mRNA_E-siliculosus-1a_F_contig14885.2841.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 9.380e-10 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
GNY EA+PLY R+QAIR+K+LGPDHP VA LN+ AGLL
Sbjct: 206 GNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 2.330e-9 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
GNYD+A LY+R+ AIREK+LGPDHP VA SLN+ AGLL
Sbjct: 130 GNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLL 168
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: UPI0010816EB9 (tetratricopeptide repeat protein n=1 Tax=Candidatus Chloroploca sp. M50-1 TaxID=2528176 RepID=UPI0010816EB9) HSP 1 Score: 59.7 bits (143), Expect = 2.490e-9 Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGL 114
GNYD A PLY RA AIRE++LGP+HP A SLN+LAGL
Sbjct: 9 GNYDAARPLYERALAIRERVLGPEHPDTATSLNNLAGL 46
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 6.350e-9 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
G YD+AEPL R+Q IREK+LGP+HP VA SLN+ AGLL
Sbjct: 499 GKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLL 537
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 2.130e-8 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
G Y EAEPLY R+QAIREK+LG +HP+VA SLN A LL
Sbjct: 15 GKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLL 53
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5JSR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 2.220e-8 Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 7 YDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
YDEAEPLY R+QAIREK LGP HP VA SLN A LL
Sbjct: 2 YDEAEPLYERSQAIREKALGPKHPDVARSLNKRAWLL 38
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A3D2VY52_9GAMM (CHAT domain-containing protein (Fragment) n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VY52_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 7.740e-8 Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGL 114
G Y EAEPL+RRA A+REKMLGP+HP S+N+LA L
Sbjct: 6 GRYREAEPLFRRALAVREKMLGPEHPNTLTSINNLAFL 43
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: X0XF05_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XF05_9ZZZZ) HSP 1 Score: 54.7 bits (130), Expect = 1.100e-7 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLA 108
G+Y +AEPLY+RA AI EK LGP+HP VA SLN+LA
Sbjct: 9 GDYSKAEPLYKRALAIMEKALGPEHPDVATSLNNLA 44
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A3D2VX06_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VX06_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 1.340e-7 Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGL 114
G Y EAEPLYRRA A REK+LG +HP +S N+LAGL
Sbjct: 6 GRYGEAEPLYRRALAAREKVLGTEHPDTLSSANNLAGL 43
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: UPI001A9BC8CA (Tetratricopeptide repeat-containing protein n=2 Tax=Desulfonema magnum TaxID=45655 RepID=UPI001A9BC8CA) HSP 1 Score: 54.3 bits (129), Expect = 1.990e-7 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
G+Y+ AEPL+RRA IREK+LG DH A SLN+LAGLL
Sbjct: 7 GDYEGAEPLFRRALEIREKVLGADHSDTATSLNNLAGLL 45 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14885.2841.1 >prot_E-siliculosus-1a_F_contig14885.2841.1 ID=prot_E-siliculosus-1a_F_contig14885.2841.1|Name=mRNA_E-siliculosus-1a_F_contig14885.2841.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLLback to top mRNA from alignment at E-siliculosus-1a_F_contig14885:208..324+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14885.2841.1 ID=mRNA_E-siliculosus-1a_F_contig14885.2841.1|Name=mRNA_E-siliculosus-1a_F_contig14885.2841.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=117bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14885:208..324+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14885:208..324+ >mRNA_E-siliculosus-1a_F_contig14885.2841.1 ID=mRNA_E-siliculosus-1a_F_contig14885.2841.1|Name=mRNA_E-siliculosus-1a_F_contig14885.2841.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14885:208..324+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |