGTGACGCCTCGGCCATCGCGCGCCCGTTTAGCAACCT
ATGTCAAACCGTTCGACGCAGTCAACGCTTATTGGTCTATAATGGGCTTT
TTGAACCGCCCAAGTCAAACCGTCATAGACCAGTTGGCGCTAGGTCTGAA
GGGATTTTCAGCAGCCGATTATATTAGACCGGTCAGCGCTGGCTGGTCTA
ATGGCTTGGTTGTGCTTGCTCTAGCCTACCTTGGATGTTGGGAGCGAGCG
CAATCGCGGCTGCCGACCAACTCTGCTCGTCCTGCACCCCCCTCCACCCT
TCTTTCCATTTTGTTTGTTTCTATCTCCTAAACGAATGCCCTTGCACCGT
CCTAACCCCTTGTTACATGTTTCACCCTCCAGGAAACCCCTTCTCCGGCC
GCGAGTAGGCCTCAGTCGTGGGATATGGGGTTCGGGGACGTAGATGACGA
CTACGACCCGGCTCGCCCCAACGACTACATGGAATACTGCCGAGAGAGGA
TCGACAAGAAGAAGCAGGAGGAGCGGGATAGGGAGCTCAAGATTATCATG
GAGGAGCAGGAGCGAGAGGTGCGTGGAATGCTCCCTGCTTTTTCCCGTGG
TACTCTTTTGCCTGCGGTTCCGTGGTAGCTAATCGTGATTGTTTAGCGTT
TCCCGAGGAAGAACCGGGAGAGCAAGCCCCCCCCCCCCCCTCCTGTCAAT
CTTCGGGATTGATCTGATTTGAAGTGGGGTGACATCGTAGCTGTACAGCC
CAGTCGGCGCGCTCACACGCTGCAGCGAAGGCCTCATGAACGGCGGAGAC
AAGCTTCTTGGTTTGCCTTTCGCACAAAAGCCCGAAGGCGCATGTAAAAA
AATTAGTTTTGACGGCCGCCATCCGCCGCCGACGCACAAACACTTGCAAT
GTTTTTCTAGCGGAAACGCCAAGACGAGGAGCGAGCAGCCACGATCAAGA
AGATCCAAGAAGCGGCCGCTAAGTCGCACGAGGTGGGAGGGGGGGGTCCA
GGGGCGGCAGGGGGGGGCGTTGGGATCGGAGGCGGAGGAATCGGCGCACC
AGCGATGGCAGGCGTGGGTAGAGGGCGCGGTGGTGGCGGTGGTCCCGGGC
ACGATGTGGCGGCCATGGACGCGAGTATGGGACGCGGGCGAGGTCGCGGG
CTTTCCAACCTTCCGGCGTGGGTTACCAAGGGGAAGGGGGGCACGCCGGG
TTCTCCGGAGATGCGGGTAAGGGGGAGGAGGGCGTTTTTAAGGCAAAGAA
ATGTTCACACCCTGTACAACTTTAACTAATAACTAACTGAGTTAGTTGTT
TGCCAGACAACTACCGGCTAGTTGTCTTACGGGCAACTAGGTGCACAAGC
TCCTGGAAGAGTAGTTGTCTGCAGGCAACTAGGTGCACAAGCTCCTGGAA
GAGTAGTTGCCTGCAGGCAACTAGATGCACTAGCTCGTGGAAGAGTAGTT
GTCTGCAAGCAACTAGGTGCGCACGCACCTGGAAGAGTAGTTGTCTGGCA
AGCAACTACCGACTAAAGTAGTTGTACAGGGCGTGGAAATTTGTCCCTGT
CTTGATCCAGTGATACGTACGTGGTTGACGAGAAACCAAAATTGGTCATT
GATTAATCGAAGACCAAATAAATATCGTTGCTGGGGTTCGGCAGAGCATG
TTGATTTCCATTGAAAATCATTTCCTGGTGAGGATTGTATGTATCCGTTC
TCCAGCCCCTCTAACCATAATGTTTTTTTTCGCCCAGCAGAGCCAAGTGT
TGTTTTATATTGTGGTTTTGATAGTTCGAACATGGTTACTTGGTCTAGGC
CCCGGCTGCTGGAGAAGCCGGGTGGACGCCTGCTTACTCGAAAGAACCAC
CGCGCGGGACACAAAACGCGGGGAACCAGCTTGGGCTGAAATCCTTACAC
TTACGTTGGACAAGCTCTTCATCACGTCTTGTGATTAATTTCTGCGGCTG
GACACCACCATGTTGGTGCGGTTTTTTAGGGTCAACAGGGCTCTTTTTTG
CACTGGACGAGGATAACATTTCAGCTTTTCCGTATCCCCCCCCCCCCCCC
CCTCCAAAAATCAATCTATGTATAGGAACCCCCTACTCCTGCAAGGCGTC
CCCCTCCTGTCCCCGGTCAGTTGGATGCTGTTCCTGAGGCCGGCCAACGA
GGTGGAAGATTCGGCCCCCAGGCTAAGGCTGGTGGTGCTGGTGTCGGGGG
CGGGTCTGCGGCAGAGAGCGGGATGAACTTTGCCGAGCGCATGATGGCCA
AGATGGGTCACAAAGAGGGACAAGGTGGGGAGCTGGTGGGGTTTGGATGA
AGACGAAGATAGTAGGCGTCGATCATTCTTGTTTTCGCCGCGACTCGGGA
TTGAGATTTTAAGCGATTTGGCGATGGGGGGAGGGGTTGGGGCATGCTGT
TTGGTCAGACCGCGCGTGCGTCTTCCGTTCTACCCGTCCCCTCTCCCATC
TACAGAACGCCTGCTGCGTCATGAATTTGTTTCGGACGGAATAGAAATGA
TGAGGGAATAACTTTGAATGCTATCCAGCTGTAAGTGCTCGACCTCTGGC
CAACACGCGAACGGGAAACAAGAGATCTTTTCGCAAAAGGGCGTGCATGT
TGATTGCGTTTGCTGTGTTGCTGAACGACAGCGATGATTGTCGTGGCACC
TCCCTCATGTCTCTGTTGATGTTGACGTCCCCCTTGCGGTTCCCCACATC
TATTTGGAGGAATGTAACTATAATTAAAAAAGACGAATTTCACACGCGTT
TCGGCCCGTGTCCTTAAACGTTTTGATTCTCGCGGGGTGTGCACATGTAG
CGTCCAAGCGCGATCGATTGACGACACCCGCCCTCGCCCTCGCCCTCGCC
GTCTCTCTGTCTCTCCCTCTGTGTCCCTGTCTCGTCTGTCTGTCTGTCTG
TCTGTCTGTCTTTCCCTCTGTGTCCCTGTCTCTCTCTCTCTGTGTCTGTC
TCTGTCTGTCTCTGTCTGTCTGTCTGTCTGTCTATCTCTCTCTCTGTGTG
TCTGTCTCTCTCTCTCTGTGTCTGTCTCTGTCTGTCTGTCTGTCTATCTC
TCTCTCTGTGTGTCTGTCTCTCTCTCTCTCTGTGTCTGTCTCTGTCTGTC
TCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCGTTCTGTGTGTGTC
AGGCTTGGGAGCCTCGAGGCAGGGTATAAGCCAGCCGCTGCAGTCCATGT
CGGCCGGAGGCGGGATGGGGGTGATCGACATGCACCATTCCGACAAGAAG
AGGTGGGTTGCCCTTTGCGCAACAATTCCAACAACGTTTTCGGTGGCATG
GCCTGGCTGGCCCGCAACTCGATTGGCAAATTTCCACGTACATATTTTCC
CCCGAAAAGGGCGCGCACCTCAATGGGGCGGCTTGCAGTGTGGTCGGGGT
TTGAACGTTTGAACCAGGCGTTTGTATTGTGAAGTCTGCCTCAAGGTTTC
ATGCCGGTTACAGGGGATCAGGAATGTTTCCAAAGGCGGGTTATCGAACT
TCTCGACCAAACTTAAGGTTGTTTTGGGTCGCAGGACATGACGTTGTTTT
TCATCTCGTTTTTTCATTTTTCGGGATTTTTGTGATGACCGGGTCAATCA
ATCCGCTGTGACGAATACCGGCCTTTGAGTTCCGCGGTGGCACCGCTCAT
CCCCTCTCCCCTGCTTGTGCAGCCAGGTTCTGCTAAGCGTTATTGAAAAA
TATCACACCATCGCCACTCTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGCGCGCCGCGNNNNNNNTGCAGCCGGGTTTTGGTAA
GCGTTTTTGAAAAATATCCAACCCTCGCCCCTCTTGCCCCCCCCCCCCCC
CCAACGACAACACCCCCTCCCCTTGCTCTTGCATGTGCCCACCCCACCTT
GATCGTGCGCGTAAACCAGAATGGGAGGCCCGTCGGATACACCGGCGCCC
CCAGCACGGAAAAAGCGGGGACTGTTCTCGAATCCCACAAGAGTCTTGCT
CCTCAAGGTACGAGGCACCAGAGCTTGTTGCCTGATCCGACACGAGCACT
CGCTTTTTGGTTCTGGTTCTGGGGGGTTTGCCTCACTTTTGGTGGCGGTT
TTTTCGACCTACGGGCGCTTTGTTGCTCTGAGTAATGTGCTTTTTGTCCT
GCTCTGTGGTTTGCCTCCACTTTTCTCTTTGTGCAGAACTCAATTTAGTC
AGGTGAAAACGCGCACATACATTTTTGTGTTAAAACCAGGTCTTATCGGC
TACCACCTGGCAACAATGTAAGACTGGCGTGTGGTCGCTTGCACGTGTGG
GCTCCTGTTTCATTCGCGCGCCCGCTGGTGTGTGTGTTTGTGCAGAATAT
GGTGGGGCCGGGGGAGGTGGATGACGAGCTTGAAGGGGAGACTTCCGGGG
AGTGCGAGCGATTCGGGCCCGTCCGTCGATGTCTCATCTACGAGATCAAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1526:765..6764-

>mRNA_E-siliculosus-1a_F_contig1526.3044.1 ID=mRNA_E-siliculosus-1a_F_contig1526.3044.1|Name=mRNA_E-siliculosus-1a_F_contig1526.3044.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2664bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1526:765..6764- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTGTGCTGCCAGACAGAGAGCGTTGGTGTGTGTTGTTGAGAACGCAGCA
AGAGCCAAGAGAGTACATACAGATGGATATATACGCAGACCTTCCGTCGG
CGAAGCCTTCCGCGGATGTCGCCGTCGCCTCGCCGGCCACCGCTGCTGCT
TCGGCGTCCCCGGCCTCGAAAGGATCATGGGCCCACTCCAAGTTCCAAGG
GATGATCGCCAACCGGAGGACGGCCAAGGCTCCTGTGCTGCCAGACAGAG
AGCGTTGGTGTGTGTTGTTGAGAACGCAGCAAGAGCCAAGAGAGTACATA
CAGATGGATATATACGCAGACCTTCCGTCGGCGAAGCCTTCCGCGGATGT
CGCCGTCGCCTCGCCGGCCACCGCTGCTGCTTCGGCGTCCCCGGCCTCGA
AAGGATCATGGGCCCACTCCAAGTTCCAAGGGATGATCGCCAACCGGAGG
ACGGCCAAGGCTGCAACTTCGAGGATGGCACCGCCTACCCTGAAACGCCC
AGGACCCCCTTCCGCCGCCGGCGCTCGCCCCAGCAAGACCAAATCCAAGG
CGGAAAGCTCTACCCCCACAAAGTCTAAGGCAACTTCGAGGATGGCACCG
CCTACCCTGAAACGCCCAGGACCCCCTTCCGCCGCCGGCGCTCGCCCCAG
CAAGACCAAATCCAAGGCGGAAAGCTCTACCCCCACAAAGTCTAAGGAAA
CCCCTTCTCCGGCCGCGAGTAGGCCTCAGTCGTGGGATATGGGGTTCGGG
GACGTAGATGACGACTACGACCCGGCTCGCCCCAACGACTACATGGAATA
CTGCCGAGAGAGGATCGACAAGAAGAAGCAGGAGGAGCGGGATAGGGAGC
TCAAGATTATCATGGAGGAGCAGGAGCGAGAGGAAACCCCTTCTCCGGCC
GCGAGTAGGCCTCAGTCGTGGGATATGGGGTTCGGGGACGTAGATGACGA
CTACGACCCGGCTCGCCCCAACGACTACATGGAATACTGCCGAGAGAGGA
TCGACAAGAAGAAGCAGGAGGAGCGGGATAGGGAGCTCAAGATTATCATG
GAGGAGCAGGAGCGAGAGCGGAAACGCCAAGACGAGGAGCGAGCAGCCAC
GATCAAGAAGATCCAAGAAGCGGCCGCTAAGTCGCACGAGGTGGGAGGGG
GGGGTCCAGGGGCGGCAGGGGGGGGCGTTGGGATCGGAGGCGGAGGAATC
GGCGCACCAGCGATGGCAGGCGTGGGTAGAGGGCGCGGTGGTGGCGGTGG
TCCCGGGCACGATGTGGCGGCCATGGACGCGAGTATGGGACGCGGGCGAG
GTCGCGGGCTTTCCAACCTTCCGGCGTGGGTTACCAAGGGGAAGGGGGGC
ACGCCGGGTTCTCCGGAGATGCGGCGGAAACGCCAAGACGAGGAGCGAGC
AGCCACGATCAAGAAGATCCAAGAAGCGGCCGCTAAGTCGCACGAGGTGG
GAGGGGGGGGTCCAGGGGCGGCAGGGGGGGGCGTTGGGATCGGAGGCGGA
GGAATCGGCGCACCAGCGATGGCAGGCGTGGGTAGAGGGCGCGGTGGTGG
CGGTGGTCCCGGGCACGATGTGGCGGCCATGGACGCGAGTATGGGACGCG
GGCGAGGTCGCGGGCTTTCCAACCTTCCGGCGTGGGTTACCAAGGGGAAG
GGGGGCACGCCGGGTTCTCCGGAGATGCGGGAACCCCCTACTCCTGCAAG
GCGTCCCCCTCCTGTCCCCGGTCAGTTGGATGCTGTTCCTGAGGCCGGCC
AACGAGGTGGAAGATTCGGCCCCCAGGCTAAGGCTGGTGGTGCTGGTGTC
GGGGGCGGGTCTGCGGCAGAGAGCGGGATGAACTTTGCCGAGCGCATGAT
GGCCAAGATGGGTCACAAAGAGGGACAAGGAACCCCCTACTCCTGCAAGG
CGTCCCCCTCCTGTCCCCGGTCAGTTGGATGCTGTTCCTGAGGCCGGCCA
ACGAGGTGGAAGATTCGGCCCCCAGGCTAAGGCTGGTGGTGCTGGTGTCG
GGGGCGGGTCTGCGGCAGAGAGCGGGATGAACTTTGCCGAGCGCATGATG
GCCAAGATGGGTCACAAAGAGGGACAAGGCTTGGGAGCCTCGAGGCAGGG
TATAAGCCAGCCGCTGCAGTCCATGTCGGCCGGAGGCGGGATGGGGGTGA
TCGACATGCACCATTCCGACAAGAAGAGGCTTGGGAGCCTCGAGGCAGGG
TATAAGCCAGCCGCTGCAGTCCATGTCGGCCGGAGGCGGGATGGGGGTGA
TCGACATGCACCATTCCGACAAGAAGAGAATGGGAGGCCCGTCGGATACA
CCGGCGCCCCCAGCACGGAAAAAGCGGGGACTGTTCTCGAATCCCACAAG
AGTCTTGCTCCTCAAGAATGGGAGGCCCGTCGGATACACCGGCGCCCCCA
GCACGGAAAAAGCGGGGACTGTTCTCGAATCCCACAAGAGTCTTGCTCCT
CAAGAATATGGTGGGGCCGGGGGAGGTGGATGACGAGCTTGAAGGGGAGA
CTTCCGGGGAGTGCGAGCGATTCGGGCCCGTCCGTCGATGTCTCATCTAC
GAGATCAAGAATATGGTGGGGCCGGGGGAGGTGGATGACGAGCTTGAAGG
GGAGACTTCCGGGGAGTGCGAGCGATTCGGGCCCGTCCGTCGATGTCTCA
TCTACGAGATCAAG