mRNA_E-siliculosus-1a_F_contig1517.3002.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1517.3002.1
Unique NamemRNA_E-siliculosus-1a_F_contig1517.3002.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3002.1 vs. uniprot
Match: A0A6H5L8F4_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8F4_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.680e-65
Identity = 111/123 (90.24%), Postives = 114/123 (92.68%), Query Frame = 3 
Query:    6 MEGTGGSKGCRCDVDHSVTRLNGLFDMVDGDTCDVTFVVTSVASAPSSSEGLIPQPAGTPERARPRTETLEQGSHRGDNCSGKNVSGAGIADSDTAGSCENRERHRGEGQEAWAGGGGGATGG 374
            MEGTGGSKGCRCDVDHSV RLNGLF+MVD DTCDVTFVVTSVASA SSSEGL+PQPAGTPERARPRTETLEQGSHRGDNCS KNVSGAGIAD+  AGSCENRER RGEGQEAW GGG GATGG
Sbjct:    1 MEGTGGSKGCRCDVDHSVARLNGLFEMVDDDTCDVTFVVTSVASAQSSSEGLLPQPAGTPERARPRTETLEQGSHRGDNCSDKNVSGAGIADNYRAGSCENRERQRGEGQEAWDGGGRGATGG 123
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3002.1 vs. uniprot
Match: D7FPG9_ECTSI (BTB (POZ) domain containing 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPG9_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.140e-50
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 3 
Query:   84 MVDGDTCDVTFVVTSVASAPSSSEGLIPQPAGTPERARPRTETLEQGSHRGDNCSGKNVSGAGIADSDTAGSCENRERHRGEGQEAWAGGGGGAT 368
            MVDGDTCDVTFVVTSVASAPSSSEGLIPQPAGTPERARPRTETLEQGSHRGDNCSGKNVSGAGIADSDTAGSCENRERHRGEGQEA AGG GG T
Sbjct:    1 MVDGDTCDVTFVVTSVASAPSSSEGLIPQPAGTPERARPRTETLEQGSHRGDNCSGKNVSGAGIADSDTAGSCENRERHRGEGQEALAGGAGGXT 95
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1517.3002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8F4_9PHAE1.680e-6590.24BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FPG9_ECTSI5.140e-5096.84BTB (POZ) domain containing 9 n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1517contigE-siliculosus-1a_F_contig1517:30608..30981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size369
Model size375
Exons1
Ec32 orthologEc-14_004900.2
Ec32 ortholog descriptionBTB/POZ-like
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG4350@1,KOG4350@2759
EggNOG free text desc.circadian sleep/wake cycle, non-REM sleep
KEGG koko:K10480
Seed eggNOG ortholog2880.D7FPG9
Seed ortholog evalue4.8e-42
Seed ortholog score177.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928028.3510518-UTR-E-siliculosus-1a_F_contig1517:30607..306121622928028.3510518-UTR-E-siliculosus-1a_F_contig1517:30607..30612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1517 30608..30612 +
1696318778.424216-UTR-E-siliculosus-1a_F_contig1517:30607..306121696318778.424216-UTR-E-siliculosus-1a_F_contig1517:30607..30612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1517 30608..30612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928028.3701065-CDS-E-siliculosus-1a_F_contig1517:30612..309811622928028.3701065-CDS-E-siliculosus-1a_F_contig1517:30612..30981Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1517 30613..30981 +
1696318778.4342263-CDS-E-siliculosus-1a_F_contig1517:30612..309811696318778.4342263-CDS-E-siliculosus-1a_F_contig1517:30612..30981Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1517 30613..30981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1517.3002.1prot_E-siliculosus-1a_F_contig1517.3002.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1517 30613..30981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1517.3002.1

>prot_E-siliculosus-1a_F_contig1517.3002.1 ID=prot_E-siliculosus-1a_F_contig1517.3002.1|Name=mRNA_E-siliculosus-1a_F_contig1517.3002.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=123bp
MEGTGGSKGCRCDVDHSVTRLNGLFDMVDGDTCDVTFVVTSVASAPSSSE
GLIPQPAGTPERARPRTETLEQGSHRGDNCSGKNVSGAGIADSDTAGSCE
NRERHRGEGQEAWAGGGGGATGG
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1517:30608..30981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1517.3002.1 ID=mRNA_E-siliculosus-1a_F_contig1517.3002.1|Name=mRNA_E-siliculosus-1a_F_contig1517.3002.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1517:30608..30981+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGACATGGAGGGGACAGGCGGGAGTAAGGGCTGCCGCTGCGATGTGGAC
CATTCCGTCACGAGGCTGAACGGCTTGTTTGATATGGTGGATGGTGATAC
GTGCGACGTAACGTTTGTCGTGACGTCCGTGGCGTCGGCTCCGTCCAGCT
CTGAAGGACTTATTCCACAACCGGCGGGTACACCAGAGCGGGCAAGACCA
AGGACTGAAACGCTAGAACAAGGCTCGCATAGAGGCGACAACTGTAGTGG
CAAGAATGTCTCGGGTGCTGGAATCGCCGATAGTGACACAGCTGGGAGCT
GTGAAAATAGGGAGAGGCACCGGGGCGAGGGCCAAGAGGCCTGGGCCGGA
GGAGGAGGGGGGGCAACAGGCGGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1517:30608..30981+

>mRNA_E-siliculosus-1a_F_contig1517.3002.1 ID=mRNA_E-siliculosus-1a_F_contig1517.3002.1|Name=mRNA_E-siliculosus-1a_F_contig1517.3002.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1517:30608..30981+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGGGGACAGGCGGGAGTAAGGGCTGCCGCTGCGATGTGGACCATTC
CGTCACGAGGCTGAACGGCTTGTTTGATATGGTGGATGGTGATACGTGCG
ACGTAACGTTTGTCGTGACGTCCGTGGCGTCGGCTCCGTCCAGCTCTGAA
GGACTTATTCCACAACCGGCGGGTACACCAGAGCGGGCAAGACCAAGGAC
TGAAACGCTAGAACAAGGCTCGCATAGAGGCGACAACTGTAGTGGCAAGA
ATGTCTCGGGTGCTGGAATCGCCGATAGTGACACAGCTGGGAGCTGTGAA
AATAGGGAGAGGCACCGGGGCGAGGGCCAAGAGGCCTGGGCCGGAGGAGG
AGGGGGGGCAACAGGCGGAATGGAGGGGACAGGCGGGAGTAAGGGCTGCC
GCTGCGATGTGGACCATTCCGTCACGAGGCTGAACGGCTTGTTTGATATG
GTGGATGGTGATACGTGCGACGTAACGTTTGTCGTGACGTCCGTGGCGTC
GGCTCCGTCCAGCTCTGAAGGACTTATTCCACAACCGGCGGGTACACCAG
AGCGGGCAAGACCAAGGACTGAAACGCTAGAACAAGGCTCGCATAGAGGC
GACAACTGTAGTGGCAAGAATGTCTCGGGTGCTGGAATCGCCGATAGTGA
CACAGCTGGGAGCTGTGAAAATAGGGAGAGGCACCGGGGCGAGGGCCAAG
AGGCCTGGGCCGGAGGAGGAGGGGGGGCAACAGGCGGA
back to top