mRNA_E-siliculosus-1a_F_contig1483.2816.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1483.2816.1
Unique NamemRNA_E-siliculosus-1a_F_contig1483.2816.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1483.2816.1 vs. uniprot
Match: A0A6H5JH87_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH87_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 6.930e-58
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 1 
Query:    1 EEAEGWERPSLSQRLARGVPVLGATGLWQLLSRLDGPPSLLDPLAAVLSWFFLELIMVSVPTGVWNRWDMGNPGRAASXXXXXXXXXXXXXXXXXXXXXXRLMLGSSREDRDGESKERAEPTTGAATSPLRWDATVQ 411
            EE +GWERPSLSQRLARGVPVLGATGLWQLLSRLDGPPSLLDPLAAVLSWFFLELIMVSVP+GVWN+WDMGNPGRAA XXXXXXXXXXXXXXXXXXX      LGSSRED  GESKERA+PTTGAATSPLRWDATVQ
Sbjct:   98 EEEKGWERPSLSQRLARGVPVLGATGLWQLLSRLDGPPSLLDPLAAVLSWFFLELIMVSVPSGVWNKWDMGNPGRAAXXXXXXXXXXXXXXXXXXXX----XXLGSSREDEQGESKERAKPTTGAATSPLRWDATVQ 230
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1483.2816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH87_9PHAE6.930e-5889.78Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1483contigE-siliculosus-1a_F_contig1483:6586..7352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size414
Model size416
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.9520235-CDS-E-siliculosus-1a_F_contig1483:6585..69221622927994.9520235-CDS-E-siliculosus-1a_F_contig1483:6585..6922Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 6586..6922 -
1696318765.849289-CDS-E-siliculosus-1a_F_contig1483:6585..69221696318765.849289-CDS-E-siliculosus-1a_F_contig1483:6585..6922Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 6586..6922 -
1622927994.9668577-CDS-E-siliculosus-1a_F_contig1483:7275..73521622927994.9668577-CDS-E-siliculosus-1a_F_contig1483:7275..7352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 7276..7352 -
1696318765.8582094-CDS-E-siliculosus-1a_F_contig1483:7275..73521696318765.8582094-CDS-E-siliculosus-1a_F_contig1483:7275..7352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1483 7276..7352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1483.2816.1prot_E-siliculosus-1a_F_contig1483.2816.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1483 6586..7352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1483.2816.1

>prot_E-siliculosus-1a_F_contig1483.2816.1 ID=prot_E-siliculosus-1a_F_contig1483.2816.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2816.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=138bp
EEAEGWERPSLSQRLARGVPVLGATGLWQLLSRLDGPPSLLDPLAAVLSW
FFLELIMVSVPTGVWNRWDMGNPGRAASAAAAAAAAAAAAAAPETPPPPP
RLMLGSSREDRDGESKERAEPTTGAATSPLRWDATVQG
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mRNA from alignment at E-siliculosus-1a_F_contig1483:6586..7352-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1483.2816.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2816.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2816.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=767bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:6586..7352- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGAGGCGGAGGGGTGGGAGAGGCCATCGCTGTCGCAACGGCTCGCGAG
AGGCGTGCCGGTGCTGGGCGCCACAGGGTAGGTTTTTCTTGTCGCTCGTG
TGTGTCTCGTGTGTGCGTGTGTGTGTGATCGTGTGGATTGCCCCGCAACA
AGACAGACGGTGTATCGCTTTCGCCCCCAACCCTGCTGCTCTGGCTGTTG
CTGCTGCGATGTAGTGTTCTGGGGGTCACGTGTGTGTCTGGCGGGGGCAT
AAGATGCACCCGCCATCGTGCCGAACTCTGTCCCTTGATATGTGCGAAGT
TCTTGTATTTCGCCTTCCCTGCCTGCCTGCGTGTTTGTCGCTCATGTCCT
CTGCCCGGATGCTTTGGTCACCCCTGCCTCTGTACGCTCCTTCCCCCTGC
GGACCTCCTCGCTACCCGCCCCGCTTGCAGGCTGTGGCAGCTGCTGAGTA
GGCTCGACGGCCCCCCGTCTCTGCTCGACCCTCTCGCCGCCGTCCTGTCG
TGGTTCTTTCTGGAGCTGATCATGGTTTCCGTCCCGACCGGGGTGTGGAA
CAGGTGGGACATGGGAAACCCCGGGAGGGCTGCTTCTGCTGCTGCTGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGCGCCGGAAACGCCCCCGCCACCG
CCGCGGCTGATGCTGGGCTCTTCGCGAGAAGACAGAGATGGGGAGAGCAA
AGAGAGAGCGGAGCCTACGACGGGCGCGGCGACATCTCCGCTCCGGTGGG
ATGCCACGGTACAAGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1483:6586..7352-

>mRNA_E-siliculosus-1a_F_contig1483.2816.1 ID=mRNA_E-siliculosus-1a_F_contig1483.2816.1|Name=mRNA_E-siliculosus-1a_F_contig1483.2816.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1483:6586..7352- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGAGGCGGAGGGGTGGGAGAGGCCATCGCTGTCGCAACGGCTCGCGAG
AGGCGTGCCGGTGCTGGGCGCCACAGGGAGGAGGCGGAGGGGTGGGAGAG
GCCATCGCTGTCGCAACGGCTCGCGAGAGGCGTGCCGGTGCTGGGCGCCA
CAGGGCTGTGGCAGCTGCTGAGTAGGCTCGACGGCCCCCCGTCTCTGCTC
GACCCTCTCGCCGCCGTCCTGTCGTGGTTCTTTCTGGAGCTGATCATGGT
TTCCGTCCCGACCGGGGTGTGGAACAGGTGGGACATGGGAAACCCCGGGA
GGGCTGCTTCTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCAGCG
GCGCCGGAAACGCCCCCGCCACCGCCGCGGCTGATGCTGGGCTCTTCGCG
AGAAGACAGAGATGGGGAGAGCAAAGAGAGAGCGGAGCCTACGACGGGCG
CGGCGACATCTCCGCTCCGGTGGGATGCCACGGTACAAGGAGCTGTGGCA
GCTGCTGAGTAGGCTCGACGGCCCCCCGTCTCTGCTCGACCCTCTCGCCG
CCGTCCTGTCGTGGTTCTTTCTGGAGCTGATCATGGTTTCCGTCCCGACC
GGGGTGTGGAACAGGTGGGACATGGGAAACCCCGGGAGGGCTGCTTCTGC
TGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGCCGGAAACGC
CCCCGCCACCGCCGCGGCTGATGCTGGGCTCTTCGCGAGAAGACAGAGAT
GGGGAGAGCAAAGAGAGAGCGGAGCCTACGACGGGCGCGGCGACATCTCC
GCTCCGGTGGGATGCCACGGTACAAGGA
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