mRNA_E-siliculosus-1a_F_contig14827.2814.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE) HSP 1 Score: 111 bits (278), Expect = 2.160e-26 Identity = 68/133 (51.13%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 1 FQGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEIQ 399
FQGKYEEA+PLY R+ I EK LGP+HP +A LNN+ KMFLR+L FDSQ EIRLYHA AIKEKVLGPDHPSLATTLNNRAGLLE Q
Sbjct: 6 FQGKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKAATGVSCGVKLISQLLGGVVE--------KMFLRDLIFDSQTEIRLYHA-------------------AIKEKVLGPDHPSLATTLNNRAGLLEAQ 111
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 4.020e-25 Identity = 99/186 (53.23%), Postives = 110/186 (59.14%), Query Frame = 1
Query: 1 FQGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRG-----------------------------------------------------GGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEIQ 399
FQGKYEEA PLYERS AIREKVLGP+HPDVAQSLNNR XXXXXXXXXXXXXXXXXXXXXXXXX + Q ++ LY AV+C++GKY++AEPLYERCQAI EK LGP+HP +ATTLNNRAGLLE Q
Sbjct: 797 FQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAXATPSTVPQLKLLLYCAVNCIKGKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.720e-24 Identity = 85/135 (62.96%), Postives = 98/135 (72.59%), Query Frame = 1
Query: 1 FQGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEIQVR 405
FQGKY++A PLY+RS AI EKV GP+HPDVAQSLNNR XXXXXXXXXXXXXXXXXXXX L + ++AE+ QGKY +AEPL ER Q I+EKVLGP+HP +A +LNNRAGLLE QVR
Sbjct: 415 FQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAE-LLRAQXXXXXXXXXXXXXXXXXXXXXXXXLESQLLSNRAELLR------AQGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQVR 542
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.750e-22 Identity = 60/117 (51.28%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 49 AIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEIQ 399
AIREKVLGPEHPDVA SLNNR G + + L DS HC+QGKYSEAEPLY+RCQA+K K LGP+HPSLA TLNNRA LL Q
Sbjct: 136 AIREKVLGPEHPDVAASLNNRAG------------------LLRKCFSTIPFTIFTLKHDSS------RYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 5.250e-19 Identity = 88/161 (54.66%), Postives = 101/161 (62.73%), Query Frame = 1
Query: 1 FQGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGG--------GXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQA---EIRLYHAVHCM------------------QGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEI 396
FQGKYEEAEPLY S AI EKV GP+H +VA+ LNN G XXXXXXXXXXXXXXXXXXXXXXXXX +SQA + + C+ QG Y+EA+PLYER QAI++KVLGPDHP +AT LNNRAGLL+I
Sbjct: 86 FQGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLLSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQALNKRVGVEGKCLCLFATSYRPHFVWLNYEYICQGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLKI 246
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 4.700e-18 Identity = 62/145 (42.76%), Postives = 73/145 (50.34%), Query Frame = 1
Query: 4 QGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHC-----------MQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEIQVR 405
QGKY+EA L ERS AIREK LGP+HPDVAQSLNN L+ +R + L++ +H QG Y EA LYER AI+EK LGPDHP +A +LNN A LLE QVR
Sbjct: 355 QGKYDEAGKLCERSLAIREKALGPDHPDVAQSLNN-------------------------WALLLESQVRAIRIPGSF---LWYPIHSGVLNNRALLLKAQGNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLEAQVR 471
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 7.490e-17 Identity = 57/126 (45.24%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 4 QGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRA 381
QGKY EAEPL+ERSQAIREKVL PE+P+VA L R KM+L L+ + QGK EAEPL+ER QAI+EKVLGP++P +AT L NRA
Sbjct: 1809 QGKYAEAEPLHERSQAIREKVLDPENPEVATVLKTRA-------------------------CSAKMYLPWLSVRTAC-----------QGKGEEAEPLHERSQAIREKVLGPENPEVATVLKNRA 1898
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.790e-16 Identity = 55/131 (41.98%), Postives = 65/131 (49.62%), Query Frame = 1
Query: 7 GKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLLEIQ 399
GK EA PL+ +S IREK LGPEHPDVA+SLNN G SQA + + V + + +AEPLYER AI EKV GPDHP +AT LNN A L E+Q
Sbjct: 64 GKCVEAVPLHRQSLGIREKTLGPEHPDVAESLNNLAG----------------------------------VLRSQASV---NPVFEILRNFQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAALYEVQ 157
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 5.800e-15 Identity = 78/127 (61.42%), Postives = 80/127 (62.99%), Query Frame = 1
Query: 7 GKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFLRNLTFDSQAEIRLYHAVH------------CMQGKYSEAEPLYERCQAIKEKVLGPDHP 351
GKY +AEPL ERS AIREKVLGPEHPDVAQSLNNR G XXXXXXXXXXXXXXXXXXXXXXXXX QGKY EAEPLY+R AI EKV GPDHP
Sbjct: 404 GKYADAEPLCERSPAIREKVLGPEHPDVAQSLNNRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPVSKHDPVTLPTAFQGKYEEAEPLYKRSLAIDEKVYGPDHP 530
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 8.500e-15 Identity = 83/153 (54.25%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 4 QGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXLKMFL---------------RNLTFDSQAE---IRL------YHAVHCMQGKYSEAEPLYERCQAIKEKVLGPDHPSLATTLNNRAGLL 390
QGK EAE LY+RS AI EKV GP HP+VA+ LNN XXXXXXXXXXXXXXXXXXXXXXXXX +N+ E IRL +H +H +QG Y +A LY+R AI+EKVLGPDHP++A +LNNRAGLL
Sbjct: 16 QGKLAEAESLYKRSLAIDEKVYGPHHPEVAKDLNNWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQNVPPGGVVEHSFIRLPYSAHSFHPLHHIQGNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLL 168 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14827.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14827.2814.1 >prot_E-siliculosus-1a_F_contig14827.2814.1 ID=prot_E-siliculosus-1a_F_contig14827.2814.1|Name=mRNA_E-siliculosus-1a_F_contig14827.2814.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp FQGKYEEAEPLYERSQAIREKVLGPEHPDVAQSLNNRGGGKYAEAEPLYAback to top mRNA from alignment at E-siliculosus-1a_F_contig14827:16..971+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14827.2814.1 ID=mRNA_E-siliculosus-1a_F_contig14827.2814.1|Name=mRNA_E-siliculosus-1a_F_contig14827.2814.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14827:16..971+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14827:16..971+ >mRNA_E-siliculosus-1a_F_contig14827.2814.1 ID=mRNA_E-siliculosus-1a_F_contig14827.2814.1|Name=mRNA_E-siliculosus-1a_F_contig14827.2814.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14827:16..971+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |