mRNA_E-siliculosus-1a_F_contig14974.2888.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14974.2888.1
Unique NamemRNA_E-siliculosus-1a_F_contig14974.2888.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14974.2888.1 vs. uniprot
Match: UPI001D0AE8B7 (BapA prefix-like domain-containing protein n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0AE8B7)

HSP 1 Score: 60.1 bits (144), Expect = 3.640e-6
Identity = 109/268 (40.67%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:    1 LSPLLGSTFSPDDPNGLDELDNLLQGVAGNVGDLLDPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDLLDEGGHLDELLGTLLGEGGLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILSELLXXXXXXXXXXXXXXXXXLGENDDLLGGXLGGNGSLNXXXXXXXXXXXXXXXXXXXXXXXFDAGEELIVGLLSELANALGLDLGDLIDAELLAQLIGADGIVN 804
            LSPLLG  F+PDDPNGLDELD L+  VA  +G LLDP+                                                    L+ E G LD LL TLLG+G L+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +L+ LL           XXX   LG++   L G L  NG++                         +  + L V L  ELA +LGLDLGDL+  ELL  L+   G V+
Sbjct:  438 LSPLLGREFTPDDPNGLDELDGLVGEVADQLGVLLDPVIAPLLGEGLSEAVFDAIGLQVDYATDSITNLLQDGLLGGVLAGLGLAGTMEGLIGEDGQLDALLQTLLGDGSLIAGTLTEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQGSVLNSLLSALLDDQEVLGXXXSGVLGDDGGALSGLLR-NGAMEGLLDESGLLAMILGSQGVLG----EVIDTLEVSL-GELAASLGLDLGDLLGGELLPGLLNEGGAVD 699
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14974.2888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001D0AE8B73.640e-640.67BapA prefix-like domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14974contigE-siliculosus-1a_F_contig14974:3..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1026
Model size1026
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928007.7891736-CDS-E-siliculosus-1a_F_contig14974:2..10281622928007.7891736-CDS-E-siliculosus-1a_F_contig14974:2..1028Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14974 3..1028 -
1696318770.1316633-CDS-E-siliculosus-1a_F_contig14974:2..10281696318770.1316633-CDS-E-siliculosus-1a_F_contig14974:2..1028Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14974 3..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14974.2888.1prot_E-siliculosus-1a_F_contig14974.2888.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14974 3..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14974.2888.1

>prot_E-siliculosus-1a_F_contig14974.2888.1 ID=prot_E-siliculosus-1a_F_contig14974.2888.1|Name=mRNA_E-siliculosus-1a_F_contig14974.2888.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=342bp
LSPLLGSTFSPDDPNGLDELDNLLQGVAGNVGDLLDPILGPLLGEGLAET
IFNELGLQVDYATDAIVNLLTDGFLGGVLAGLGLGDILNDLLDEGGHLDE
LLGTLLGEGGLVGGLLAEEGLIGGLLAEHGIIGNLLADNGTLALLLGDDG
LLGSLLNDGGILSELLGSLLADESLLGQLLGGLLGENDDLLGGLLGGNGS
LNGLLLDEDGLLAALIGSQGILGGLFDAGEELIVGLLSELANALGLDLGD
LIDAELLAQLIGADGIVNELMDALVGPEGLLTELLGQEGIAGNLLEGLLN
EDGPLADVINQLVGENGLLTQVLAGLPSEQLESLLDGLLGDD
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mRNA from alignment at E-siliculosus-1a_F_contig14974:3..1028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14974.2888.1 ID=mRNA_E-siliculosus-1a_F_contig14974.2888.1|Name=mRNA_E-siliculosus-1a_F_contig14974.2888.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14974:3..1028- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTATCGCCTCTGCTGGGCAGTACCTTCTCGCCAGATGATCCTAACGGCCT
GGATGAGTTGGATAACCTGCTTCAGGGCGTGGCTGGCAACGTGGGAGATT
TGCTAGATCCTATCCTTGGACCATTGCTTGGGGAGGGCCTGGCTGAGACC
ATCTTTAATGAGCTTGGTCTGCAAGTAGACTATGCCACAGATGCCATTGT
TAACTTGCTTACCGATGGCTTCCTAGGAGGAGTGCTAGCTGGACTAGGGT
TAGGCGACATCCTAAATGACTTGCTTGATGAAGGTGGTCATCTCGATGAG
CTGCTAGGAACGCTGCTGGGTGAAGGCGGTCTTGTTGGTGGCCTGTTAGC
AGAAGAAGGGCTAATTGGTGGGCTGCTAGCTGAGCACGGCATTATCGGTA
ACTTACTGGCTGATAACGGTACTTTGGCTCTACTGCTGGGTGATGATGGC
CTATTAGGTAGCTTGCTCAATGACGGTGGAATCCTCAGTGAGTTACTAGG
CAGCCTATTGGCAGATGAAAGTTTACTGGGTCAACTGCTTGGCGGTCTGC
TGGGAGAAAATGATGACCTGTTGGGTGGTCTGCTAGGTGGCAACGGTTCA
CTGAATGGCTTGCTGCTGGATGAAGACGGCCTACTAGCGGCGTTGATTGG
CTCGCAAGGCATCCTGGGCGGTCTATTTGATGCTGGCGAAGAGCTCATTG
TAGGACTCTTGTCTGAGCTGGCGAATGCGCTAGGGCTGGATCTTGGAGAC
CTTATCGATGCAGAGCTGCTTGCTCAATTAATCGGTGCTGATGGCATTGT
TAATGAGCTGATGGATGCTCTGGTCGGACCTGAGGGGCTTTTGACTGAGT
TGCTTGGTCAGGAAGGGATTGCGGGTAATTTGCTCGAAGGTCTTCTGAAT
GAAGATGGCCCATTAGCTGACGTTATTAATCAACTCGTTGGCGAGAATGG
TCTCCTGACACAAGTGCTAGCTGGCCTGCCTTCAGAGCAACTTGAAAGCT
TGCTGGACGGTTTGCTCGGCGACGAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14974:3..1028-

>mRNA_E-siliculosus-1a_F_contig14974.2888.1 ID=mRNA_E-siliculosus-1a_F_contig14974.2888.1|Name=mRNA_E-siliculosus-1a_F_contig14974.2888.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14974:3..1028- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTATCGCCTCTGCTGGGCAGTACCTTCTCGCCAGATGATCCTAACGGCCT
GGATGAGTTGGATAACCTGCTTCAGGGCGTGGCTGGCAACGTGGGAGATT
TGCTAGATCCTATCCTTGGACCATTGCTTGGGGAGGGCCTGGCTGAGACC
ATCTTTAATGAGCTTGGTCTGCAAGTAGACTATGCCACAGATGCCATTGT
TAACTTGCTTACCGATGGCTTCCTAGGAGGAGTGCTAGCTGGACTAGGGT
TAGGCGACATCCTAAATGACTTGCTTGATGAAGGTGGTCATCTCGATGAG
CTGCTAGGAACGCTGCTGGGTGAAGGCGGTCTTGTTGGTGGCCTGTTAGC
AGAAGAAGGGCTAATTGGTGGGCTGCTAGCTGAGCACGGCATTATCGGTA
ACTTACTGGCTGATAACGGTACTTTGGCTCTACTGCTGGGTGATGATGGC
CTATTAGGTAGCTTGCTCAATGACGGTGGAATCCTCAGTGAGTTACTAGG
CAGCCTATTGGCAGATGAAAGTTTACTGGGTCAACTGCTTGGCGGTCTGC
TGGGAGAAAATGATGACCTGTTGGGTGGTCTGCTAGGTGGCAACGGTTCA
CTGAATGGCTTGCTGCTGGATGAAGACGGCCTACTAGCGGCGTTGATTGG
CTCGCAAGGCATCCTGGGCGGTCTATTTGATGCTGGCGAAGAGCTCATTG
TAGGACTCTTGTCTGAGCTGGCGAATGCGCTAGGGCTGGATCTTGGAGAC
CTTATCGATGCAGAGCTGCTTGCTCAATTAATCGGTGCTGATGGCATTGT
TAATGAGCTGATGGATGCTCTGGTCGGACCTGAGGGGCTTTTGACTGAGT
TGCTTGGTCAGGAAGGGATTGCGGGTAATTTGCTCGAAGGTCTTCTGAAT
GAAGATGGCCCATTAGCTGACGTTATTAATCAACTCGTTGGCGAGAATGG
TCTCCTGACACAAGTGCTAGCTGGCCTGCCTTCAGAGCAACTTGAAAGCT
TGCTGGACGGTTTGCTCGGCGACGATTTATCGCCTCTGCTGGGCAGTACC
TTCTCGCCAGATGATCCTAACGGCCTGGATGAGTTGGATAACCTGCTTCA
GGGCGTGGCTGGCAACGTGGGAGATTTGCTAGATCCTATCCTTGGACCAT
TGCTTGGGGAGGGCCTGGCTGAGACCATCTTTAATGAGCTTGGTCTGCAA
GTAGACTATGCCACAGATGCCATTGTTAACTTGCTTACCGATGGCTTCCT
AGGAGGAGTGCTAGCTGGACTAGGGTTAGGCGACATCCTAAATGACTTGC
TTGATGAAGGTGGTCATCTCGATGAGCTGCTAGGAACGCTGCTGGGTGAA
GGCGGTCTTGTTGGTGGCCTGTTAGCAGAAGAAGGGCTAATTGGTGGGCT
GCTAGCTGAGCACGGCATTATCGGTAACTTACTGGCTGATAACGGTACTT
TGGCTCTACTGCTGGGTGATGATGGCCTATTAGGTAGCTTGCTCAATGAC
GGTGGAATCCTCAGTGAGTTACTAGGCAGCCTATTGGCAGATGAAAGTTT
ACTGGGTCAACTGCTTGGCGGTCTGCTGGGAGAAAATGATGACCTGTTGG
GTGGTCTGCTAGGTGGCAACGGTTCACTGAATGGCTTGCTGCTGGATGAA
GACGGCCTACTAGCGGCGTTGATTGGCTCGCAAGGCATCCTGGGCGGTCT
ATTTGATGCTGGCGAAGAGCTCATTGTAGGACTCTTGTCTGAGCTGGCGA
ATGCGCTAGGGCTGGATCTTGGAGACCTTATCGATGCAGAGCTGCTTGCT
CAATTAATCGGTGCTGATGGCATTGTTAATGAGCTGATGGATGCTCTGGT
CGGACCTGAGGGGCTTTTGACTGAGTTGCTTGGTCAGGAAGGGATTGCGG
GTAATTTGCTCGAAGGTCTTCTGAATGAAGATGGCCCATTAGCTGACGTT
ATTAATCAACTCGTTGGCGAGAATGGTCTCCTGACACAAGTGCTAGCTGG
CCTGCCTTCAGAGCAACTTGAAAGCTTGCTGGACGGTTTGCTCGGCGACG
AT
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