mRNA_E-siliculosus-1a_F_contig15024.2928.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15024.2928.1
Unique NamemRNA_E-siliculosus-1a_F_contig15024.2928.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig15024.2928.1 vs. uniprot
Match: Q8QNQ4_ESV1K (EsV-1-5 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNQ4_ESV1K)

HSP 1 Score: 422 bits (1086), Expect = 2.070e-147
Identity = 212/247 (85.83%), Postives = 226/247 (91.50%), Query Frame = 1 
Query:    1 DTSDLYTAMWKLQKREQAYFARRYLQTNKAVLRGWHNQVSKYKFRKEANVGHGVQGIVYHVINHPDKVVKRYNVRRPEALAFLTTKQFVYDRIAFEQGFGPQIFEISSDGRVIDLPDKSTIPKFEKGLIISVVMERIEEIKGKEELLKNSDGIVGVWKKMRQGGLLNVDGFYAHSSKEKAIVAGDFGGVEVTENDQVFIQKMYEYFDSCNSVGKHDAEIALKYEEEHPTDSFTTEILKPALDKTYGR 741
            DTSDLYTAMWKLQK+EQAYFARRYLQTNKAVLRGWHNQVSKYKFRKEA+VGHGVQGIVYHVINHPDKVVKRY+VRRP  LAFLTTKQFVYDRIA EQGFGPQI+EISSDGRVIDL DKSTIPKFEKGLIISVVME+IE++  +EELLKNS GIVGVWKKMRQGGLLNVDGFYAHS K+KAIVAGDFG VE   NDQ+FI KMYE+FDSC S+G +D  IALKYE+EHP DSFT  ILKPALDKTY R
Sbjct:   59 DTSDLYTAMWKLQKKEQAYFARRYLQTNKAVLRGWHNQVSKYKFRKEASVGHGVQGIVYHVINHPDKVVKRYSVRRPGTLAFLTTKQFVYDRIACEQGFGPQIYEISSDGRVIDLSDKSTIPKFEKGLIISVVMEKIEKMTDQEELLKNSGGIVGVWKKMRQGGLLNVDGFYAHSLKQKAIVAGDFGVVEEATNDQMFIDKMYEFFDSCLSIGANDPGIALKYEKEHPEDSFTKLILKPALDKTYRR 305
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15024.2928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNQ4_ESV1K2.070e-14785.83EsV-1-5 n=1 Tax=Ectocarpus siliculosus virus 1 (is... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15024contigE-siliculosus-1a_F_contig15024:267..1019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size729
Model size753
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.1622765-CDS-E-siliculosus-1a_F_contig15024:266..9951622928014.1622765-CDS-E-siliculosus-1a_F_contig15024:266..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15024 267..995 -
1696318772.7138867-CDS-E-siliculosus-1a_F_contig15024:266..9951696318772.7138867-CDS-E-siliculosus-1a_F_contig15024:266..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15024 267..995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.177527-UTR-E-siliculosus-1a_F_contig15024:995..10191622928014.177527-UTR-E-siliculosus-1a_F_contig15024:995..1019Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15024 996..1019 -
1696318772.7214088-UTR-E-siliculosus-1a_F_contig15024:995..10191696318772.7214088-UTR-E-siliculosus-1a_F_contig15024:995..1019Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig15024 996..1019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15024.2928.1prot_E-siliculosus-1a_F_contig15024.2928.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15024 267..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15024.2928.1

>prot_E-siliculosus-1a_F_contig15024.2928.1 ID=prot_E-siliculosus-1a_F_contig15024.2928.1|Name=mRNA_E-siliculosus-1a_F_contig15024.2928.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=243bp
MWKLQKREQAYFARRYLQTNKAVLRGWHNQVSKYKFRKEANVGHGVQGIV
YHVINHPDKVVKRYNVRRPEALAFLTTKQFVYDRIAFEQGFGPQIFEISS
DGRVIDLPDKSTIPKFEKGLIISVVMERIEEIKGKEELLKNSDGIVGVWK
KMRQGGLLNVDGFYAHSSKEKAIVAGDFGGVEVTENDQVFIQKMYEYFDS
CNSVGKHDAEIALKYEEEHPTDSFTTEILKPALDKTYGRHNK*
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mRNA from alignment at E-siliculosus-1a_F_contig15024:267..1019-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15024.2928.1 ID=mRNA_E-siliculosus-1a_F_contig15024.2928.1|Name=mRNA_E-siliculosus-1a_F_contig15024.2928.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=753bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15024:267..1019- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACACCAGCGACCTCTATACAGCGATGTGGAAGCTACAAAAAAGAGAGCA
AGCGTACTTTGCGAGACGCTACTTGCAAACAAACAAAGCCGTGCTTCGGG
GCTGGCACAACCAAGTTTCCAAATATAAATTCCGAAAAGAGGCGAACGTG
GGTCATGGAGTCCAGGGAATTGTGTACCACGTGATTAACCACCCGGACAA
GGTTGTCAAGCGGTACAATGTGCGGAGACCCGAGGCACTTGCTTTTCTCA
CCACAAAACAGTTTGTCTACGACAGGATCGCGTTCGAACAGGGGTTCGGC
CCCCAAATATTCGAGATTTCGTCCGATGGTCGAGTCATTGACCTGCCTGA
CAAAAGCACCATACCCAAATTTGAAAAAGGACTAATAATATCTGTTGTCA
TGGAAAGAATTGAAGAGATAAAGGGTAAAGAAGAACTGTTGAAGAATTCT
GATGGAATTGTTGGTGTGTGGAAAAAAATGAGGCAAGGTGGGTTATTGAA
CGTAGACGGCTTCTATGCACACTCCTCGAAGGAAAAGGCGATAGTTGCCG
GAGATTTTGGTGGGGTAGAAGTAACAGAAAACGACCAGGTGTTCATACAA
AAAATGTACGAGTATTTTGATTCGTGTAACTCCGTTGGTAAACATGACGC
GGAAATTGCGCTCAAGTACGAGGAGGAACACCCGACGGACTCTTTCACGA
CAGAAATTTTGAAACCAGCGTTGGACAAAACTTACGGTCGCCACAACAAA
TAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15024:267..1019-

>mRNA_E-siliculosus-1a_F_contig15024.2928.1 ID=mRNA_E-siliculosus-1a_F_contig15024.2928.1|Name=mRNA_E-siliculosus-1a_F_contig15024.2928.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15024:267..1019- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGAAGCTACAAAAAAGAGAGCAAGCGTACTTTGCGAGACGCTACTT
GCAAACAAACAAAGCCGTGCTTCGGGGCTGGCACAACCAAGTTTCCAAAT
ATAAATTCCGAAAAGAGGCGAACGTGGGTCATGGAGTCCAGGGAATTGTG
TACCACGTGATTAACCACCCGGACAAGGTTGTCAAGCGGTACAATGTGCG
GAGACCCGAGGCACTTGCTTTTCTCACCACAAAACAGTTTGTCTACGACA
GGATCGCGTTCGAACAGGGGTTCGGCCCCCAAATATTCGAGATTTCGTCC
GATGGTCGAGTCATTGACCTGCCTGACAAAAGCACCATACCCAAATTTGA
AAAAGGACTAATAATATCTGTTGTCATGGAAAGAATTGAAGAGATAAAGG
GTAAAGAAGAACTGTTGAAGAATTCTGATGGAATTGTTGGTGTGTGGAAA
AAAATGAGGCAAGGTGGGTTATTGAACGTAGACGGCTTCTATGCACACTC
CTCGAAGGAAAAGGCGATAGTTGCCGGAGATTTTGGTGGGGTAGAAGTAA
CAGAAAACGACCAGGTGTTCATACAAAAAATGTACGAGTATTTTGATTCG
TGTAACTCCGTTGGTAAACATGACGCGGAAATTGCGCTCAAGTACGAGGA
GGAACACCCGACGGACTCTTTCACGACAGAAATTTTGAAACCAGCGTTGG
ACAAAACTTACGGTCGCCACAACAAATAGATGTGGAAGCTACAAAAAAGA
GAGCAAGCGTACTTTGCGAGACGCTACTTGCAAACAAACAAAGCCGTGCT
TCGGGGCTGGCACAACCAAGTTTCCAAATATAAATTCCGAAAAGAGGCGA
ACGTGGGTCATGGAGTCCAGGGAATTGTGTACCACGTGATTAACCACCCG
GACAAGGTTGTCAAGCGGTACAATGTGCGGAGACCCGAGGCACTTGCTTT
TCTCACCACAAAACAGTTTGTCTACGACAGGATCGCGTTCGAACAGGGGT
TCGGCCCCCAAATATTCGAGATTTCGTCCGATGGTCGAGTCATTGACCTG
CCTGACAAAAGCACCATACCCAAATTTGAAAAAGGACTAATAATATCTGT
TGTCATGGAAAGAATTGAAGAGATAAAGGGTAAAGAAGAACTGTTGAAGA
ATTCTGATGGAATTGTTGGTGTGTGGAAAAAAATGAGGCAAGGTGGGTTA
TTGAACGTAGACGGCTTCTATGCACACTCCTCGAAGGAAAAGGCGATAGT
TGCCGGAGATTTTGGTGGGGTAGAAGTAACAGAAAACGACCAGGTGTTCA
TACAAAAAATGTACGAGTATTTTGATTCGTGTAACTCCGTTGGTAAACAT
GACGCGGAAATTGCGCTCAAGTACGAGGAGGAACACCCGACGGACTCTTT
CACGACAGAAATTTTGAAACCAGCGTTGGACAAAACTTACGGTCGCCACA
ACAAATAG
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