mRNA_E-siliculosus-1a_F_contig14759.2776.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14759.2776.1
Unique NamemRNA_E-siliculosus-1a_F_contig14759.2776.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14759.2776.1 vs. uniprot
Match: A0A6H5KX62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX62_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 9.940e-69
Identity = 124/157 (78.98%), Postives = 134/157 (85.35%), Query Frame = 2 
Query:    2 DNDTCGRTQTNSGKRSKRDGGGPRPAPSGQQQDIEKPKVFLSRAATKSRKCIRGIEMRTNNNGKNNSAGERSLNDSVADEFGLKHDREDDTFSYTSSAKTQFSVSVAGGGGSNGLGLVRDSSDESDDDDLGEASRAIANPIFGDTSRAVGRQPKYKR 472
            DNDTCGRTQ NSGKRSKRDG  PRPAP GQQ +  +PK+F S AA+KSRKCIRGIEM+TN NGK+N A ERSLNDSV  +FGLK+DREDDTFSYTSSAKT FSV VA G GSNGL +VR SSDESDDDDLGE SRAIANPIFGD +RAVGRQPK KR
Sbjct:  420 DNDTCGRTQKNSGKRSKRDGVRPRPAPRGQQHNTGRPKLFFSGAASKSRKCIRGIEMQTNTNGKSNRADERSLNDSVTVKFGLKNDREDDTFSYTSSAKTHFSVRVADGEGSNGLAIVRASSDESDDDDLGEVSRAIANPIFGDMTRAVGRQPKNKR 576
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14759.2776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX62_9PHAE9.940e-6978.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14759contigE-siliculosus-1a_F_contig14759:319..807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size306
Model size489
Exons1
Ec32 orthologEc-08_005310.2
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14759.2776.1prot_E-siliculosus-1a_F_contig14759.2776.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14759 488..793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.1092765-UTR-E-siliculosus-1a_F_contig14759:318..4871622927985.1092765-UTR-E-siliculosus-1a_F_contig14759:318..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14759 319..487 +
1696318763.3029914-UTR-E-siliculosus-1a_F_contig14759:318..4871696318763.3029914-UTR-E-siliculosus-1a_F_contig14759:318..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14759 319..487 +
1622927985.1307428-UTR-E-siliculosus-1a_F_contig14759:793..8071622927985.1307428-UTR-E-siliculosus-1a_F_contig14759:793..807Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14759 794..807 +
1696318763.3224578-UTR-E-siliculosus-1a_F_contig14759:793..8071696318763.3224578-UTR-E-siliculosus-1a_F_contig14759:793..807Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14759 794..807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.1202621-CDS-E-siliculosus-1a_F_contig14759:487..7931622927985.1202621-CDS-E-siliculosus-1a_F_contig14759:487..793Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14759 488..793 +
1696318763.3129163-CDS-E-siliculosus-1a_F_contig14759:487..7931696318763.3129163-CDS-E-siliculosus-1a_F_contig14759:487..793Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14759 488..793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14759.2776.1

>prot_E-siliculosus-1a_F_contig14759.2776.1 ID=prot_E-siliculosus-1a_F_contig14759.2776.1|Name=mRNA_E-siliculosus-1a_F_contig14759.2776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
MRTNNNGKNNSAGERSLNDSVADEFGLKHDREDDTFSYTSSAKTQFSVSV
AGGGGSNGLGLVRDSSDESDDDDLGEASRAIANPIFGDTSRAVGRQPKYK
R*
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mRNA from alignment at E-siliculosus-1a_F_contig14759:319..807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14759.2776.1 ID=mRNA_E-siliculosus-1a_F_contig14759.2776.1|Name=mRNA_E-siliculosus-1a_F_contig14759.2776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=489bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14759:319..807+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGATAATGACACCTGTGGTCGCACCCAGACAAACTCCGGCAAGCGTTCCA
AGAGGGATGGGGGAGGGCCACGCCCCGCCCCAAGCGGGCAGCAACAAGAT
ATCGAAAAGCCCAAGGTATTCTTGAGCAGGGCAGCGACCAAATCCAGGAA
ATGCATACGTGGTATCGAGATGCGAACGAACAACAACGGCAAAAACAACA
GCGCAGGCGAGAGGTCGCTCAACGACAGCGTTGCGGACGAGTTCGGTCTT
AAGCATGACAGGGAAGACGACACATTCAGCTACACATCTTCCGCCAAGAC
ACAGTTCTCCGTCAGCGTCGCCGGCGGCGGGGGAAGCAATGGTTTGGGTC
TCGTCCGAGACTCCAGCGATGAGAGCGACGATGACGACCTGGGGGAGGCG
TCTCGTGCTATCGCCAACCCTATCTTCGGGGACACGTCGAGGGCTGTGGG
TCGCCAACCGAAATATAAACGGTAATTAGTTGGTCCGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14759:319..807+

>mRNA_E-siliculosus-1a_F_contig14759.2776.1 ID=mRNA_E-siliculosus-1a_F_contig14759.2776.1|Name=mRNA_E-siliculosus-1a_F_contig14759.2776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14759:319..807+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGAACGAACAACAACGGCAAAAACAACAGCGCAGGCGAGAGGTCGCT
CAACGACAGCGTTGCGGACGAGTTCGGTCTTAAGCATGACAGGGAAGACG
ACACATTCAGCTACACATCTTCCGCCAAGACACAGTTCTCCGTCAGCGTC
GCCGGCGGCGGGGGAAGCAATGGTTTGGGTCTCGTCCGAGACTCCAGCGA
TGAGAGCGACGATGACGACCTGGGGGAGGCGTCTCGTGCTATCGCCAACC
CTATCTTCGGGGACACGTCGAGGGCTGTGGGTCGCCAACCGAAATATAAA
CGGTAAATGCGAACGAACAACAACGGCAAAAACAACAGCGCAGGCGAGAG
GTCGCTCAACGACAGCGTTGCGGACGAGTTCGGTCTTAAGCATGACAGGG
AAGACGACACATTCAGCTACACATCTTCCGCCAAGACACAGTTCTCCGTC
AGCGTCGCCGGCGGCGGGGGAAGCAATGGTTTGGGTCTCGTCCGAGACTC
CAGCGATGAGAGCGACGATGACGACCTGGGGGAGGCGTCTCGTGCTATCG
CCAACCCTATCTTCGGGGACACGTCGAGGGCTGTGGGTCGCCAACCGAAA
TATAAACGGTAA
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