mRNA_E-siliculosus-1a_F_contig14959.2880.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14959.2880.1
Unique NamemRNA_E-siliculosus-1a_F_contig14959.2880.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14959.2880.1 vs. uniprot
Match: D7G8E4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E4_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 4.140e-118
Identity = 223/247 (90.28%), Postives = 229/247 (92.71%), Query Frame = 3 
Query:  288 DDKRETWDMKKVLRTATEAYSDRVGQQGGGATRINANRKPGAGCGATAVGRGGERARMSAAAQTVQVAFRQRMFHRFVWAQTYLRGPTHAYEVFKRCLPMPRGXXXXXXXXXXXXXXXXXXPPAALADVASAAVNLVDAWPELPGFCPSFPHHVHAADPIFLRYLRSSTRESSDISFSSATSTP-EEGTQTGKTPPTASASTGAGVSSPGRPXXXXXXXXXXXXXXXXNPDFAEAFERKYHIRTAAV 1025
            DDKRETWDMKKVLRTATEAYSDRVG+QGGGATRINANR+ GAGCGATAVGRGGERARMSAAAQTVQVAFRQRMFHRFVWAQ YLRGPTHAYEVFKRCLPMPRG XXXXXXXXXXXXXXXX  PAALADVASAAVNLVDAWPELPGFCPSFPHHVHAADPIFLRYLRS T +S DISFSSAT+T  EEGT+TGKTPPTASASTGAGVSSPGRPXXXXXXXXX       N +FAEAFERKYHIRTAAV
Sbjct:  263 DDKRETWDMKKVLRTATEAYSDRVGKQGGGATRINANRQSGAGCGATAVGRGGERARMSAAAQTVQVAFRQRMFHRFVWAQAYLRGPTHAYEVFKRCLPMPRGGXXXXXXXXXXXXXXXXLRPAALADVASAAVNLVDAWPELPGFCPSFPHHVHAADPIFLRYLRSCTPKSYDISFSSATTTTQEEGTETGKTPPTASASTGAGVSSPGRPXXXXXXXXX-------NQEFAEAFERKYHIRTAAV 502
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BLAST of mRNA_E-siliculosus-1a_F_contig14959.2880.1 vs. uniprot
Match: A0A6H5L1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z0_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 7.880e-117
Identity = 217/272 (79.78%), Postives = 223/272 (81.99%), Query Frame = 3 
Query:  246 RSKNKK*CFCQ*RQDDKRETWDMKKVLRTATEAYSDRVGQQGGGATRINANRKPGAGCGATAVGRGGERARMSAAAQTVQVAFRQRMFHRFVWAQTYLRGPTHAYEVFKRCLPMPRGXXXXXXXXXXXXXXXXXXPP------------AALADVASAAVNLVDAWPELPGFCPSFPHHVHAADPIFLRYLRSSTRESSDISFSSATSTPEEGTQTGKTPPTASASTGAGVSSPGRPXXXXXXXXXXXXXXXXNPDFAEAFERKYHIRTAAV 1025
            R+KNK         DDKRETWDMKKVLRTATEAYSDRVGQQGGGATRINANRKPGAGCGATAVG GGERARMSAAAQTVQVAFRQRMFHRFVWAQ YLRGPTHAYEVFKRCLPMPRGXXXXXXXXXXXXXXXXXX               ALADVASAAVNLVDAWPELPGFCPSFPHHVH+ADPIFLRYLRS TRESS ISFSSAT+T EEG  TG+ PPTASASTGAGVSSPGRP                NP+F EAFERKY+IRTAAV
Sbjct:   84 RTKNKASV-----SDDKRETWDMKKVLRTATEAYSDRVGQQGGGATRINANRKPGAGCGATAVGTGGERARMSAAAQTVQVAFRQRMFHRFVWAQAYLRGPTHAYEVFKRCLPMPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQSTALADVASAAVNLVDAWPELPGFCPSFPHHVHSADPIFLRYLRSCTRESSGISFSSATTTAEEGAATGRAPPTASASTGAGVSSPGRPPQQTQQQQH-------NPEFGEAFERKYNIRTAAV 343
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14959.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8E4_ECTSI4.140e-11890.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Z0_9PHAE7.880e-11779.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14959contigE-siliculosus-1a_F_contig14959:2..1026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size714
Model size1025
Exons1
Ec32 orthologEc-00_010860.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.624271-CDS-E-siliculosus-1a_F_contig14959:1..7151622928006.624271-CDS-E-siliculosus-1a_F_contig14959:1..715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14959 2..715 -
1696318769.5422544-CDS-E-siliculosus-1a_F_contig14959:1..7151696318769.5422544-CDS-E-siliculosus-1a_F_contig14959:1..715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14959 2..715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.6398716-UTR-E-siliculosus-1a_F_contig14959:715..10261622928006.6398716-UTR-E-siliculosus-1a_F_contig14959:715..1026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14959 716..1026 -
1696318769.552435-UTR-E-siliculosus-1a_F_contig14959:715..10261696318769.552435-UTR-E-siliculosus-1a_F_contig14959:715..1026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14959 716..1026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14959.2880.1prot_E-siliculosus-1a_F_contig14959.2880.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14959 2..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14959.2880.1

>prot_E-siliculosus-1a_F_contig14959.2880.1 ID=prot_E-siliculosus-1a_F_contig14959.2880.1|Name=mRNA_E-siliculosus-1a_F_contig14959.2880.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=238bp
MKKVLRTATEAYSDRVGQQGGGATRINANRKPGAGCGATAVGRGGERARM
SAAAQTVQVAFRQRMFHRFVWAQTYLRGPTHAYEVFKRCLPMPRGGGGGN
FASAATPHHPPPLPPAALADVASAAVNLVDAWPELPGFCPSFPHHVHAAD
PIFLRYLRSSTRESSDISFSSATSTPEEGTQTGKTPPTASASTGAGVSSP
GRPPQPTQQQQQQQQQQQQNPDFAEAFERKYHIRTAAV
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mRNA from alignment at E-siliculosus-1a_F_contig14959:2..1026-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14959.2880.1 ID=mRNA_E-siliculosus-1a_F_contig14959.2880.1|Name=mRNA_E-siliculosus-1a_F_contig14959.2880.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1025bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14959:2..1026- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAACCGCTGCAACTTAAACCAAAATTGTTGCAGGAGGCAGTCAACCGTAC
GAAAGTAGTGCTCAAGCTCCTGGAGGCAAAGGCCGCCGCCTCGAGTCTAC
CCCAGCCCAGCGGCGGCAATGGACATGCTGCCGGAGGTACGGCCGGCGCC
GTGGGCAGGAACCCTAGCGGGAACTCCCCCGGCGCTCGCGGCCATGGGTC
ACGCCGTCACCGAGGCTCCCACCACTCCCCACCTGAGGCTAATAACGATC
GAAGAATAAAAAATAATGCTTCTGTCAGTGACGACAAGACGACAAGCGCG
AAACGTGGGACATGAAGAAGGTTCTACGGACGGCCACAGAGGCGTACAGC
GACCGGGTCGGCCAGCAGGGGGGGGGGGCGACAAGGATCAATGCGAACAG
AAAGCCCGGGGCCGGTTGTGGGGCAACGGCGGTAGGGAGAGGCGGAGAGA
GAGCCAGGATGTCTGCCGCCGCGCAAACGGTCCAGGTAGCGTTTCGGCAA
CGGATGTTCCACCGGTTCGTCTGGGCGCAGACCTATCTGCGCGGCCCCAC
GCACGCGTACGAGGTCTTCAAGCGTTGCCTTCCCATGCCACGCGGCGGCG
GCGGCGGAAATTTCGCAAGCGCCGCCACGCCGCACCACCCCCCTCCTCTT
CCACCTGCTGCGCTCGCTGACGTAGCCTCAGCCGCGGTCAACCTCGTCGA
CGCGTGGCCTGAGCTCCCGGGCTTTTGCCCGTCCTTCCCTCACCATGTCC
ATGCTGCGGACCCGATCTTTCTCCGATACCTTCGTTCTTCCACTCGTGAG
AGTTCTGATATCTCCTTCTCCAGCGCTACTTCGACGCCGGAGGAAGGAAC
CCAAACGGGGAAGACTCCACCAACGGCGTCGGCGTCAACCGGGGCTGGGG
TATCTTCTCCTGGTCGTCCTCCGCAGCCGACGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAAAACCCGGATTTTGCTGAGGCTTTCGAGCGAAA
GTACCACATCCGCACGGCCGCTGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14959:2..1026-

>mRNA_E-siliculosus-1a_F_contig14959.2880.1 ID=mRNA_E-siliculosus-1a_F_contig14959.2880.1|Name=mRNA_E-siliculosus-1a_F_contig14959.2880.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1428bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14959:2..1026- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGAAGGTTCTACGGACGGCCACAGAGGCGTACAGCGACCGGGTCGG
CCAGCAGGGGGGGGGGGCGACAAGGATCAATGCGAACAGAAAGCCCGGGG
CCGGTTGTGGGGCAACGGCGGTAGGGAGAGGCGGAGAGAGAGCCAGGATG
TCTGCCGCCGCGCAAACGGTCCAGGTAGCGTTTCGGCAACGGATGTTCCA
CCGGTTCGTCTGGGCGCAGACCTATCTGCGCGGCCCCACGCACGCGTACG
AGGTCTTCAAGCGTTGCCTTCCCATGCCACGCGGCGGCGGCGGCGGAAAT
TTCGCAAGCGCCGCCACGCCGCACCACCCCCCTCCTCTTCCACCTGCTGC
GCTCGCTGACGTAGCCTCAGCCGCGGTCAACCTCGTCGACGCGTGGCCTG
AGCTCCCGGGCTTTTGCCCGTCCTTCCCTCACCATGTCCATGCTGCGGAC
CCGATCTTTCTCCGATACCTTCGTTCTTCCACTCGTGAGAGTTCTGATAT
CTCCTTCTCCAGCGCTACTTCGACGCCGGAGGAAGGAACCCAAACGGGGA
AGACTCCACCAACGGCGTCGGCGTCAACCGGGGCTGGGGTATCTTCTCCT
GGTCGTCCTCCGCAGCCGACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAAAACCCGGATTTTGCTGAGGCTTTCGAGCGAAAGTACCACATCC
GCACGGCCGCTGTCATGAAGAAGGTTCTACGGACGGCCACAGAGGCGTAC
AGCGACCGGGTCGGCCAGCAGGGGGGGGGGGCGACAAGGATCAATGCGAA
CAGAAAGCCCGGGGCCGGTTGTGGGGCAACGGCGGTAGGGAGAGGCGGAG
AGAGAGCCAGGATGTCTGCCGCCGCGCAAACGGTCCAGGTAGCGTTTCGG
CAACGGATGTTCCACCGGTTCGTCTGGGCGCAGACCTATCTGCGCGGCCC
CACGCACGCGTACGAGGTCTTCAAGCGTTGCCTTCCCATGCCACGCGGCG
GCGGCGGCGGAAATTTCGCAAGCGCCGCCACGCCGCACCACCCCCCTCCT
CTTCCACCTGCTGCGCTCGCTGACGTAGCCTCAGCCGCGGTCAACCTCGT
CGACGCGTGGCCTGAGCTCCCGGGCTTTTGCCCGTCCTTCCCTCACCATG
TCCATGCTGCGGACCCGATCTTTCTCCGATACCTTCGTTCTTCCACTCGT
GAGAGTTCTGATATCTCCTTCTCCAGCGCTACTTCGACGCCGGAGGAAGG
AACCCAAACGGGGAAGACTCCACCAACGGCGTCGGCGTCAACCGGGGCTG
GGGTATCTTCTCCTGGTCGTCCTCCGCAGCCGACGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAAACCCGGATTTTGCTGAGGCTTTCGAGCG
AAAGTACCACATCCGCACGGCCGCTGTC
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