mRNA_E-siliculosus-1a_F_contig147.2756.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig147.2756.1
Unique NamemRNA_E-siliculosus-1a_F_contig147.2756.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig147.2756.1 vs. uniprot
Match: D8LFU2_ECTSI (Sec23_helical domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFU2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.290e-45
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    4 SWTEPSSAVGLSEVMSLEELLCPIGGNRELISANVRGLRGACRDGGAAATGRAGTRVTGLAVKLLLDLLLGASPGPAGAGATSPAGGGRDAKD 282
            SWTEPSSAVGLSEVMSLEELLCPIGGNRELISANVRGLRGACRDGGAAA GRAGTRVTGLAVKLLL+LLLGA+PGPAGAGATS AGGGRDA+D
Sbjct:  148 SWTEPSSAVGLSEVMSLEELLCPIGGNRELISANVRGLRGACRDGGAAAAGRAGTRVTGLAVKLLLNLLLGAAPGPAGAGATSTAGGGRDARD 240
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig147.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFU2_ECTSI1.290e-4594.62Sec23_helical domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig147contigE-siliculosus-1a_F_contig147:76341..77642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size282
Model size283
Exons3
Hectar predicted targeting categoryother localisation
Seed eggNOG ortholog2880.D8LFU2
BRITEko00000,ko00001,ko00002,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
Ec32 orthologEc-01_000930.2
Ec32 ortholog descriptionvon Willebrand factor, type A
EggNOG OGsCOG5028@1,KOG1985@2759
EggNOG free text desc.ER to Golgi vesicle-mediated transport
KEGG ModuleM00404
KEGG Pathwayko04141,map04141
KEGG koko:K14007
Seed ortholog evalue6.4e-39
Seed ortholog score166.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig147.2756.1prot_E-siliculosus-1a_F_contig147.2756.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig147 76341..77642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.6293788-CDS-E-siliculosus-1a_F_contig147:76340..763611622927981.6293788-CDS-E-siliculosus-1a_F_contig147:76340..76361Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 76341..76361 +
1696318761.8980546-CDS-E-siliculosus-1a_F_contig147:76340..763611696318761.8980546-CDS-E-siliculosus-1a_F_contig147:76340..76361Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 76341..76361 +
1622927981.643661-CDS-E-siliculosus-1a_F_contig147:77059..771921622927981.643661-CDS-E-siliculosus-1a_F_contig147:77059..77192Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 77060..77192 +
1696318761.9073918-CDS-E-siliculosus-1a_F_contig147:77059..771921696318761.9073918-CDS-E-siliculosus-1a_F_contig147:77059..77192Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 77060..77192 +
1622927981.6584086-CDS-E-siliculosus-1a_F_contig147:77514..776421622927981.6584086-CDS-E-siliculosus-1a_F_contig147:77514..77642Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 77515..77642 +
1696318761.9150288-CDS-E-siliculosus-1a_F_contig147:77514..776421696318761.9150288-CDS-E-siliculosus-1a_F_contig147:77514..77642Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 77515..77642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig147.2756.1

>prot_E-siliculosus-1a_F_contig147.2756.1 ID=prot_E-siliculosus-1a_F_contig147.2756.1|Name=mRNA_E-siliculosus-1a_F_contig147.2756.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=94bp
GSWTEPSSAVGLSEVMSLEELLCPIGGNRELISANVRGLRGACRDGGAAA
TGRAGTRVTGLAVKLLLDLLLGASPGPAGAGATSPAGGGRDAKD
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mRNA from alignment at E-siliculosus-1a_F_contig147:76341..77642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig147.2756.1 ID=mRNA_E-siliculosus-1a_F_contig147.2756.1|Name=mRNA_E-siliculosus-1a_F_contig147.2756.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1302bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:76341..77642+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGCTGGACCGAGCCATCGGTGATCCTTTATTTGGGTGGACACGCGAA
GATTGACGGGTGTTTTTTTTTGGGTCAGGGGGGGCGGTGGATTAGGCGAC
GTACGTCTAGGTGCTCTTCCCGCATGAGTAGGCCGGTGCTCTTGTCGGTT
GCGGGCGTCGCGCGGGTGTTGTAGCAGGCGTCGCACCTCGACAACATTGG
TGTGGCGTTATTTGCTTGAGGAGGCATGCGCAATGGAGAATGCGTCATGA
GAATCTGTGGTTGGTTTCCTCAGGCGGTGCTACGGTTTGGGTTTTGTTTG
GTTTAGCTCCTCTTGCGATCGCCGGCTCATTTGTTTTGTACCTCGTGAGC
TCCACGTTACTCCGTTAGTTTCGCTCCAGGGAAAACATAGCCAGGGTCAT
CTAACCTTTCCCGCCCCATTCCCCGCCAGCCTGTGTCTCCACCACCTCCT
ACCCCCGACACGATACCTCAACACGCGCCTTCGCAGCGAAAGTCGTTTTC
TGAATACCCCCCAATGGATGAACAACTAAGGCATGCCAAAAGTAAATACG
CCCCCGCGCTTGTCCGTGAGAACCCGGCGTGCTCCGTCCCGGCGTTGTAG
GGATGCGAGGTCAATTGTCCAACGACAACGGAATACACGGCTATGGGTAT
GAGTACAACCCCGCGCGCGCGCTTGCTCTTTGCAATGCAACCATCTCGGC
GTGGGGGGTGTTTGTTCAGAGTGCCGTTGGTCTGTCGGAGGTGATGTCGC
TGGAGGAGCTCTTGTGCCCAATCGGCGGGAACCGCGAGCTGATCTCGGCG
AACGTCCGGGGGCTGAGAGGAGCGTGCCGTGACGGCGGTGCTGCGGCCAC
TGGTAAGGACCGGAGACTCTTTTTTCGCACGAAAACCACACTCGCTGGAC
CGATTTTCAAAGCTCGATTTCCCCCTACTGTATTAGAGCTCTTTAGAATA
CGAGTACTTTGAAACTGCGAGCGACGGTTTCAAAAGTGTGTACGGGGGAA
AGCGACTGTGGAACCGGTGGTATTTCCACCCTCACGTCTTCTTGCACACC
GAATTGAAATCAACCCGCCCACGTGACATGAAGCCTCTCCCGGTACGGTA
TCCACCGTACAAACACCGCCCCCCCCCATAACACACAAGCGAACGTCCCC
CTCCTGTACCCCCCCCCTTCCCAGGCCGGGCGGGAACCCGAGTGACCGGG
CTAGCCGTCAAGCTCCTGCTAGACCTCCTGCTCGGCGCCTCGCCCGGGCC
TGCAGGGGCAGGCGCGACCTCTCCCGCCGGGGGGGGGCGCGACGCCAAGG
AC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig147:76341..77642+

>mRNA_E-siliculosus-1a_F_contig147.2756.1 ID=mRNA_E-siliculosus-1a_F_contig147.2756.1|Name=mRNA_E-siliculosus-1a_F_contig147.2756.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:76341..77642+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGCTGGACCGAGCCATCGGGGAGCTGGACCGAGCCATCGAGTGCCGT
TGGTCTGTCGGAGGTGATGTCGCTGGAGGAGCTCTTGTGCCCAATCGGCG
GGAACCGCGAGCTGATCTCGGCGAACGTCCGGGGGCTGAGAGGAGCGTGC
CGTGACGGCGGTGCTGCGGCCACTGAGTGCCGTTGGTCTGTCGGAGGTGA
TGTCGCTGGAGGAGCTCTTGTGCCCAATCGGCGGGAACCGCGAGCTGATC
TCGGCGAACGTCCGGGGGCTGAGAGGAGCGTGCCGTGACGGCGGTGCTGC
GGCCACTGGCCGGGCGGGAACCCGAGTGACCGGGCTAGCCGTCAAGCTCC
TGCTAGACCTCCTGCTCGGCGCCTCGCCCGGGCCTGCAGGGGCAGGCGCG
ACCTCTCCCGCCGGGGGGGGGCGCGACGCCAAGGACGCCGGGCGGGAACC
CGAGTGACCGGGCTAGCCGTCAAGCTCCTGCTAGACCTCCTGCTCGGCGC
CTCGCCCGGGCCTGCAGGGGCAGGCGCGACCTCTCCCGCCGGGGGGGGGC
GCGACGCCAAGGAC
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