mRNA_E-siliculosus-1a_F_contig14945.2875.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14945.2875.1
Unique NamemRNA_E-siliculosus-1a_F_contig14945.2875.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: A0A2A3XD60_9GAMM (META domain-containing protein n=1 Tax=Halomonas sp. JB37 TaxID=2024405 RepID=A0A2A3XD60_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 2.580e-33
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCTAAMDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +K  LA  WLT TLLITAGCTAAM+TQPPATMPNESLINTYWKL TLGDQ VVTRENVREAHLVLHQD
Sbjct:    1 MKHPLARYWLTGTLLITAGCTAAMNTQPPATMPNESLINTYWKLATLGDQSVVTRENVREAHLVLHQD 68          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: A0A2G2KTS8_HALSX (META domain-containing protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A2G2KTS8_HALSX)

HSP 1 Score: 86.3 bits (212), Expect = 9.160e-20
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 NNTLKRQLALSWLTSTLLITAGCTAA-MDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            N+ LKR+L      S LLITAGC++A MDT   A  PNE+LINTYWKLVTL   PVVT EN REAHLVLHQ+
Sbjct:    3 NHALKRRLPNYGFISALLITAGCSSATMDTHETAHHPNEALINTYWKLVTLDGAPVVTHENFREAHLVLHQE 74          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: A0A0C3IEL5_9GAMM (META domain-containing protein n=10 Tax=Halomonadaceae TaxID=28256 RepID=A0A0C3IEL5_9GAMM)

HSP 1 Score: 80.9 bits (198), Expect = 9.060e-18
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   49 STLLITAGCTAA-MDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            S LLITAGC++A MDT   A  PNE LINTYWKLVTL   PVVT EN REAHLVLHQ+
Sbjct:    6 SALLITAGCSSATMDTHETAHRPNEPLINTYWKLVTLDGAPVVTHENFREAHLVLHQE 63          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: A0A1J8P8J2_9GAMM (META domain-containing protein n=4 Tax=Halomonadaceae TaxID=28256 RepID=A0A1J8P8J2_9GAMM)

HSP 1 Score: 81.3 bits (199), Expect = 1.030e-17
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 IRNNTLKRQLALSWLTSTLLITAGC-TAAMDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +RN  LKR LA+S     LL+T+GC  AA D+    T P+ESLINTYWKLV L   PVVT E+ REAHLVLHQ+
Sbjct:   10 LRNRKLKRLLAISVFIGILLMTSGCIVAATDSHKYTTSPDESLINTYWKLVMLDGAPVVTHEDFREAHLVLHQE 83          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: UPI001CF4FE01 (META domain-containing protein n=1 Tax=Halomonas sp. SBBP1 TaxID=2599306 RepID=UPI001CF4FE01)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-17
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCTAAMDTQPPATM-PNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +KR+LAL      LLITAGC++A    P  T  P+E LINTYWKLVTL  +PVVT EN REAH+VLHQD
Sbjct:    1 MKRRLALYGFIGALLITAGCSSAPIDSPDGTYHPDEPLINTYWKLVTLDGEPVVTDENFREAHVVLHQD 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: UPI001F2ACC8E (META domain-containing protein n=1 Tax=Halomonas titanicae TaxID=664683 RepID=UPI001F2ACC8E)

HSP 1 Score: 79.7 bits (195), Expect = 2.960e-17
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCT-AAMDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +KR+LAL      LLITAGC+ AAMD+Q  A  P+E+LINTYWKLV+L   PVV   N REAH VLHQD
Sbjct:    1 MKRRLALYGFIGALLITAGCSSAAMDSQETAHHPDETLINTYWKLVSLDGAPVVVNGNFREAHFVLHQD 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: UPI001EEFF2D9 (META domain-containing protein n=1 Tax=Halomonas profundi TaxID=2852117 RepID=UPI001EEFF2D9)

HSP 1 Score: 79.0 bits (193), Expect = 5.930e-17
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCTAAM-DTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +KR LA S   S LLITAGCTAA  D       P++SLINTYWKLVTL D+ ++T+EN REAH VLHQ+
Sbjct:    1 MKRLLAFSICISALLITAGCTAASTDNAKSNERPDKSLINTYWKLVTLDDKQIITQENSREAHFVLHQE 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: UPI0017884C65 (META domain-containing protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=UPI0017884C65)

HSP 1 Score: 74.3 bits (181), Expect = 3.790e-15
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCT-AAMDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +KR LA     S LL+T GCT A+ D    +  P+ESLINTYWKLV L D+ ++T+EN REAH VLHQ+
Sbjct:    1 MKRLLAFPIFISALLLTTGCTTASTDNAKNSERPDESLINTYWKLVALDDKQIITQENSREAHFVLHQE 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: A0A265E0A7_9GAMM (META domain-containing protein n=1 Tax=Halomonas boliviensis LC1 TaxID=1072583 RepID=A0A265E0A7_9GAMM)

HSP 1 Score: 72.8 bits (177), Expect = 1.510e-14
Identity = 42/69 (60.87%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCT-AAMDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +KR LA+     TLLIT G T AAMD Q  A  P+E LINTYW+L  L    VVT EN REAHLVLHQD
Sbjct:    1 MKRLLAICVFIGTLLITTGYTLAAMDFQKSAASPDEPLINTYWQLAWLDGALVVTHENFREAHLVLHQD 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Match: A0A1A9R6C8_9GAMM (META domain-containing protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R6C8_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 3.390e-13
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   16 LKRQLALSWLTSTLLITAGCTA-AMDTQPPATMPNESLINTYWKLVTLGDQPVVTRENVREAHLVLHQD 219
            +KR LA+     TLLI  GCT  A   Q  +   +E L+NTYWKL  L   PVVT EN REAHLVLHQD
Sbjct:    1 MKRLLAICGFIGTLLIFVGCTVDATKAQGASATLDEPLVNTYWKLTKLNGAPVVTHENFREAHLVLHQD 69          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14945.2875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A3XD60_9GAMM2.580e-3386.76META domain-containing protein n=1 Tax=Halomonas s... [more]
A0A2G2KTS8_HALSX9.160e-2065.28META domain-containing protein n=2 Tax=Halomonas T... [more]
A0A0C3IEL5_9GAMM9.060e-1872.41META domain-containing protein n=10 Tax=Halomonada... [more]
A0A1J8P8J2_9GAMM1.030e-1759.46META domain-containing protein n=4 Tax=Halomonadac... [more]
UPI001CF4FE011.480e-1762.32META domain-containing protein n=1 Tax=Halomonas s... [more]
UPI001F2ACC8E2.960e-1762.32META domain-containing protein n=1 Tax=Halomonas t... [more]
UPI001EEFF2D95.930e-1760.87META domain-containing protein n=1 Tax=Halomonas p... [more]
UPI0017884C653.790e-1555.07META domain-containing protein n=2 Tax=unclassifie... [more]
A0A265E0A7_9GAMM1.510e-1460.87META domain-containing protein n=1 Tax=Halomonas b... [more]
A0A1A9R6C8_9GAMM3.390e-1355.07META domain-containing protein n=2 Tax=unclassifie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14945contigE-siliculosus-1a_F_contig14945:1..219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size219
Model size219
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.O
EggNOG OGs1N9XV@1224,1S4T0@1236,1XS8G@135619,COG3187@1,COG3187@2
EggNOG free text desc.META domain
KEGG koko:K03668,ko:K09914
Preferred namehslJ
Seed eggNOG ortholog1380358.JADJ01000031_gene4166
Seed ortholog evalue4.9e-10
Seed ortholog score70.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.2396283-CDS-E-siliculosus-1a_F_contig14945:0..2191622928006.2396283-CDS-E-siliculosus-1a_F_contig14945:0..219Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14945 1..219 -
1696318769.366112-CDS-E-siliculosus-1a_F_contig14945:0..2191696318769.366112-CDS-E-siliculosus-1a_F_contig14945:0..219Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14945 1..219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14945.2875.1prot_E-siliculosus-1a_F_contig14945.2875.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14945 1..219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14945.2875.1

>prot_E-siliculosus-1a_F_contig14945.2875.1 ID=prot_E-siliculosus-1a_F_contig14945.2875.1|Name=mRNA_E-siliculosus-1a_F_contig14945.2875.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
IRNNTLKRQLALSWLTSTLLITAGCTAAMDTQPPATMPNESLINTYWKLV
TLGDQPVVTRENVREAHLVLHQD
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mRNA from alignment at E-siliculosus-1a_F_contig14945:1..219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14945.2875.1 ID=mRNA_E-siliculosus-1a_F_contig14945.2875.1|Name=mRNA_E-siliculosus-1a_F_contig14945.2875.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=219bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14945:1..219- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATAAGGAATAACACGTTGAAACGCCAATTAGCACTTTCCTGGTTGACCAG CACGCTACTAATAACTGCAGGCTGCACAGCTGCGATGGATACCCAACCAC CTGCCACAATGCCTAACGAATCGTTGATCAATACATATTGGAAGCTTGTC ACGTTAGGCGACCAGCCTGTCGTGACGCGAGAGAATGTCCGGGAAGCCCA CCTGGTTCTTCACCAAGAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14945:1..219-

>mRNA_E-siliculosus-1a_F_contig14945.2875.1 ID=mRNA_E-siliculosus-1a_F_contig14945.2875.1|Name=mRNA_E-siliculosus-1a_F_contig14945.2875.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14945:1..219- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATAAGGAATAACACGTTGAAACGCCAATTAGCACTTTCCTGGTTGACCAG
CACGCTACTAATAACTGCAGGCTGCACAGCTGCGATGGATACCCAACCAC
CTGCCACAATGCCTAACGAATCGTTGATCAATACATATTGGAAGCTTGTC
ACGTTAGGCGACCAGCCTGTCGTGACGCGAGAGAATGTCCGGGAAGCCCA
CCTGGTTCTTCACCAAGATATAAGGAATAACACGTTGAAACGCCAATTAG
CACTTTCCTGGTTGACCAGCACGCTACTAATAACTGCAGGCTGCACAGCT
GCGATGGATACCCAACCACCTGCCACAATGCCTAACGAATCGTTGATCAA
TACATATTGGAAGCTTGTCACGTTAGGCGACCAGCCTGTCGTGACGCGAG
AGAATGTCCGGGAAGCCCACCTGGTTCTTCACCAAGAT
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