mRNA_E-siliculosus-1a_F_contig14981.2890.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig14981.2890.1
Unique Name	mRNA_E-siliculosus-1a_F_contig14981.2890.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A0D5M0D4_9GAMM (TRAP dicarboxylate transporter, DctM subunit n=81 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D5M0D4_9GAMM)

HSP 1 Score: 613 bits (1580), Expect = 4.880e-219
Identity = 332/341 (97.36%), Postives = 340/341 (99.71%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            LSGAVGIV+GLSPDMLAT+GTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVS+RYGWEGGTPV+ AE+LSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGA+VGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWI+SLTDNGV+LLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL
Sbjct:   27 LSGAVGIVLGLSPDMLATMGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSKRYGWEGGTPVESAERLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAIVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIVSLTDNGVLLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 367

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A0F9YBA4_9ZZZZ (DctM domain-containing protein n=42 Tax=root TaxID=1 RepID=A0A0F9YBA4_9ZZZZ)

HSP 1 Score: 612 bits (1578), Expect = 9.850e-219
Identity = 333/341 (97.65%), Postives = 340/341 (99.71%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPA++VS+RYGWEGG PV+GAEQLSVR+TFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGA+VGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGV+LLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL
Sbjct:   27 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPALLVSKRYGWEGGKPVEGAEQLSVRSTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGALVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVLLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 367

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: H0IYH5_9GAMM (TRAP dicarboxylate transporter subunit DctM n=13 Tax=Halomonas TaxID=2745 RepID=H0IYH5_9GAMM)

HSP 1 Score: 607 bits (1564), Expect = 1.330e-216
Identity = 329/341 (96.48%), Postives = 338/341 (99.12%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            LSGAVGI+ GLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAG+ALLVPAMIVS+RYGWEGGTPV+GAE LSVRTTFKQA+PALFAPVLILGGLRSGLFTPTEAAVVAVAYG +VGLFLT+ELSLRDLWELLGEAAIISGVVMLII+LAGIFAWAGTMLGTFRHLAEWIISLTDNGV+LLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL
Sbjct:   27 LSGAVGILAGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGMALLVPAMIVSKRYGWEGGTPVEGAELLSVRTTFKQALPALFAPVLILGGLRSGLFTPTEAAVVAVAYGTLVGLFLTKELSLRDLWELLGEAAIISGVVMLIISLAGIFAWAGTMLGTFRHLAEWIISLTDNGVLLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 367

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A3Q8WFC3_9GAMM (TRAP transporter large permease n=9 Tax=Halomonadaceae TaxID=28256 RepID=A0A3Q8WFC3_9GAMM)

HSP 1 Score: 591 bits (1523), Expect = 2.240e-210
Identity = 321/341 (94.13%), Postives = 333/341 (97.65%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            L+G+VGIV GLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIV++RYGWEG TP  GAE L+VRTTF+QA+PALFAPVLILGGLRSGLFTPTEAAVVAVAYG + GLFLT+ELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWII LTDNGV+LL+LVMLAVLVAGMLLDAISIYLIMMP+LIPVMQHFEWNPVWFGILL
Sbjct:   27 LAGSVGIVAGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVAKRYGWEG-TPAVGAETLTVRTTFRQALPALFAPVLILGGLRSGLFTPTEAAVVAVAYGTIAGLFLTKELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIIGLTDNGVLLLVLVMLAVLVAGMLLDAISIYLIMMPVLIPVMQHFEWNPVWFGILL 366

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A2N7TYL1_9GAMM (C4-dicarboxylate ABC transporter n=1 Tax=Halomonas endophytica TaxID=2033802 RepID=A0A2N7TYL1_9GAMM)

HSP 1 Score: 567 bits (1462), Expect = 4.450e-201
Identity = 307/341 (90.03%), Postives = 326/341 (95.60%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            LSGAVGI+IGLSP+MLATLGTNTYNSIAKYPLIAIPLFI+TGLIFER+GVALRLVRFAQALIG RHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGL PGILAGLALLVPA++VS+RYGWEG   +  AEQL V  TFKQA+PALFAPVLILGGLRSGLFTPTEAAVVAVAYG +VGLFLTRE+ L+DLW L GEAA+ISGVVMLII+LAGIFAWAGTMLGTFRHLAEWII L+D+GV+LL+L+MLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL
Sbjct:   27 LSGAVGILIGLSPEMLATLGTNTYNSIAKYPLIAIPLFIMTGLIFERAGVALRLVRFAQALIGQRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLLPGILAGLALLVPALLVSKRYGWEGRHAMPQAEQLKVGETFKQALPALFAPVLILGGLRSGLFTPTEAAVVAVAYGILVGLFLTREIGLKDLWGLFGEAAVISGVVMLIISLAGIFAWAGTMLGTFRHLAEWIIGLSDSGVLLLVLIMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 367

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: W1N8N1_9GAMM (C4-dicarboxylate ABC transporter n=3 Tax=Halomonas TaxID=2745 RepID=W1N8N1_9GAMM)

HSP 1 Score: 544 bits (1402), Expect = 5.360e-192
Identity = 297/341 (87.10%), Postives = 320/341 (93.84%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            LSGAVGI +GLSP+MLATLGTNTYNS+AKYPLIAIPLFILTGLIFER+GVA RLVRFAQALIGPRHGGLA+VAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYP+PFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGL+LL+PA +++RRYGWE   P D  E+  +  +F++AIPALFAPVLILGGLRSGLFTPTEAAVVAVAYG VVGL LTREL+ RDLWELLGEAA+ISGVVMLIIALAGIFAWAGT LGTFRHLAEW+I L+DNG +LL+L+MLAVL AGMLLDAISIYLIMMPILIPVMQHF WNPVWFGILL
Sbjct:   27 LSGAVGIFVGLSPNMLATLGTNTYNSVAKYPLIAIPLFILTGLIFERAGVAARLVRFAQALIGPRHGGLAVVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPRPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLSLLIPAWLLARRYGWED--PHD-VERPPLGESFRKAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGVVVGLALTRELNWRDLWELLGEAAVISGVVMLIIALAGIFAWAGTTLGTFRHLAEWVIGLSDNGALLLVLIMLAVLAAGMLLDAISIYLIMMPILIPVMQHFGWNPVWFGILL 364

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A1B8NWT3_HALEL (Sialic acid TRAP transporter permease protein SiaT n=6 Tax=Halomonas TaxID=2745 RepID=A0A1B8NWT3_HALEL)

HSP 1 Score: 541 bits (1395), Expect = 6.220e-191
Identity = 294/341 (86.22%), Postives = 317/341 (92.96%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            LSGAVGIV GLSP ML+TLGTNTYNS+AKYPLIAIPLFILTGLIFER+GVA RLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMT+AGYP+PFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPG+LAG ALLVPA  ++RRY WE     +  E+  +  +F+QAIPALFAP+LILGGLRSGLFTPTEAAVVAVAYG VVGL+LTREL  RDLWEL GEAA+ISGVVMLIIALAGIFAWAGTMLGTFRH+AEW+I L+DNGV+LL L+MLAVLVAGMLLDAISIYLI+MPILIPVMQHF+WNPVWFGILL
Sbjct:   27 LSGAVGIVAGLSPSMLSTLGTNTYNSVAKYPLIAIPLFILTGLIFERAGVAARLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTRAGYPRPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGMLAGAALLVPAWWLARRYRWEAP---ENVERPPLAESFRQAIPALFAPILILGGLRSGLFTPTEAAVVAVAYGVVVGLWLTRELGWRDLWELFGEAAVISGVVMLIIALAGIFAWAGTMLGTFRHMAEWVIGLSDNGVLLLALIMLAVLVAGMLLDAISIYLILMPILIPVMQHFDWNPVWFGILL 364

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A1M5A3N0_9GAMM (TRAP transporter, DctM subunit n=8 Tax=Halomonas TaxID=2745 RepID=A0A1M5A3N0_9GAMM)

HSP 1 Score: 539 bits (1388), Expect = 7.750e-190
Identity = 291/341 (85.34%), Postives = 320/341 (93.84%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            L+GAVGIV GLSP MLATLGTNTYNS+AKYPLIAIPLFILTGLIFER+GVA RLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMT+AGYP+PFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGL+LLVPA  +SRR+GWE  T V   E+  +  +F+QA+PALFAPV+ILGGLRSGLFTPTEAAVVAVAYG +VG+F+TREL +RDLW+L GEAA ISGVVMLIIALAGIFAWAGTMLGTFRH+AEW+I+L+D+G +LLIL+MLAVL AGMLLDAISIYLI+MPIL+PVMQHF+WNPVWFGILL
Sbjct:   28 LAGAVGIVSGLSPMMLATLGTNTYNSVAKYPLIAIPLFILTGLIFERAGVAARLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTRAGYPRPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLSLLVPAFWLSRRHGWEAPTEV---ERPPLGDSFRQALPALFAPVIILGGLRSGLFTPTEAAVVAVAYGVLVGVFVTRELGMRDLWQLFGEAATISGVVMLIIALAGIFAWAGTMLGTFRHMAEWLIALSDDGTLLLILIMLAVLAAGMLLDAISIYLILMPILVPVMQHFDWNPVWFGILL 365

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BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: A0A139C6J9_9GAMM (TRAP transporter large transmembrane protein n=5 Tax=Oceanospirillales TaxID=135619 RepID=A0A139C6J9_9GAMM)

HSP 1 Score: 538 bits (1387), Expect = 1.020e-189
Identity = 294/341 (86.22%), Postives = 318/341 (93.26%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            L+GAVGIV GLSPDMLA LGTNTYNSIAKYPLIAIPLFILTGLIFER+GVA RLVRFAQALIGPRHGGLALVAVLVC+IMGGMSGSGPADAAAVAMVMLPSMT+AGYP+PFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAG+ALL+PA  +SRR+GWE  + V   E+ ++  +F+QAIPALFAPVLILGGLRSGLFTPTEAAV AVAYG VVGLFLTREL  R+LW L+GEAA ISGVVMLIIALAGIFAWAGTMLGTFRHLAEW+I+L+DNG VLL L+M+AVL+AGMLLDAISIYLI+MPILIPVMQHF WNPVWFGILL
Sbjct:   27 LAGAVGIVTGLSPDMLAALGTNTYNSIAKYPLIAIPLFILTGLIFERAGVAARLVRFAQALIGPRHGGLALVAVLVCLIMGGMSGSGPADAAAVAMVMLPSMTRAGYPRPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGVALLLPAFWLSRRHGWEAPSEV---ERPALGESFRQAIPALFAPVLILGGLRSGLFTPTEAAVAAVAYGVVVGLFLTRELDWRELWRLVGEAATISGVVMLIIALAGIFAWAGTMLGTFRHLAEWLITLSDNGAVLLTLIMIAVLLAGMLLDAISIYLILMPILIPVMQHFGWNPVWFGILL 364

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Match: F6AIC0_PSEF1 (TRAP dicarboxylate transporter, DctM subunit n=7 Tax=Pseudomonas TaxID=286 RepID=F6AIC0_PSEF1)

HSP 1 Score: 538 bits (1387), Expect = 1.060e-189
Identity = 289/341 (84.75%), Postives = 314/341 (92.08%), Query Frame = 1

Query:    1 LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGVALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAAGLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPALFAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGEAAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVMLAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL 1023
            L+GA+GIV GLSPDMLATLGTNTYNS+AKYPLIAIPLFILTGL+FE++GVA+RLVRFAQA+IGPRHGGLA+VAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSAT+IAASASTAILIPPS+ALILYSIVVPGVDLRALFAAGLFPGILAGL LL+P  ++SRRYGWE      G E+  +  +FK A+PALFAP+LILGGLRSGLFTPTEAAV AVAYG +VGLFLTREL  R LW L GEAA+ISGVVMLIIALAGIFAWAGTMLGTFRHLAEW+ISL+DNG  LLILVMLAVL+ GMLLDAISIYLI+MPILIPVMQHF WNPVWFGILL
Sbjct:   27 LAGAIGIVAGLSPDMLATLGTNTYNSVAKYPLIAIPLFILTGLVFEKAGVAVRLVRFAQAVIGPRHGGLAMVAVLVCMIMGGMSGSGPADAAAVAMVMLPSMTKAGYPKPFSATVIAASASTAILIPPSIALILYSIVVPGVDLRALFAAGLFPGILAGLTLLLPVWLISRRYGWEAP---QGEERPPLWASFKDALPALFAPILILGGLRSGLFTPTEAAVAAVAYGILVGLFLTRELDWRSLWRLCGEAAVISGVVMLIIALAGIFAWAGTMLGTFRHLAEWMISLSDNGTTLLILVMLAVLLVGMLLDAISIYLILMPILIPVMQHFGWNPVWFGILL 364

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig14981.2890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D5M0D4_9GAMM	4.880e-219	97.36	TRAP dicarboxylate transporter, DctM subunit n=81 ...	[more]
A0A0F9YBA4_9ZZZZ	9.850e-219	97.65	DctM domain-containing protein n=42 Tax=root TaxID...	[more]
H0IYH5_9GAMM	1.330e-216	96.48	TRAP dicarboxylate transporter subunit DctM n=13 T...	[more]
A0A3Q8WFC3_9GAMM	2.240e-210	94.13	TRAP transporter large permease n=9 Tax=Halomonada...	[more]
A0A2N7TYL1_9GAMM	4.450e-201	90.03	C4-dicarboxylate ABC transporter n=1 Tax=Halomonas...	[more]
W1N8N1_9GAMM	5.360e-192	87.10	C4-dicarboxylate ABC transporter n=3 Tax=Halomonas...	[more]
A0A1B8NWT3_HALEL	6.220e-191	86.22	Sialic acid TRAP transporter permease protein SiaT...	[more]
A0A1M5A3N0_9GAMM	7.750e-190	85.34	TRAP transporter, DctM subunit n=8 Tax=Halomonas T...	[more]
A0A139C6J9_9GAMM	1.020e-189	86.22	TRAP transporter large transmembrane protein n=5 T...	[more]
F6AIC0_PSEF1	1.060e-189	84.75	TRAP dicarboxylate transporter, DctM subunit n=7 T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig14981	contig	E-siliculosus-1a_F_contig14981:3..1025 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	0
Stop	0
Cds size	1023
Model size	1023
Exons	1
Hectar predicted targeting category	signal peptide
Best eggNOG OG	NA\|NA\|NA
Best tax level	Oceanospirillales
COG Functional cat.	G
EggNOG OGs	1MU0F@1224,1RNAM@1236,1XNW1@135619,COG1593@1,COG1593@2
EggNOG free text desc.	transporter
Preferred name	siaT_2
Seed eggNOG ortholog	1415755.JQLV01000002_gene646
Seed ortholog evalue	1.6e-172
Seed ortholog score	612.1
Taxonomic scope	Bacteria

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928007.9806044-CDS-E-siliculosus-1a_F_contig14981:2..1025	1622928007.9806044-CDS-E-siliculosus-1a_F_contig14981:2..1025	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig14981 3..1025 +
1696318770.2025554-CDS-E-siliculosus-1a_F_contig14981:2..1025	1696318770.2025554-CDS-E-siliculosus-1a_F_contig14981:2..1025	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig14981 3..1025 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig14981.2890.1	prot_E-siliculosus-1a_F_contig14981.2890.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig14981 3..1025 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig14981:3..1025+
coding sequence from alignment at E-siliculosus-1a_F_contig14981:3..1025+

protein sequence of mRNA_E-siliculosus-1a_F_contig14981.2890.1

>prot_E-siliculosus-1a_F_contig14981.2890.1 ID=prot_E-siliculosus-1a_F_contig14981.2890.1|Name=mRNA_E-siliculosus-1a_F_contig14981.2890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=341bp
LSGAVGIVIGLSPDMLATLGTNTYNSIAKYPLIAIPLFILTGLIFERSGV
ALRLVRFAQALIGPRHGGLALVAVLVCMIMGGMSGSGPADAAAVAMVMLP
SMTKAGYPKPFSATLIAASASTAILIPPSVALILYSIVVPGVDLRALFAA
GLFPGILAGLALLVPAMIVSRRYGWEGGTPVDGAEQLSVRTTFKQAIPAL
FAPVLILGGLRSGLFTPTEAAVVAVAYGAVVGLFLTRELSLRDLWELLGE
AAIISGVVMLIIALAGIFAWAGTMLGTFRHLAEWIISLTDNGVVLLILVM
LAVLVAGMLLDAISIYLIMMPILIPVMQHFEWNPVWFGILL

mRNA from alignment at E-siliculosus-1a_F_contig14981:3..1025+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig14981.2890.1 ID=mRNA_E-siliculosus-1a_F_contig14981.2890.1|Name=mRNA_E-siliculosus-1a_F_contig14981.2890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1023bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14981:3..1025+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTTCCGGCGCGGTAGGTATTGTCATTGGGCTGTCGCCGGATATGCTCGC
GACACTAGGAACCAATACCTATAACAGCATTGCCAAGTATCCGTTGATCG
CAATTCCACTGTTTATATTAACCGGGCTTATTTTTGAGCGCTCAGGCGTT
GCGCTGCGATTAGTTCGCTTCGCCCAGGCGTTGATTGGCCCACGCCATGG
TGGTTTGGCGTTGGTCGCGGTACTGGTATGCATGATTATGGGCGGCATGA
GTGGCTCCGGTCCTGCGGATGCGGCGGCCGTCGCCATGGTGATGTTGCCA
AGCATGACTAAAGCTGGCTATCCGAAGCCGTTTTCGGCCACGCTGATTGC
CGCCTCTGCCTCTACGGCGATTCTTATTCCGCCTTCAGTAGCACTGATTC
TTTATTCAATCGTCGTACCTGGAGTTGATCTGCGTGCCCTGTTCGCCGCT
GGCTTGTTTCCCGGTATTTTAGCGGGGCTGGCGTTACTCGTGCCTGCCAT
GATTGTTTCTAGGCGCTACGGTTGGGAGGGCGGCACACCCGTTGACGGTG
CCGAGCAGCTTAGCGTTCGCACCACCTTTAAGCAGGCAATACCTGCTCTG
TTTGCTCCGGTGCTGATTTTAGGTGGCTTGCGTTCTGGGCTGTTTACACC
CACCGAAGCCGCCGTGGTGGCGGTAGCCTATGGCGCGGTCGTAGGGCTTT
TCCTCACCCGTGAGCTTTCGCTGCGGGATTTGTGGGAGCTGCTTGGGGAA
GCAGCGATTATCTCGGGAGTGGTGATGCTTATCATCGCGTTGGCGGGCAT
TTTTGCCTGGGCGGGGACCATGTTAGGTACCTTCCGACATTTAGCAGAGT
GGATTATTAGTTTGACCGATAACGGTGTAGTACTACTGATATTGGTAATG
CTCGCGGTTTTGGTCGCTGGAATGCTGTTAGACGCGATATCGATTTATTT
GATCATGATGCCGATCCTGATTCCCGTTATGCAGCACTTTGAATGGAATC
CGGTATGGTTTGGGATTCTATTG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14981:3..1025+

>mRNA_E-siliculosus-1a_F_contig14981.2890.1 ID=mRNA_E-siliculosus-1a_F_contig14981.2890.1|Name=mRNA_E-siliculosus-1a_F_contig14981.2890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14981:3..1025+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTTCCGGCGCGGTAGGTATTGTCATTGGGCTGTCGCCGGATATGCTCGC
GACACTAGGAACCAATACCTATAACAGCATTGCCAAGTATCCGTTGATCG
CAATTCCACTGTTTATATTAACCGGGCTTATTTTTGAGCGCTCAGGCGTT
GCGCTGCGATTAGTTCGCTTCGCCCAGGCGTTGATTGGCCCACGCCATGG
TGGTTTGGCGTTGGTCGCGGTACTGGTATGCATGATTATGGGCGGCATGA
GTGGCTCCGGTCCTGCGGATGCGGCGGCCGTCGCCATGGTGATGTTGCCA
AGCATGACTAAAGCTGGCTATCCGAAGCCGTTTTCGGCCACGCTGATTGC
CGCCTCTGCCTCTACGGCGATTCTTATTCCGCCTTCAGTAGCACTGATTC
TTTATTCAATCGTCGTACCTGGAGTTGATCTGCGTGCCCTGTTCGCCGCT
GGCTTGTTTCCCGGTATTTTAGCGGGGCTGGCGTTACTCGTGCCTGCCAT
GATTGTTTCTAGGCGCTACGGTTGGGAGGGCGGCACACCCGTTGACGGTG
CCGAGCAGCTTAGCGTTCGCACCACCTTTAAGCAGGCAATACCTGCTCTG
TTTGCTCCGGTGCTGATTTTAGGTGGCTTGCGTTCTGGGCTGTTTACACC
CACCGAAGCCGCCGTGGTGGCGGTAGCCTATGGCGCGGTCGTAGGGCTTT
TCCTCACCCGTGAGCTTTCGCTGCGGGATTTGTGGGAGCTGCTTGGGGAA
GCAGCGATTATCTCGGGAGTGGTGATGCTTATCATCGCGTTGGCGGGCAT
TTTTGCCTGGGCGGGGACCATGTTAGGTACCTTCCGACATTTAGCAGAGT
GGATTATTAGTTTGACCGATAACGGTGTAGTACTACTGATATTGGTAATG
CTCGCGGTTTTGGTCGCTGGAATGCTGTTAGACGCGATATCGATTTATTT
GATCATGATGCCGATCCTGATTCCCGTTATGCAGCACTTTGAATGGAATC
CGGTATGGTTTGGGATTCTATTGCTTTCCGGCGCGGTAGGTATTGTCATT
GGGCTGTCGCCGGATATGCTCGCGACACTAGGAACCAATACCTATAACAG
CATTGCCAAGTATCCGTTGATCGCAATTCCACTGTTTATATTAACCGGGC
TTATTTTTGAGCGCTCAGGCGTTGCGCTGCGATTAGTTCGCTTCGCCCAG
GCGTTGATTGGCCCACGCCATGGTGGTTTGGCGTTGGTCGCGGTACTGGT
ATGCATGATTATGGGCGGCATGAGTGGCTCCGGTCCTGCGGATGCGGCGG
CCGTCGCCATGGTGATGTTGCCAAGCATGACTAAAGCTGGCTATCCGAAG
CCGTTTTCGGCCACGCTGATTGCCGCCTCTGCCTCTACGGCGATTCTTAT
TCCGCCTTCAGTAGCACTGATTCTTTATTCAATCGTCGTACCTGGAGTTG
ATCTGCGTGCCCTGTTCGCCGCTGGCTTGTTTCCCGGTATTTTAGCGGGG
CTGGCGTTACTCGTGCCTGCCATGATTGTTTCTAGGCGCTACGGTTGGGA
GGGCGGCACACCCGTTGACGGTGCCGAGCAGCTTAGCGTTCGCACCACCT
TTAAGCAGGCAATACCTGCTCTGTTTGCTCCGGTGCTGATTTTAGGTGGC
TTGCGTTCTGGGCTGTTTACACCCACCGAAGCCGCCGTGGTGGCGGTAGC
CTATGGCGCGGTCGTAGGGCTTTTCCTCACCCGTGAGCTTTCGCTGCGGG
ATTTGTGGGAGCTGCTTGGGGAAGCAGCGATTATCTCGGGAGTGGTGATG
CTTATCATCGCGTTGGCGGGCATTTTTGCCTGGGCGGGGACCATGTTAGG
TACCTTCCGACATTTAGCAGAGTGGATTATTAGTTTGACCGATAACGGTG
TAGTACTACTGATATTGGTAATGCTCGCGGTTTTGGTCGCTGGAATGCTG
TTAGACGCGATATCGATTTATTTGATCATGATGCCGATCCTGATTCCCGT
TATGCAGCACTTTGAATGGAATCCGGTATGGTTTGGGATTCTATTG