mRNA_E-siliculosus-1a_F_contig14885.2841.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14885.2841.1
Unique NamemRNA_E-siliculosus-1a_F_contig14885.2841.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 9.380e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
            GNY EA+PLY R+QAIR+K+LGPDHP VA  LN+ AGLL
Sbjct:  206 GNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.330e-9
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
            GNYD+A  LY+R+ AIREK+LGPDHP VA SLN+ AGLL
Sbjct:  130 GNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLL 168          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: UPI0010816EB9 (tetratricopeptide repeat protein n=1 Tax=Candidatus Chloroploca sp. M50-1 TaxID=2528176 RepID=UPI0010816EB9)

HSP 1 Score: 59.7 bits (143), Expect = 2.490e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGL 114
            GNYD A PLY RA AIRE++LGP+HP  A SLN+LAGL
Sbjct:    9 GNYDAARPLYERALAIRERVLGPEHPDTATSLNNLAGL 46          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.350e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
            G YD+AEPL  R+Q IREK+LGP+HP VA SLN+ AGLL
Sbjct:  499 GKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLL 537          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-8
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
            G Y EAEPLY R+QAIREK+LG +HP+VA SLN  A LL
Sbjct:   15 GKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLL 53          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A6H5JSR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.220e-8
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    7 YDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
            YDEAEPLY R+QAIREK LGP HP VA SLN  A LL
Sbjct:    2 YDEAEPLYERSQAIREKALGPKHPDVARSLNKRAWLL 38          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A3D2VY52_9GAMM (CHAT domain-containing protein (Fragment) n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VY52_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 7.740e-8
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGL 114
            G Y EAEPL+RRA A+REKMLGP+HP    S+N+LA L
Sbjct:    6 GRYREAEPLFRRALAVREKMLGPEHPNTLTSINNLAFL 43          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: X0XF05_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XF05_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 1.100e-7
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLA 108
            G+Y +AEPLY+RA AI EK LGP+HP VA SLN+LA
Sbjct:    9 GDYSKAEPLYKRALAIMEKALGPEHPDVATSLNNLA 44          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: A0A3D2VX06_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VX06_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.340e-7
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGL 114
            G Y EAEPLYRRA A REK+LG +HP   +S N+LAGL
Sbjct:    6 GRYGEAEPLYRRALAAREKVLGTEHPDTLSSANNLAGL 43          
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Match: UPI001A9BC8CA (Tetratricopeptide repeat-containing protein n=2 Tax=Desulfonema magnum TaxID=45655 RepID=UPI001A9BC8CA)

HSP 1 Score: 54.3 bits (129), Expect = 1.990e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL 117
            G+Y+ AEPL+RRA  IREK+LG DH   A SLN+LAGLL
Sbjct:    7 GDYEGAEPLFRRALEIREKVLGADHSDTATSLNNLAGLL 45          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14885.2841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5H9_9PHAE9.380e-1071.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM2_9PHAE2.330e-971.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0010816EB92.490e-971.05tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A6H5KIY6_9PHAE6.350e-969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK1_9PHAE2.130e-869.23Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JSR2_9PHAE2.220e-875.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3D2VY52_9GAMM7.740e-865.79CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
X0XF05_9ZZZZ1.100e-769.44Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3D2VX06_9GAMM1.340e-765.79Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
UPI001A9BC8CA1.990e-766.67Tetratricopeptide repeat-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14885contigE-siliculosus-1a_F_contig14885:208..324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size117
Model size117
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928000.1311312-CDS-E-siliculosus-1a_F_contig14885:207..3241622928000.1311312-CDS-E-siliculosus-1a_F_contig14885:207..324Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14885 208..324 +
1696318767.2915065-CDS-E-siliculosus-1a_F_contig14885:207..3241696318767.2915065-CDS-E-siliculosus-1a_F_contig14885:207..324Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14885 208..324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14885.2841.1prot_E-siliculosus-1a_F_contig14885.2841.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14885 208..324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14885.2841.1

>prot_E-siliculosus-1a_F_contig14885.2841.1 ID=prot_E-siliculosus-1a_F_contig14885.2841.1|Name=mRNA_E-siliculosus-1a_F_contig14885.2841.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp
GNYDEAEPLYRRAQAIREKMLGPDHPKVAASLNSLAGLL
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mRNA from alignment at E-siliculosus-1a_F_contig14885:208..324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14885.2841.1 ID=mRNA_E-siliculosus-1a_F_contig14885.2841.1|Name=mRNA_E-siliculosus-1a_F_contig14885.2841.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=117bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14885:208..324+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAACTACGATGAGGCGGAGCCGCTCTATAGGCGGGCACAGGCCATCCG AGAGAAGATGCTGGGGCCCGACCATCCAAAAGTGGCTGCATCGCTCAACA GCCTGGCGGGATTGCTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14885:208..324+

>mRNA_E-siliculosus-1a_F_contig14885.2841.1 ID=mRNA_E-siliculosus-1a_F_contig14885.2841.1|Name=mRNA_E-siliculosus-1a_F_contig14885.2841.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14885:208..324+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAACTACGATGAGGCGGAGCCGCTCTATAGGCGGGCACAGGCCATCCG
AGAGAAGATGCTGGGGCCCGACCATCCAAAAGTGGCTGCATCGCTCAACA
GCCTGGCGGGATTGCTAGGCAACTACGATGAGGCGGAGCCGCTCTATAGG
CGGGCACAGGCCATCCGAGAGAAGATGCTGGGGCCCGACCATCCAAAAGT
GGCTGCATCGCTCAACAGCCTGGCGGGATTGCTA
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