mRNA_E-siliculosus-1a_F_contig1508.2959.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1508.2959.1
Unique NamemRNA_E-siliculosus-1a_F_contig1508.2959.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1508.2959.1 vs. uniprot
Match: D7FKB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB9_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 7.780e-101
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 2 
Query:   29 MPRTDSADGQGQGDGSTPTAVVAAGCDAGGVEADWEKLEKSEQDVIVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISPSDGTIAPATQSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVHQHWNTY 520
            M RTDSADGQGQGDGSTPTAVVAAGCDAGGVEADWEKLE++EQD IVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTIS SDGTI  AT SKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDV QHWNT+
Sbjct:    1 MQRTDSADGQGQGDGSTPTAVVAAGCDAGGVEADWEKLEQTEQDFIVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISFSDGTIDAATHSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVRQHWNTF 164
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BLAST of mRNA_E-siliculosus-1a_F_contig1508.2959.1 vs. uniprot
Match: D8LHA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 5.190e-20
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = 2 
Query:  119 VEADWEKLEKSEQDVIVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISPSDGTIAPATQSKLES-LLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDLISAPLDVHQHWNTY 520
            V + W  L  S+ +  VP +LFV+CKTVVEDD G L+LN T+VQRV ++    + P D         +LE  LLF + +KGP  GG I  R   ++D R  S        TV +C +TLDL +APLDV QHWN +
Sbjct:   19 VASKWATLRGSQLEAKVPVALFVLCKTVVEDDQGALYLNATVVQRVPLETTRPMPPQD---------QLEKDLLFEMKVKGPSAGGGITSRRRSVEDVRGRSQP------TVMVC-ETLDLKTAPLDVRQHWNWF 137
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1508.2959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKB9_ECTSI7.780e-10193.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHA7_ECTSI5.190e-2043.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1508contigE-siliculosus-1a_F_contig1508:18579..23759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size525
Model size671
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1508.2959.1prot_E-siliculosus-1a_F_contig1508.2959.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1508 18607..23641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928019.900839-UTR-E-siliculosus-1a_F_contig1508:18578..186061622928019.900839-UTR-E-siliculosus-1a_F_contig1508:18578..18606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1508 18579..18606 +
1696318774.777795-UTR-E-siliculosus-1a_F_contig1508:18578..186061696318774.777795-UTR-E-siliculosus-1a_F_contig1508:18578..18606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1508 18579..18606 +
1622928019.948834-UTR-E-siliculosus-1a_F_contig1508:23641..237591622928019.948834-UTR-E-siliculosus-1a_F_contig1508:23641..23759Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1508 23642..23759 +
1696318774.8131382-UTR-E-siliculosus-1a_F_contig1508:23641..237591696318774.8131382-UTR-E-siliculosus-1a_F_contig1508:23641..23759Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1508 23642..23759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928019.9145553-CDS-E-siliculosus-1a_F_contig1508:18606..187361622928019.9145553-CDS-E-siliculosus-1a_F_contig1508:18606..18736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1508 18607..18736 +
1696318774.7898934-CDS-E-siliculosus-1a_F_contig1508:18606..187361696318774.7898934-CDS-E-siliculosus-1a_F_contig1508:18606..18736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1508 18607..18736 +
1622928019.9328866-CDS-E-siliculosus-1a_F_contig1508:23246..236411622928019.9328866-CDS-E-siliculosus-1a_F_contig1508:23246..23641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1508 23247..23641 +
1696318774.8045785-CDS-E-siliculosus-1a_F_contig1508:23246..236411696318774.8045785-CDS-E-siliculosus-1a_F_contig1508:23246..23641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1508 23247..23641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1508.2959.1

>prot_E-siliculosus-1a_F_contig1508.2959.1 ID=prot_E-siliculosus-1a_F_contig1508.2959.1|Name=mRNA_E-siliculosus-1a_F_contig1508.2959.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
MPRTDSADGQGQGDGSTPTAVVAAGCDAGGVEADWEKLEKSEQDVIVPAS
LFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISPSDGTIAPATQSKLE
SLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEAPGTVQLCAQTLDL
ISAPLDVHQHWNTYVRISCDRYIP*
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mRNA from alignment at E-siliculosus-1a_F_contig1508:18579..23759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1508.2959.1 ID=mRNA_E-siliculosus-1a_F_contig1508.2959.1|Name=mRNA_E-siliculosus-1a_F_contig1508.2959.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5181bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1508:18579..23759+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGAGATACTGAGTGTAGCGACCACAGAATGCCGCGCACGGATTCTGCCG
ATGGTCAGGGGCAAGGAGATGGTTCGACGCCGACTGCTGTAGTAGCGGCA
GGGTGTGATGCCGGCGGTGTGGAGGCTGACTGGGAGAAACTGGAAAAAAG
TGAACAAGGTGGGCAAGTTGAGGTAGAGGCACTGCTCATGTGTGATTCTT
TTCCGAGCGTCAGGAAAAAAAAGCAGCTCGGAGGTGAAATGCCTGCTGGC
GTTTGTTTGCGTTGTTGAGCAATTTTTGGGTCTGCCGTATTGCGAGTGTG
TACGTAGGGTATATACTACCGCCGTTTCCATCTGCGTGTACTCTGCTGTA
GACGCATGGGCCAAACCAGCAGCAGTTTCGCGCGGTTTCGGCAACGCGGT
GGCAGCGTTTCACGCAAGAGACGGCAGCTTGGAGCAGCTTGCAGCAGTGT
GTAGCAATCACCCTCGTTCGGTCTAAGAATAGCACTCCACCAGACAGACG
AAGAAGACCACTCGGCCTCGGTGCTTGTATGCACGTATTGTGCCGCCCCT
GTTCTTTCACGCCGTTTGTTTGCTGGGCAACCTTCGCCGTTTTTGCTGGA
CAGCTGCAGCAAAGCACTGAAGGTGCGGCGAGATTACTTCGTCTTCTTCC
CCGAAAAGAAGTTCCGGCTGATCTCATTGCTATTGTTATTGTTGTTGTTG
TCTTCACATTAAACTCGTGTCAGTTGCTAATCCCAAAATCTAGCAAAGAC
GCGGTCCGCGGTCACAACAATGCTAGAGCCATCAAAAGATCTAAAGAACA
CGCAAACTAGCAAGAAAAGGGTACACAATCCCGAAGAGGTACACCTACAT
CCCTGCAGCGTGCCCAAAACTGAACTACACGGCCACACACGGCATTCGAC
TACAGCAGCGTCATCCCCCCTGTCCCACACTTTACCGCAATGAATGTCTT
GTCGACTACAGCGTATACAGCTGTCTGGAGTGCTGCCTGTACAATAACAC
CATGCATGGTAGGCATGGCACAAGTTCGGGGCGCGCAACTGCTGTCTGAA
GTGCTGTCAGAATGCGTCCGTGGACGTACAGTGAAAAAGAACACCCAACC
AAAGCCATCATTGCAATTGACAATCACCGAATCTACCCCCGATCATCTAT
GTTGGACACAGCAGTGATAATAATCGACACTGACTAGGAATCGTTCCACA
TTGAAGGGGTCTGTCTTCCACGATGCAGGTACACAATTAAGGCACCCGGG
GTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCATT
GCACATACCCAACACCGATGTTCAGGGAAAAAAACGGAAAATGTTTGACA
ACACAAAATGTTCGTCCGTGCGTCACGGTTCGATGTCGTCCGTGTGCTCC
GGTGCCGCTGCTCCGGTGCCGCTGCTCCGGTGTCGCTGCGGCCAGTCCTA
GCACGACCAACCTCGACCCGCTCCGTCCGTACACGCTCTCGTTGCCGTCC
TTCCCTGTCGGTTCCTCGCTTTCTCCCCCGCTTCACTTAGACTAGGCTTC
TTGGTCTAAAAATTCTCGCGTCGAAGGGTCAACTAGCCCACTCAGCTCGT
CACCACCTGTTCCCTCCTTCCCTTTGATGGCGAAGCCAGGTTACTGAGAC
AGTACAGCTCCCTCTAGCAAACCTGGGCCGTGTACATACAATAGTGTCCG
TCCACCTTTCTGATGGCGTCTGCCTCCGCGCACAAAACTGAGATGGACGT
TGCTGTCTACACCGACGGACATGAGGCCCGCGCATCTGCATTTTGTACCT
GACGCACCAGTGCCGACCCAACTCTACCACTACGCACGCCTCGCGGCGGG
TGCGCCGCAGCAAGAAGGTATCGGTTCCTTGAGGGTGAGTCTAGCCATGC
TCGCTAGAAAGACCCCCCCCCTCGCTATGGGCCATGCCTAAGCAAAAGCC
TTGCCGAGGCAGCGAGGGGAAGAAGGAAGTTATTAGGAAACATAATTTTC
TTATTGCCGGTGCAGTGAGGGGGGCCAAAATACCCGATATAAGGCGGTCG
AAATTTGCGCCCACAGCTCAGACCCGGTAAAGGCGGCCACCGCCTTGGGT
CATACCGGGTCTGGCCCTGCATAAGGCGGTATCTACCTATCTCAAACCCG
ATGCAAGGCGGTGATCATCTTCGCATGAGTACAACCCTCTGGGAGCATCT
GAGCGAGTGCACATAAAACGCCCGGATCTATACACAACAATTATCACGTG
GCACATATAAACCCGTGTGGCACTCGGACATGATAATATTAGATAATATT
CTCGTAGATGGATGTAGAAATTTCAAGGATCCTCTTGGTAACAATTTTCT
CAGTGTAGTGATTGGTACGGGAACCAGCGACCACCGTAATTCGCGTATTT
TCTGGATGGTAACTGGCCATCGCGTGCGGTAGTTTGCTTACGCAAACAAC
GACCGCGGTAATGCACGGTAATGCTGAGGTGGTAACTGGTCACCAAGGAA
TTCCCTTACGGGGACCAGCAGCCACCACGGTAGTGAACCGTAATATTTGG
GTGGTACAGTAACTGGCCACCACGCAATGCAAGGTATCGTTGGATGGTAA
AACCCCCCGGCGATGCACAGTAATTGTGTTGGATGGGATAGGGAGAAGGC
GTTTACTTGATAATGGTTTGGGCGGATATGGTAACTGCGAATTATCACGG
TAAAACATTACCAACTACTATTCCCGTGTATTGTTCGGTACACAATAGAT
TTTCAATTATTGCTTGGTGGGTCCATGTTGGCTATTTTGTTTTGCTCTTC
ACTAAGGTAACAGAGTCGTTGTTCCTCGCATCGGCACATCGGCACCCAAG
AGCATGTACGAGGGCTTGTGTGCTGGCATCGGATGTACATGCCGATTCTG
AAAATATTACGTTCGTTCGCTTACTTGTTGCGAGGCATCAGGCTCGACAT
ACATGTATGTGGTGCATGTAACGATGCTCTTCCACTCAACAATGCGCCGT
GAGGTGATAACCGCTATCAACCTTTGTATTTTGCCCTGAATAAGGCGGTT
TAAAACTTCATTCAAGAGGAAGGCGGCTGCCCGACATATGGCGGTTATAT
TCACCACGCACACCAGCGCCTTGTATCGGGCCCCCTACAAGTATTGTGTA
TACTTTACGCCCAGACCAAGAGGTAGAGCGGAAAGATCAACAGGACTCTG
GGAGGAAGTGTGGCGGGTCCTACAACCGCTTTGTAGCATAACCAGACTAG
GGAGTTGGAGTTGAGTGTGCGTCTCAACAGCGAATAGCCTGGTTGAGGCT
GCGCTGATTTGCAGTTGTGTCGGGATGGGGAGATGAGCTACGGCCCGTGA
GCCCCTTGAGAGCCGCGCGGGCCGGGAACACCCGGAACACCCTACAGCAG
TATTGCATACGGTGAGAGGGGCCAAGGGTACCCGCGGAAAGAATCCTCAA
CACACGAAAGCCCATAAATCGAAAATCTAGGTTCGTGCGGAGGGGGGGGG
GGGCATTTGTTCAGAGATCCCTGGGTTTTATGCGGAGGCAGTTTGGCTGA
GGCGGGGACGTGAACCCGAATCCCGTAGTTGTATGATGAGGAAATTTCGC
CCGAGCCTTGCTGAGGAGGCTCCTGCCTCTTCTGTGAGTATGTGACTGTC
GTATGGGCTTAGAGACCCCCCGAGAGGTGGTGGGCATCTCTCCACACCCC
TAGGCTTCTCTTCGGAACCTTTTCTTGCATGCCCCGAATATCCTTCGGGA
GCGCCCTTAGTTGTCAATAGCACTACAATCTGTGGGTGAACGCCTGCATG
CACTCTCTTGATCGTGCCTACATATGCCTACATACGACCTCTTGGTCGCG
GGTATCGTAGAACTGCTGTGCGATGTAGTGTCGAAGCCACAGAACCCGAA
CGTCCGAAGGTCACAAACGCTCATCAAATGGCGCTCTCGTGTCTTGCCAG
GGATTCATGGCAACTTTTCGAAATTCTCTCAACGCCCCGGGGGGGCTTCA
GTATTCGAAATTTTCGTTCGTGAGCCCCGTTGGAAGGGCGCAAAACCACA
GACAACGGGGGACGCATCTTACTGCGCTTTTACATTGTTGCGGCGGTGGT
GGCGGCTTGCTGCTGCTGTGGCTAGTTGTCGCGCGCTGCTATTGATCAGC
ATAGACTACGTGGAGGAAGTAATATTTGCTCAAGTGTTGGCTGTGGAGCT
CGTTTTGTGGTGTGCGAATTTTAAGACTCCGTCTTGGTGTGTGGCAACAT
GGTGAGAGCGTGACAACGGCAGTCATGCAATTTTCACATCTTACCTCGAG
TAGACCGCTTTTGGGAACCCTGGGTTGTGCGGTTCGCCCAACTCTGGGTT
TGATTGGACCATTTTTCATTTATTTCAAATGTTAGTCCGCTGTTCTGACC
CAAGCTTGCTGGAACTTCAGCTACAATAAAAACGAAGCGGTCCTCATTTC
ACCAATCGTTAGGGCGTGGGTAAACTCTGAGTGCATTGACAAATCGGTTT
AAATGTTATGTCAACTTTCCTTGCGAAGGTACAATAATAGCTGCTTGCTG
CCGCCTTGTGGAGAGGGCAATGTACAGCCCGTCTTGCCCCCCCCCCCCTC
TTTTTGGTAGATACACACGCCATCCACTGTTCCCCGAAGATGTTGAACCT
TTTCTTTTTTTTTTTCAGATGTTATCGTCCCGGCCTCCCTGTTCGTCATG
TGCAAGACCGTGGTGGAGGACGACGGCGGCGGACTATTCCTGAACGGGAC
TCTGGTCCAAAGAGTGTTGGTGAAAAACGTTCCGACTATTTCCCCCTCAG
ACGGCACCATTGCCCCTGCGACCCAGTCGAAGCTGGAATCGTTGTTGTTC
CCGATCCACCTCAAGGGCCCACTCCCCGGCGGGGACATCAAGCATAGGAC
GCTTTACATTGATGACCCCCGTGAGCCCAGCGATCAAGAGGCCGAAGCGC
CAGGGACAGTTCAGTTATGCGCACAAACACTGGACCTCATCAGTGCTCCA
CTCGACGTCCATCAACACTGGAACACGTATGTTCGAATTTCGTGTGATAG
ATATATCCCCTAGACTATTTAATCCGTGCCCTAACCCTTAGAACAAACCA
GCCTTGTACGTCGGTAGATGCTGTGTAGGTTGGCCCACACTTGATTCTGT
AGGGTAGGCTGGTGTGCGTGGTGAAAATCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1508:18579..23759+

>mRNA_E-siliculosus-1a_F_contig1508.2959.1 ID=mRNA_E-siliculosus-1a_F_contig1508.2959.1|Name=mRNA_E-siliculosus-1a_F_contig1508.2959.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1508:18579..23759+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCGCACGGATTCTGCCGATGGTCAGGGGCAAGGAGATGGTTCGAC
GCCGACTGCTGTAGTAGCGGCAGGGTGTGATGCCGGCGGTGTGGAGGCTG
ACTGGGAGAAACTGGAAAAAAGTGAACAAGATGCCGCGCACGGATTCTGC
CGATGGTCAGGGGCAAGGAGATGGTTCGACGCCGACTGCTGTAGTAGCGG
CAGGGTGTGATGCCGGCGGTGTGGAGGCTGACTGGGAGAAACTGGAAAAA
AGTGAACAAGATGTTATCGTCCCGGCCTCCCTGTTCGTCATGTGCAAGAC
CGTGGTGGAGGACGACGGCGGCGGACTATTCCTGAACGGGACTCTGGTCC
AAAGAGTGTTGGTGAAAAACGTTCCGACTATTTCCCCCTCAGACGGCACC
ATTGCCCCTGCGACCCAGTCGAAGCTGGAATCGTTGTTGTTCCCGATCCA
CCTCAAGGGCCCACTCCCCGGCGGGGACATCAAGCATAGGACGCTTTACA
TTGATGACCCCCGTGAGCCCAGCGATCAAGAGGCCGAAGCGCCAGGGACA
GTTCAGTTATGCGCACAAACACTGGACCTCATCAGTGCTCCACTCGACGT
CCATCAACACTGGAACACGTATGTTCGAATTTCGTGTGATAGATATATCC
CCTAGATGTTATCGTCCCGGCCTCCCTGTTCGTCATGTGCAAGACCGTGG
TGGAGGACGACGGCGGCGGACTATTCCTGAACGGGACTCTGGTCCAAAGA
GTGTTGGTGAAAAACGTTCCGACTATTTCCCCCTCAGACGGCACCATTGC
CCCTGCGACCCAGTCGAAGCTGGAATCGTTGTTGTTCCCGATCCACCTCA
AGGGCCCACTCCCCGGCGGGGACATCAAGCATAGGACGCTTTACATTGAT
GACCCCCGTGAGCCCAGCGATCAAGAGGCCGAAGCGCCAGGGACAGTTCA
GTTATGCGCACAAACACTGGACCTCATCAGTGCTCCACTCGACGTCCATC
AACACTGGAACACGTATGTTCGAATTTCGTGTGATAGATATATCCCCTAG
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