mRNA_E-siliculosus-1a_F_contig1525.3040.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A6H5KVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT8_9PHAE) HSP 1 Score: 243 bits (621), Expect = 5.520e-78 Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 1
Query: 1 PNVAAGRTVTPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
PNVA GRTV P+VVPVELVTVGEL+GVPRSTRGRLTIEQVNAAV DIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGR FIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV
Sbjct: 230 PNVATGRTVMPKVVPVELVTVGELNGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 363
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: D8LPM8_ECTSI (Similar to C18orf24 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM8_ECTSI) HSP 1 Score: 232 bits (591), Expect = 9.800e-77 Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 1
Query: 31 PEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
PEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAV DIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGR FIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV
Sbjct: 2 PEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVTDIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRPFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 125
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A835YPY4_9STRA (C18orf24 protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 5.890e-24 Identity = 48/120 (40.00%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 46 VELVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFK-KGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
++LVT EL +P++TRGRL ++ VNAA+ ++Q + ++ L++P+ K++EK R R E+ E P H G F+ E ++R+ + KGE TA+ ++ +LR+LKR + +R G+MTYVV
Sbjct: 4 IQLVTSAELQALPKTTRGRLQLDHVNAAITELQAVLTTKYTLLARPKSKLNEKLRRRYEQYAAAEAPEHEGAHFLTESEMRSCAALGGKGEATARLMLNSLRSLKRFRPLRANGVMTYVV 123
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A7K6LCH4_9CORV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Falcunculus frontatus TaxID=254539 RepID=A0A7K6LCH4_9CORV) HSP 1 Score: 73.6 bits (179), Expect = 6.070e-14 Identity = 38/117 (32.48%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 52 LVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
L+T+ E + VP +GRLT +Q+NA V ++ KA+ ++ + +P K MS R ++ + QE A G FI E D++A K + ++++ LR+ +R++ +RG+G++ YV+
Sbjct: 31 LITMEEFESVPAYMKGRLTYDQINAVVQEMNKAVAAKYKIMYQPLKNMSIPDRNLYDKFMEQETNATRGLFFIVEADIKAFTQLK-ADKRFHSILSILRHCQRVREIRGSGLVRYVI 146
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A852JT92_SPIPA (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Spizella passerina TaxID=40210 RepID=A0A852JT92_SPIPA) HSP 1 Score: 74.3 bits (181), Expect = 2.160e-13 Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 46 VELVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
V +TV E + VP +GR+T +Q+NA V +I KA+E ++ L +P K MS R + +E G FI E D++A K + ++++ LR+L+R++ +RG+G++ YV+
Sbjct: 137 VPFITVEEFEKVPAYLKGRITYDQINAVVQEINKAVEGKYKILYQPLKSMSAPVRNLYHRFIEEETKDTKGSFFIVEEDIKAFTQLKL-DKRFHSIVSILRHLQRVREIRGSGLIRYVI 254
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A7L4CMA9_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Nyctiprogne leucopyga TaxID=382315 RepID=A0A7L4CMA9_9AVES) HSP 1 Score: 71.2 bits (173), Expect = 2.910e-12 Identity = 42/128 (32.81%), Postives = 69/128 (53.91%), Query Frame = 1
Query: 28 TPEVVPVE---LVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
T E +P++ L+T E + VP +GRLT EQ+NA V DI KA+ ++ L +P K M+ R L +E G FI E DL+ K + +++ LR+ +R++ VRG+ ++ Y++
Sbjct: 124 TKEPIPIKEISLITAEEFESVPTYMKGRLTYEQINAVVKDINKAVVGKYKILHQPLKSMNAAVRNLYHRFLEEETKETKGEFFIVEADLKQFTELKV-DKRFHGILSILRHCRRMREVRGSRLVRYII 250
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A852N8Z8_9PASS (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Pteruthius melanotis TaxID=357074 RepID=A0A852N8Z8_9PASS) HSP 1 Score: 68.6 bits (166), Expect = 5.210e-12 Identity = 38/117 (32.48%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 52 LVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
L+T E VP +GR+T +Q+NA V +I KA+ ++ L +P K +S + R + L +E G+ FI E DL+A K + ++++ LR+ +R++ VR +G++ YV+
Sbjct: 31 LITTEEFGSVPAYMKGRITCDQINAVVQEINKAVVAKYKILHQPLKSVSVQVRNLYDRFLEEETKDTRGQFFIVEADLKAFTQLKL-DKRFHSILSILRHCQRVREVRSSGLIRYVI 146
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A3B4BVP7_PYGNA (Spindle and kinetochore-associated protein 1 n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4BVP7_PYGNA) HSP 1 Score: 70.5 bits (171), Expect = 5.970e-12 Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 46 VELVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
+E +TV E D +P+ +GR+T +Q+NAAV I A+ ++ L +P K ++ R + QE G+ F+ E DLR L K + A ++ LR+ +RLK +RG G++ YV+
Sbjct: 138 MEFITVQEFDSIPQYMKGRVTYDQLNAAVKSINVAVTGKYKILHQPVKSLTNASRKLHQRFKDQETKDTKGQFFVVEEDLRDLAQLKVDKRFA-GMLNMLRHCQRLKELRGGGLIRYVL 255
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A7L0L6I0_9SYLV (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Sylvietta virens TaxID=208069 RepID=A0A7L0L6I0_9SYLV) HSP 1 Score: 68.2 bits (165), Expect = 7.330e-12 Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 52 LVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
L+T E + VPR +GR+T +Q+NA V + KA+ ++ + +P K MS R + +E G FI E D++ K + ++++ LR+L+R++ VRG+G++ YV+
Sbjct: 31 LITTEEYESVPRYLKGRITYDQINAVVQQMNKAVVDKYKIVYQPLKSMSASVRNLYRRFVEEETKNTKGVFFIVEADIKEFTELKM-DKRFHSILSILRHLRRVREVRGSGLIRYVI 146
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Match: A0A7K7L7P6_9AVES (Spindle and kinetochore-associated protein 1 (Fragment) n=1 Tax=Asarcornis scutulata TaxID=75869 RepID=A0A7K7L7P6_9AVES) HSP 1 Score: 68.9 bits (167), Expect = 7.640e-12 Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 52 LVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAIERRHAFLSKPRKKMSEKQRGRLEELLGQEVPAHGGRSFIAEPDLRALPSFKKGEMTAKALIATLRNLKRLKGVRGAGMMTYVV 402
L+T E + VP +GRLT +Q+NA V D+ KA+ ++ L +P K M+ R LG+E G F+ E D++ K + + ++ LR+ +R++ VRGA ++ YV+
Sbjct: 67 LITTEEFESVPAYMKGRLTYDQINAVVQDLNKAVVGKYKILHQPLKSMNASVRNLYHRFLGEETKDTKGEFFVVEADIKEFTQLKVDKRFHR-ILNILRHCQRVREVRGARLVRYVI 182 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1525.3040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1525.3040.1 >prot_E-siliculosus-1a_F_contig1525.3040.1 ID=prot_E-siliculosus-1a_F_contig1525.3040.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3040.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=135bp PNVAAGRTVTPEVVPVELVTVGELDGVPRSTRGRLTIEQVNAAVADIQKAback to top mRNA from alignment at E-siliculosus-1a_F_contig1525:12849..14106+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1525.3040.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3040.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3040.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:12849..14106+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1525:12849..14106+ >mRNA_E-siliculosus-1a_F_contig1525.3040.1 ID=mRNA_E-siliculosus-1a_F_contig1525.3040.1|Name=mRNA_E-siliculosus-1a_F_contig1525.3040.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1525:12849..14106+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |