mRNA_E-siliculosus-1a_F_contig149.2855.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE) HSP 1 Score: 425 bits (1093), Expect = 1.250e-143 Identity = 318/511 (62.23%), Postives = 326/511 (63.80%), Query Frame = 1
Query: 4 RRSFNNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFALGETRQEERQQGAAGLQTAAAAGTGLRMARPTSSLSSSGTGRRVYSCGPGGXXXXXXXXXXXXXTLTPSLASSSYTPPGDSSNAEINPRAGFFATYPDGSAPNGHGSMGTFASSSPSLCAPWADHGGFYPADGFPGSEEAGGSGAGVSGGFXXXXXXXXXXXXX------------QNWAST-----------------------------------------------------------------------------------------------------------------------QQQ--------------------EDHMPGFSEGVWYHQQQGPQTLPQEGFGQVDDWLNSPYLLGIDEIGGGHDPDGAVECAARNAATDVDNLGIL 1083
RRSFNNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASAAPXXXXXXXXXXXXXXXXXXXXXXX ALGETRQ QGAAGLQTAAAAGTGLRMARPTSSLSSSGT R Y+CGP XXXXXXXXXXXX TL+PSLASSSYTPPGDSSNAEINPRAG+F YPDGS PN H +MGTFASSSPSLCAP A++GGF+PADGF G E+AG SGAGVSGGFXXXXXXXXXXXXX QNWAST QQ E HMPGFSE VWYHQQQGPQTL QEGFGQVDDWLNSPYLL DEIGGGHD DGAVE AARNAATDVDNLGIL
Sbjct: 2 RRSFNNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASAAPXXXXXXXXXXXXXXXXXXXXXXXDAIFV--ALGETRQ----QGAAGLQTAAAAGTGLRMARPTSSLSSSGTDRGAYACGPXXXXXXXXXXXXXXATLSPSLASSSYTPPGDSSNAEINPRAGYFVAYPDGSVPNSHEAMGTFASSSPSLCAPLANYGGFFPADGFTGPEQAGESGAGVSGGFXXXXXXXXXXXXXXXXXXXXXXXXXQNWASTVRGSECTDGSYQSHTSWCSAPQSPLSSPYIMSASSLGSVGPPPAAPAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATGGXXXXXXXXLNPLGGGKCGYGSTQQLLQLQLXXXXXXXXXXXXXXEHHMPGFSESVWYHQQQGPQTLRQEGFGQVDDWLNSPYLLREDEIGGGHDLDGAVEGAARNAATDVDNLGIL 506
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: D7G094_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G094_ECTSI) HSP 1 Score: 140 bits (352), Expect = 4.480e-38 Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1
Query: 877 MPGFSEGVWYHQQQGPQTLPQEGFGQVDDWLNSPYLLGIDEIGGGHDPDGAVECAARNAATDVDNLGIL 1083
MP FSEGVWYHQQQGPQTLPQEGFG VDDWLNSPYLLG DEIGG HDPDGAVECAARN+ATDVDNLGIL
Sbjct: 1 MPDFSEGVWYHQQQGPQTLPQEGFGHVDDWLNSPYLLGEDEIGGRHDPDGAVECAARNSATDVDNLGIL 69
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.820e-14 Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 16 NNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASA 249
N G+WT+EEH+AFL GL H N + P TRSA+Q+RTH QKYF K+++GE+FP +PY S + A ++ + A
Sbjct: 7 NKGKWTREEHEAFLSGLWQHESNSHALVP---TRSALQIRTHAQKYFDKIERGEKFPAQPYPSQYDAASGKSCIARGA 81
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: A0A6H5L149_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.870e-14 Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 16 NNGRWTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASA 249
N GRWT EEHDAFL+G+ +N W IA ++ TR+ +Q+RTH QKY+ KVDKGE FP+EPY S A ++ +SA A
Sbjct: 6 NKGRWTSEEHDAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAGKSSASAGA 84
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.430e-13 Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 25 RWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDK 171
RWTKEEHDAFL GL ++GK W +A VKTR+ VQ RTH QKYF+K+ K
Sbjct: 1 RWTKEEHDAFLSGLKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLSK 49
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: D7FXJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 9.850e-13 Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 FRRSFNNGRWTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEE 192
FR N GRWT EEH AFL+G+ +N W IA ++ TR+ +Q+RTH QKY+ KVDKGE FP+E
Sbjct: 6 FRIRRNKGRWTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 70
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 4.640e-12 Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 16 NNGRWTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASA 249
N GRWT EEH FL+G+ L ++ + +A ++ TR+ +QVRTH QKYF KVDKGE FP EPY S + +A + +A A
Sbjct: 6 NKGRWTHEEHAEFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNEPYPSQYDRAAGRAGVAAGA 84
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: D7G4K1_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K1_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 6.230e-12 Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 22 GRWTKEEHDAFLQGLVLHGKNW-DLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASAAP 255
GRWTK+EH FL GL GK+W ++ V +R+A Q+RTH QKYF KV++G+ FPE+PYES + + T S +P
Sbjct: 57 GRWTKKEHADFLVGLEACGKDWMEISCHFVFSRTATQIRTHAQKYFTKVNRGQSFPEQPYES--VPGKRNTCDDRSGSP 133
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: A0A6H5KVV5_9PHAE (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 7.520e-12 Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 16 NNGRWTKEEHDAFLQGLVLHGKN-WDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASA 249
N GRWT EEH FL+G+ L ++ + +A ++ TR+ +QVRTH QKYF KVDKGE FP EPY S + +A + +A A
Sbjct: 6 NKGRWTHEEHAVFLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTEPYPSQYDRAAGRAGVAAGA 84
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Match: A0A7S2UVK9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 8.460e-12 Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 16 NNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDK 171
++GRWT EEH+ FL+GL LHGK W IA ++KTR+ +Q+RTH QKYF+K++K
Sbjct: 53 SSGRWTAEEHEIFLRGLDLHGKGWKEIAKMIKTRTVIQIRTHAQKYFQKLEK 104 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig149.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig149.2855.1 >prot_E-siliculosus-1a_F_contig149.2855.1 ID=prot_E-siliculosus-1a_F_contig149.2855.1|Name=mRNA_E-siliculosus-1a_F_contig149.2855.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=362bp FRRSFNNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKback to top mRNA from alignment at E-siliculosus-1a_F_contig149:55768..58671- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig149.2855.1 ID=mRNA_E-siliculosus-1a_F_contig149.2855.1|Name=mRNA_E-siliculosus-1a_F_contig149.2855.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2904bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig149:55768..58671- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig149:55768..58671- >mRNA_E-siliculosus-1a_F_contig149.2855.1 ID=mRNA_E-siliculosus-1a_F_contig149.2855.1|Name=mRNA_E-siliculosus-1a_F_contig149.2855.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2172bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig149:55768..58671- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |