mRNA_E-siliculosus-1a_F_contig147.2747.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig147.2747.1
Unique NamemRNA_E-siliculosus-1a_F_contig147.2747.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: D7FS75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS75_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 3.490e-134
Identity = 225/234 (96.15%), Postives = 231/234 (98.72%), Query Frame = 1 
Query:   94 MKVAALALVATSTASAAQQQSCFVPSVGGGLRPSARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADAKANKWKWQTEKSSFDPLVAWKKMKAEGKIDEVYDEDENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKEETAEAAPKSAAKKGAKGKKPAPATEAKPKKTGWW 795
            MKVAALALVATSTASAAQQQSCFVPSVGGGLRPS++TTSS S+QMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKS+VNEKRAQADAKANKWKWQTEKSSFDPLVAWKKMK+EGKIDEVY+E ENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKK EETAEAAPKSAAKKGAKGKKPAPATEAKPKKTGWW
Sbjct:    1 MKVAALALVATSTASAAQQQSCFVPSVGGGLRPSSKTTSS-SMQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSKVNEKRAQADAKANKWKWQTEKSSFDPLVAWKKMKSEGKIDEVYEEGENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKK-EETAEAAPKSAAKKGAKGKKPAPATEAKPKKTGWW 232
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A835Z067_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z067_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.220e-32
Identity = 102/185 (55.14%), Postives = 119/185 (64.32%), Query Frame = 1 
Query:  280 VDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADAKANKWKWQTEKSSFDPLVAWKKMKAEGKIDEVYDEDENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKEETAEAAPK---SAAKKGAK-----GKKPAPATE-----AKPKKTGWW 795
            +D  ++ QQE+L RR NK  M++YK +V   RA AD K  +W WQ      DPL  W+KM+AEGKI +VY+E EN+EGGIPIP ASFGVGG XXXXXXXXXXXXXDLRLPY DQGYVD D A +  +G  FG  KKK+  A A      SAAK  A       KKPAPA       A  KK GW+
Sbjct:   48 MDAAFRDQQEILARRRNKNKMEEYKKQVEANRAVADEKVTRWAWQRRSDGKDPLTDWQKMRAEGKIPDVYEEGENQEGGIPIPSASFGVGGXXXXXXXXXXXXXXDLRLPYVDQGYVD-DSADV--MGKFFGGGKKKKPAAPAPASKQASAAKPAAPTNKFGAKKPAPAVPPAAAPAPEKKKGWF 229
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A7S2AW55_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AW55_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.730e-25
Identity = 85/170 (50.00%), Postives = 103/170 (60.59%), Query Frame = 1 
Query:  235 WDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADAKANKWKWQTEKSSFDPLVAWKKMKAEGKIDEVYDEDENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKEETAEAAPKSAAKKGAKG 744
            WDF    E+    ++ +     QQ +L RR NKG   +Y   V + RA++D +   WK+QT     DPLV WKK+K+EGKI ++   DE   GGIPIPMASFGVGG XXXXXXXXXX   DLRLPYADQGYVD D   M   G +FG  K K E  E   ++  KKG  G
Sbjct:   69 WDFF--GESPEKKAEKEAQLAEQQAILSRRRNKGKQQEYFENVEKNRAKSDEERKMWKFQTRTDGEDPLVEWKKLKSEGKIKKLK-RDEGPGGGIPIPMASFGVGGEXXXXXXXXXXERFDLRLPYADQGYVDEDADVM---GKLFGKRKAKAEVPEEDEEAKTKKGPFG 232
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A7R9ZRA3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRA3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.720e-25
Identity = 91/187 (48.66%), Postives = 119/187 (63.64%), Query Frame = 1 
Query:  154 SCFVPSVGGGLRPSARTTSSSSVQMKLWDFGLNREAI-TGPSQVDENWKAQQEMLKRRNN-KGAMDKYKSRVNEKRAQADAKANK-WKWQTE--KSSFDPLVAWKKMKAEGKIDEVYDE--DENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKE 693
            S FVP V         T S S+ Q+++  F  N +A  +G   +DE W+AQQE+LKRRN  K   D Y +++ ++R +A  K N  W WQ++  K   DP+  WKK +  G+I ++ D+  D  + GGIP+PMASFGVGG XXXXXXXXXXXXX LRLPYA+QGYVD D   M   G +FG NKKK+
Sbjct:   23 SAFVPQV---------TPSHSTTQLRMGWFDNNFKAGGSGRDDLDEQWEAQQEILKRRNKPKAERDAYFAKIEDRREEASKKQNDMWAWQSKSYKKGEDPIDEWKKRRKSGQISDLNDQYGDPKKVGGIPMPMASFGVGGEXXXXXXXXXXXXXXLRLPYAEQGYVDDDADFM---GKLFGKNKKKQ 197
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BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A7S2A710_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A710_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.290e-24
Identity = 86/173 (49.71%), Postives = 111/173 (64.16%), Query Frame = 1 
Query:  190 PSARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGA-MDKYKSRVNEKRAQADAKANK-WKWQTEK--SSFDPLVAWKKMKAEGKIDEVYDE--DENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKK 690
            P  ++ +SS   +  +  G N++ +      DE W+AQQE+LKRR    A  +KY   + E+RA+A  K N  W WQT+K     DPL  WKK +A G+I ++ ++  D  + GGIP+PMASFGVGG XXXXXXXXXXXXX LRLPYADQGYVD D   M K+G+ F   KKK
Sbjct:   83 PMCQSATSSPSALYFFGQGSNKDKL------DEEWEAQQEILKRRRAPAAEREKYFEAIEERRAEASKKQNDMWGWQTKKYAKGEDPLDEWKKRRATGEISDLDNQYGDPKKVGGIPLPMASFGVGGEXXXXXXXXXXXXXXLRLPYADQGYVDEDADVMAKLGNFFSGGKKK 249
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BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A7S2K8B2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8B2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.320e-24
Identity = 93/201 (46.27%), Postives = 129/201 (64.18%), Query Frame = 1 
Query:  112 ALVATSTASAAQQQSCFVPSVGGGLRPSARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGA-MDKYKSRVNEKRAQADA-KANKWKWQTE--KSSFDPLVAWKKMKAEGKIDEVYDE--DENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKEE 696
            AL+AT+ A +A Q   F PS           +++SS++M L+D  +     +G  + DE ++ QQE+L+RR    A  D Y + V ++R QA   + +KW WQT+  K   DP+  WKK +A G+I ++ D+  +E ++GGIP+PMASFGVGG XXXXXXXXXXXXX LRLPYADQGYVD D   M K+ S+F   KK++E
Sbjct:   20 ALIATTIAFSASQGIAFAPSNNVRSNGLIAASTTSSLKMGLFDNWV--AGGSGKDRRDEEFEKQQEILRRRRAPQAERDAYFNTVEKRRQQASIDQQDKWAWQTKTYKKGEDPIDEWKKRRASGQISDLDDQYGEEEKKGGIPMPMASFGVGGEXXXXXXXXXXXXXXLRLPYADQGYVDEDADFMGKLTSMFTGKKKEKE 218
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A7S2SJC5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJC5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.760e-24
Identity = 79/178 (44.38%), Postives = 112/178 (62.92%), Query Frame = 1 
Query:  160 FVPSVGGGLRPSARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADAKANKWKWQTEKSSFDPLVAWKKMKAEGKIDEVYDEDENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKE 693
            FVP+  GGL   A+     +++ +   FG   E      + +E  +AQ+E+L RR +K  +D+Y   V  +R Q+D     W +QT+ +  DPL+ WK+++ EGKI ++  + E +EGGIPIP+ SFGVGGSXXXXXXXXX    DLRLPYA+QGYVD D   M K+G +F + + KE
Sbjct:   50 FVPAPAGGLLQ-AKGARGQAIRREWGIFGDKSEEKK--REEEEAMQAQREILARRKSKSKVDEYFKDVETRRRQSDEDRKIWSFQTD-TKQDPLIKWKQLRQEGKIKDL--KREGQEGGIPIPLPSFGVGGSXXXXXXXXXGERFDLRLPYAEQGYVDEDADVMGKLGRMFSFGRGKE 221
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BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: B7FWS1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FWS1_PHATC)

HSP 1 Score: 108 bits (271), Expect = 2.520e-23
Identity = 87/177 (49.15%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:  178 GGLRPSARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEML-KRRNNKGAMDKYKSRVNEKRAQADAKA-NKWKWQTEKSSF--DPLVAWKKMKAEGKIDEVYDE--DENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKK 690
            G     A    S+++ M L+D    R   +G   +DE W+ QQE+L +RR  K   DKY  +V ++R QA AK  + W WQT+  S   DP+  WKK +A+G I ++ ++  D  + GGIPIP ASFGVGG XXXXXXXXXXXXX LRLPYADQGYVD D   M KI + FG   KK
Sbjct:   18 GAFVTPANAAKSTALPMGLFDDW--RAGGSGKDSLDEEWEKQQEILAERRKPKAERDKYFEKVEQRRQQASAKQKDMWAWQTKSYSKGEDPIDEWKKRRADGTISDLENQYGDPKKIGGIPIPGASFGVGGXXXXXXXXXXXXXXXLRLPYADQGYVDDDADVMGKISAFFGGGTKK 192
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A7S3P2V2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P2V2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.070e-23
Identity = 99/239 (41.42%), Postives = 127/239 (53.14%), Query Frame = 1 
Query:   94 MKVAALALVATSTASAAQQQSCFVPSVGGGLRPSARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADAKANK-WKWQTEK--SSFDPLVAWKKMKAEGKIDEVYDE--DENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKEETAEAAPKSAAKKGAKGKKPAPATEAKPKKTGWW 795
            MK+AA  L+A + ASA    S F+P+     RP    T+   +    W  G           +DE W+ QQE+L  R +      Y  +V E R +A  K ++ W WQT+K     DP+  W+K +A+G I ++ ++  D  + GGIPIP ASFGVGG XXXXXXXXXXXXX LRLPYADQGYVD D   M K+ S FG  KKKE                  +P P  +  PKK G W
Sbjct:   14 MKIAAGILLAGTIASA----SAFMPTA----RPQTTETALQGL-FDSWRAG----GTASQDDLDEQWQRQQEILANRRDPTKTKAYFDKVEENRKEASRKQSEMWSWQTKKYGKGEDPIDEWRKRRADGSISDLENQYGDPKKIGGIPIPGASFGVGGXXXXXXXXXXXXXXXLRLPYADQGYVDEDSDVMGKLASFFGGGKKKEP-----------------EPEPVKDEPPKKKGGW 222
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Match: A0A1E7EU29_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU29_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.360e-23
Identity = 83/171 (48.54%), Postives = 105/171 (61.40%), Query Frame = 1 
Query:  193 SARTTSSSSVQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADA-KANKWKWQTE--KSSFDPLVAWKKMKAEGKIDEVYDE--DENEEGGIPIPMASFGVGGSXXXXXXXXXXXXXDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKK 690
            S RT  S  +QM ++D         G    DE  K Q+ + +RR  K   DKY  +V ++R  AD  +++ W WQT+  K   DP+  WKK +A+G I ++ D+  D  + GGIP+PMASFGVGG XXXXXXXXXXXXX LRLPYADQGYVD D   M K+   FG N KK
Sbjct:    3 STRTQHSMELQMGMFDNWRAGGTAGGDELNDEYAKQQRILEERRAPKSQRDKYFQKVEQRRQTADKERSDNWAWQTKTYKKGEDPIDEWKKRRADGTIGDLEDQYGDPKKIGGIPLPMASFGVGGEXXXXXXXXXXXXXXLRLPYADQGYVDEDSDVMGKLSGFFGGNNKK 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig147.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS75_ECTSI3.490e-13496.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z067_9STRA2.220e-3255.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2AW55_9STRA3.730e-2550.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9ZRA3_9STRA4.720e-2548.66Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2A710_9STRA1.290e-2449.71Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2K8B2_9STRA3.320e-2446.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2SJC5_9STRA6.760e-2444.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7FWS1_PHATC2.520e-2349.15Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3P2V2_9STRA4.070e-2341.42Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7EU29_9STRA4.360e-2348.54Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig147contigE-siliculosus-1a_F_contig147:9198..15804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size705
Model size1996
Exons6
Ec32 orthologEc-01_000830.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CSXX@1,2S4AJ@2759
Seed eggNOG ortholog2880.D7FS75
Seed ortholog evalue3.5e-110
Seed ortholog score404.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig147.2747.1prot_E-siliculosus-1a_F_contig147.2747.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig147 9291..14606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927980.1714199-UTR-E-siliculosus-1a_F_contig147:9197..92901622927980.1714199-UTR-E-siliculosus-1a_F_contig147:9197..9290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig147 9198..9290 +
1696318761.1558878-UTR-E-siliculosus-1a_F_contig147:9197..92901696318761.1558878-UTR-E-siliculosus-1a_F_contig147:9197..9290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig147 9198..9290 +
1622927980.2778971-UTR-E-siliculosus-1a_F_contig147:14606..158041622927980.2778971-UTR-E-siliculosus-1a_F_contig147:14606..15804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig147 14607..15804 +
1696318761.2525642-UTR-E-siliculosus-1a_F_contig147:14606..158041696318761.2525642-UTR-E-siliculosus-1a_F_contig147:14606..15804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig147 14607..15804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927980.207611-CDS-E-siliculosus-1a_F_contig147:9290..94551622927980.207611-CDS-E-siliculosus-1a_F_contig147:9290..9455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 9291..9455 +
1696318761.1725242-CDS-E-siliculosus-1a_F_contig147:9290..94551696318761.1725242-CDS-E-siliculosus-1a_F_contig147:9290..9455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 9291..9455 +
1622927980.2191129-CDS-E-siliculosus-1a_F_contig147:10361..104291622927980.2191129-CDS-E-siliculosus-1a_F_contig147:10361..10429Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 10362..10429 +
1696318761.1907609-CDS-E-siliculosus-1a_F_contig147:10361..104291696318761.1907609-CDS-E-siliculosus-1a_F_contig147:10361..10429Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 10362..10429 +
1622927980.2295938-CDS-E-siliculosus-1a_F_contig147:10696..107631622927980.2295938-CDS-E-siliculosus-1a_F_contig147:10696..10763Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 10697..10763 +
1696318761.2055576-CDS-E-siliculosus-1a_F_contig147:10696..107631696318761.2055576-CDS-E-siliculosus-1a_F_contig147:10696..10763Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 10697..10763 +
1622927980.2423515-CDS-E-siliculosus-1a_F_contig147:11207..113061622927980.2423515-CDS-E-siliculosus-1a_F_contig147:11207..11306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 11208..11306 +
1696318761.2230804-CDS-E-siliculosus-1a_F_contig147:11207..113061696318761.2230804-CDS-E-siliculosus-1a_F_contig147:11207..11306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 11208..11306 +
1622927980.254861-CDS-E-siliculosus-1a_F_contig147:11867..119961622927980.254861-CDS-E-siliculosus-1a_F_contig147:11867..11996Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 11868..11996 +
1696318761.232506-CDS-E-siliculosus-1a_F_contig147:11867..119961696318761.232506-CDS-E-siliculosus-1a_F_contig147:11867..11996Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 11868..11996 +
1622927980.265382-CDS-E-siliculosus-1a_F_contig147:14429..146061622927980.265382-CDS-E-siliculosus-1a_F_contig147:14429..14606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 14430..14606 +
1696318761.2413049-CDS-E-siliculosus-1a_F_contig147:14429..146061696318761.2413049-CDS-E-siliculosus-1a_F_contig147:14429..14606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig147 14430..14606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig147.2747.1

>prot_E-siliculosus-1a_F_contig147.2747.1 ID=prot_E-siliculosus-1a_F_contig147.2747.1|Name=mRNA_E-siliculosus-1a_F_contig147.2747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=235bp
MKVAALALVATSTASAAQQQSCFVPSVGGGLRPSARTTSSSSVQMKLWDF
GLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSRVNEKRAQADAK
ANKWKWQTEKSSFDPLVAWKKMKAEGKIDEVYDEDENEEGGIPIPMASFG
VGGSFGVGGKWDEGGRFDLRLPYADQGYVDPDEAPMKKIGSVFGWNKKKE
ETAEAAPKSAAKKGAKGKKPAPATEAKPKKTGWW*
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mRNA from alignment at E-siliculosus-1a_F_contig147:9198..15804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig147.2747.1 ID=mRNA_E-siliculosus-1a_F_contig147.2747.1|Name=mRNA_E-siliculosus-1a_F_contig147.2747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6607bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:9198..15804+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACACACAGCGCGGATCATCGACGTCCACCTCCTAGCACACACACACCTTA
CACCCTCCATTCCCTGACAGAGAGTACCAGACGACATCACACAATGAAGG
TAGCAGCTCTAGCACTGGTGGCGACTAGCACGGCTTCGGCAGCGCAGCAG
CAGTCATGCTTCGTGCCATCAGTTGGAGGCGGTCTCCGGCCATCTGCAAG
GACGACGAGCAGCAGCAGCGTGCAGATGAAGCTTTGGGATTTCGGGCTCA
ACCGCGAGGTACGGTACGGTCGGCTCCCTGCGCTGCTACTCCTCTGGACG
CGCCTGTTCCTTCGCTGGGGTGATGTCTTTCGATCGAGAGGGGCAAGCAC
AAAAAACCTCCTAAGTCATGTACCCTCTCTTGGCGATCCGGTGTGATGAC
TCGACCGCTGGCATCGTATGCACACGCTTGACGTGGCGAATTTGTTCTGG
CTTCGCCTTGTGCCTTGAAGAGAATATTCGCCGCATGTGTATTACCTGGT
AGCAAAACAAGAGGGAGAGAGAGAGACGCAACACCACCGCATCCTCACGC
CTGGCAAAACCCCGAGTACCAGCGGTTTGCAAGTTGGGGCCGTAACGCGT
TCGTCGTTGAGATACAGCAGTAATTGTATGACTGTGGGTGTATCTCGAAT
GGGTAGTCTTTCCGTGCGTGTATTTTGTTTCTCCTTAATCCATTCCCGAC
AGGATTTTGGAAACGTGCTGTCGCATTATCGATGAACAACCGTCGTGGGC
ATCAAAATGCACCGCCTTACGCCGCCCCTTGTTAAAGCGACATGTTTAAT
ACGCCCACAAGGGCTTCGTACTCGAAGGGGGGGGGGCTCGTCCGCTGAGG
GTGGTAGGAGGTGGTTGCGTGAGAAGGTGATAGGCATCAAGTGCTCGCCA
AGCGGCACGACGTGAGGAAGAAAGGTCGCGCAGTGGAAGGCAGCGGGGCA
GCTGGTGTGAGCACACACCGACCACCGCCGTGGTTGGGGATGTGTTCTCC
CTACTCGCGGAGTAAAGAGGAACTGCTGTGAATAGCACGAGTGTTGTCGA
GAGAGAACAGGTCCCAGGGGAAGCCACTGCACACCATGGCTCATGTTCGT
GTGTGAATGTACATGTTGGCCGCTGCTGCTGCTGCTGCTGCTGCTGCAAC
TGCTGGCGTAACAGGCGATCACGGGCCCGTCCCAGGTGGACGAGAACTGG
AAGGCTCAGCAAGAAATGCTCAAGCGACGAAAGTGAGGAGAGGGCGCGTC
AACAAGTACTAACACACTTAGCCCTGGAATGAAGACGACGAACCCTGAAC
CAGCAGATGGAGTCGGTGCTCTGCACGCAGCAGAACGTGTGGTGTGACTT
TTTGTTGTTGACTCTTCAGTCTCTTGTCATGTGTGACATGTTGTCCTACA
TGCAGCGTAGCCCTCTCGAGTAGCGTGTTGACGCACCCACGTTTTCTGAA
TCACTCCGGTGTCGTTTGCCGCCGTCTCGGTTCCTCCCCGGCCGTTCAGC
AACAAGGGCGCCATGGACAAGTACAAGTCCAGGGTTAACGAGAAGAGGGC
ACAGGCGGACGCGAAGGTATCAAGTAACTCCACGAATAGAACGCCGCCTG
GAAAGACACGATCAATCTCCGTAGATGTGCCGTTTCAAAGCCATGTCGTC
GTAGATTGTAGTCTTGTTGTGATGGTGTCCGGGACGATCGGGGGTGAGCG
CGCAAGGCGACCGTACACGGATGTGATTAAAAAACGTGTCTTATTACAAT
TTGTTAATCTCTCGGAGAAATGAGAGGTGGTTTCCTTGAGCGTGAAACCA
ATCCATCTCCGCTCTCGGTGAGATAGATGCCACTGCCCCACTCGTCGCTG
CAACATCCTTGTTCACCGATCACCACTGCTGTAGAGTCAAGACCTCGAAA
AATAGTTCGTCAAAGCACGTATGTGCCTTTCTGAAGGTGAAGTCGCGTGC
TGATCTTCTCTCTCTACGAAACCCTCTCTTTCGTCGTCGTTCCTTCGTCG
TTCTCCGCAGGCGAACAAGTGGAAATGGCAGACCGAGAAGTCTAGCTTTG
ACCCGCTCGTGGCGTGGAAGAAGATGAAGGCAGAGGGCAAGATCGACGAG
GTTTACGACGTGAGAGACACACACACACACACAAATTAGACAGCAACAGA
TGAGACAAGAGAGACATACAGACAGAGAGACGGAGGAGACTCGCGATTTT
AAGAAAGACCTTCATGTCGAGCGGGTGCGCAGACTAGATAATGCGCAGGG
CGCCCGCCTCCGAACAGTCCGCGGGGGGTGTTTGCAACTCGTGGGCGAGG
AATCGGTACTTGAAATGTTAGTTCTCCGAATGATGAAACGGGAAGTCTGC
GGGCGGTGTTCGCAATTCGTTGGCAACGACGCGACCGACTCTCCGGTGCT
CGTGCTATGTATCGGCTGTGGCACCCTGACAGCCGCACAAGCAAGGTTCT
TCTCCACCATCGCCAGACTGCTCATGCGTGTGAATTCACTCCTTTTCGAA
GAACATACCAAAATCTGCTGAAAGCAATGCATTTGCTTGGGAGATTTTCA
TTGCTAGCATCGACCGCGCTAACAGACGAAAAACGTCAGTGCGGCTGCCT
GACAACAGGCAATGATTCTGAAGGCCATGATCTGTGCGCGCGCGTGTGTG
TGTGGCTTCTGTCCGGCCAGGAGGATGAGAACGAAGAAGGCGGTATCCCG
ATCCCGATGGCCAGCTTCGGGGTGGGAGGCAGCTTCGGCGTCGGAGGGAA
GTGGGACGAGGGCGGACGGTTCGACCTCCGACTTCCGTACGCCGACCAGG
TGCTTATGCATTGCGCAAAGATTATTTTTTTACTATAATTTTTGGTTGTT
TTTTGTTTCTATTTCTTATTTTTTGTTTAGACGCCTGGCTGACTGCCTTC
GCTGCAAGTGGAACTCTGCTGGTATGTGTATGTATTACTTGGTACATCGT
ACATCGTTGAGACTACAATGCCCGTTCTAGACAATACTGAGTGTTTACAG
TGAGTGGGTAGAGGAACTACTGGATACGGGGCTGTTTCAAAATATGTAAT
TATATCTGAGACCAAGCAAACAACGCGGCCAGCTTCATTTCTCTTGCTAC
ACCTGAAGTTACCTTTTTGCACGACATGTTGTTTGAGGTCCCTGCTGCTG
TAGTAGGGGTCTTGGAGAAAGTTGGAGGCTCCTTTAATGGTGGCATGGTG
AGCAGGAAGTTTACGGGCCCCTCGTCGAAACGCGTGTCTTCTTCAGTCAA
CAACATCACGCATAAGCGGTCAAAAGCGGAGTACCGAGTCCTTGCGGCGG
GCACCGACCAATATGCGCGTTCGGTTGTTGGGTGTGAAGCAATTCGAGAA
TAATTCGTCTGGAAACATCGTGTCGGCAGGGTGGAGATTGTTCATGTTTT
GGCGTACGGTGGGTGTTGTCGCATCGCTCGCACAAGAAGAGCGTGCCTTG
TTTAACCTGTACCCAACCCACTTTCAAGAGGATCGTCGTCGAAAGGGTCG
GCGTCAAGAAAGGTAGGGCAGAGGACCGTGGGCACAACGGGGCGATGGTG
GTTGATGAGTGGTGCCCGAACTCATGGGCATGCATGAGTAGGGTCACCAC
CCATCAACAACCATGGTGCCCACGGCCCTCTGCCGTACTTTGTTCTTGAC
GCCGACTCAGTCGACAAAGGTCCTCTCGAAAGTCTCGCTGCTGGCAAAAG
CGCTTGGCGGCCGCTGCCGAAAAGTCTCCACAAAGCTCTACGGTGATTGA
TTCTAAGCGAAGAGGTCGAATTTCATTGCACTGGCGTTGTTTGGCAACCT
CGTGTTGCTTGGTTCTTTGAGTTCGATGGCCTCGCGTGGGCATCGCGTTA
GCTGAGGTTCAGAATAGGGCACGTTGAGCCACGGAGGCGTTAAACCTAAG
GGACAGGGCTCGAGGGAGCGGAGTCGCTGCTAACTCGCGGCTCATCAGGA
GCCGACATGCCTACGCGGGGCAAGGACGTAACCTCGCCAATGCTCCACAC
AGGAGTAGACGAAAGTAAAAAAAAAATCGGAATTCCAGAATCAAGCAACA
ACGACCGTGCCAAACAACGCCAGTGTAATGAGATCTGATCTCTTCACTTA
AACCCAATCATCGTAGAGCTTTGTGAAGACTTGTCCGACCACAGATAGAA
ACAGGTTGTTGCTGCTTTCCTCTGTTCTCTGCTTGATTACGCTCTCCTGT
TGCCTTCCAGCACAAAGCCCAAACGTACACAGATCCCAAGCACACACTGA
ACGGAAGGGCACATGCCTCGGCATAAAGCCCGAATCTTGCATGACGTCAC
ATGGTAACACCTGATCAAGCCATGGTCAAACACGATCAAATGGCTACCCC
CAAATACCATAGCAGAGCGCCGTGGGCGTTCATCGCCGGTATTATGTGAT
TATCACCTACCCGCACCCCGCACCCCTCATCTCCACACGTCACGCCTGTA
GTCAGTAGGGTCAGTGCGATCACCCCCGGTCAGTACCAGTACCGCACATC
CTGCAAGTGCGGCAGCATTGCGGTAGTTTTTTTGCACGTTCGGCCGCAGG
CACGGCAAGTAGTTCTTTGCAGGCGGTGCTAACTCACCGCCTATTTAGTT
CCAAGCAACTCCGGTCCCTGCAAGTGTGCGGTAGTGATATCACACACCCT
GGTCATGACACCACACCCCCTTCATGTCTTCCGCGACCTGCACTTTTGCA
CTCGGGGCTACCCAGCATAACACTCACCCCACAGAATCAACACCAGGTGA
TCATTTTTTCAATCGCCAAATTATCGCCGGGGTGTGTTATCTTGCGTCAT
ACACGGCACGGACGTCGGAAGGTACCGAGCGTGGTTTTTTAACGTGAAGA
CAACAACTACTGTACCGCCGCCCCCCTATCCCGGGAAGCAATGTCGATAG
GTACGCAAAGCACTTGTGAGCCACCTCCGGCAAAGTAGGAAGGATCGATT
GGCGATCGGTCCAATCCTATTTCCTATCGAGGACGCGTGGTCCATGACCT
TTTACCGCTAAGGCGTGCAAGACAATAAAACGCCCCCCCCACCCCAGTTG
GACCACGGCGGATATTTCAGGGTACAGAGCGGAGACCGGAACGTTTTTTG
GAGTGCAAAAAGAAAGAGCAACTGCTGTACCCTTCACCATCCAGATAGAC
CGAAACTGAACGATACTGCTCGGCGACCGAAACGGTTTTAACGTCAAGAC
GACAACAACAACAACAACTGCTGTACCCCCAGGGCTACGTGGACCCGGAC
GAGGCCCCGATGAAGAAGATCGGCAGCGTCTTCGGCTGGAACAAGAAGAA
GGAAGAGACCGCGGAGGCCGCACCCAAGTCCGCTGCCAAGAAGGGCGCCA
AGGGAAAGAAGCCCGCGCCGGCCACCGAGGCCAAGCCGAAGAAGACCGGC
TGGTGGTAAAACAGACGCATTATTTTGTTGTGGATTAAGACTAAACAGAT
GGACAAGTCTAAACTGATGGCTTGTTTTGGTCGACTAATACTGAGGAGAT
GACTTTAAGACCGAGGAGATGGGCTTATTTTTGTGGACTCAGACTTCAAC
AGACGGTTTATTTTTGGTCCACTGAGACTAAACAGACGGGTGTTATTGGG
CGACGAAGACTACGAAAGACTGCTTCTGTTGTGTTAGTTTTACGTGGATT
TATTTGTTAAGGCGATTCTCTTTTTTTTTTTGCCAGGGGCGCCAGGGGGA
GACACCCCGGATTTGAGTTTCGACGTTTTTCAGGTGGCGTGTGGCCAGCA
GGTGCTGCTTCCGTGCTTGTGCTTCGGGTGTTTTTCGTCGAAGACTCTTG
AATCGCGGGGCGGGCGAGGGGGGGTGGGGGGGTCAAAGCACCCCCCACGA
GCTTGTATCGGTCGGGGACTTCTTTTGCCGTCTTGCTGTTGGTCGGAAAG
TCGGCAACACCCTCTGCCCGTCTTGATTGTTGCTTGGTCGAAACTCAGCA
GGGGCATTTCCCTCTTGTGTAGAGTTTACTCTCGGGTTACTCTCATATAA
CCTTCGTTTGGTATTGTACACACACTTTGTTTCCTCCGTCGTACGGCCAG
TGGTAAGGTGAGGCCCCGGTACGCGGAGAGAGGAAGCATGTATCGTAGCG
GCGAGGGCGCGTTAGACCGTAGAGAAATATCAGAATCGCTCGAGGCTATA
AGGTGGAAGCAGAACGTCCATGGCACGATCGTTCGTGGCTAGTACATAAA
GGAGTGTCGAGAGAGAGAGAGGTTCTCCTGTTCACGAGGCGTGCAAGTGT
GTACATAAGAGTCAACGCCGGAGAAGGAGAGGGTTTTACGGTAACTGTAT
TGGGTGAGTATTCTCCGTGAACGTTCGCCAATGGGGCTTATCTAATTCGT
GGGCGTTGTGGGTGTGATGTTTTGTGTCCGCTGAAAGGACGGTTGGCGGT
GACACATCGCGAAGAAGATGATGCCGGGGTGCATGAAAAAAAATATTAAA
CGAAACTGATCCTCTTCCCTTTCGAAGCCAGTCCACAACAGAGGGCTTCA
GACAGTGTCTATCTGCCCCGGCCTGGTATCGCAGGGACGAGGGAGACGCG
CTCGTTCCCCTACACAACGTTTCGGAAACTAAAGCGGCCGAAGAGATATC
CGCGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig147:9198..15804+

>mRNA_E-siliculosus-1a_F_contig147.2747.1 ID=mRNA_E-siliculosus-1a_F_contig147.2747.1|Name=mRNA_E-siliculosus-1a_F_contig147.2747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig147:9198..15804+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGGTAGCAGCTCTAGCACTGGTGGCGACTAGCACGGCTTCGGCAGC
GCAGCAGCAGTCATGCTTCGTGCCATCAGTTGGAGGCGGTCTCCGGCCAT
CTGCAAGGACGACGAGCAGCAGCAGCGTGCAGATGAAGCTTTGGGATTTC
GGGCTCAACCGCGAGATGAAGGTAGCAGCTCTAGCACTGGTGGCGACTAG
CACGGCTTCGGCAGCGCAGCAGCAGTCATGCTTCGTGCCATCAGTTGGAG
GCGGTCTCCGGCCATCTGCAAGGACGACGAGCAGCAGCAGCGTGCAGATG
AAGCTTTGGGATTTCGGGCTCAACCGCGAGGCGATCACGGGCCCGTCCCA
GGTGGACGAGAACTGGAAGGCTCAGCAAGAAATGCTCAAGCGACGAAAGC
GATCACGGGCCCGTCCCAGGTGGACGAGAACTGGAAGGCTCAGCAAGAAA
TGCTCAAGCGACGAAACAACAAGGGCGCCATGGACAAGTACAAGTCCAGG
GTTAACGAGAAGAGGGCACAGGCGGACGCGAAGCAACAAGGGCGCCATGG
ACAAGTACAAGTCCAGGGTTAACGAGAAGAGGGCACAGGCGGACGCGAAG
GCGAACAAGTGGAAATGGCAGACCGAGAAGTCTAGCTTTGACCCGCTCGT
GGCGTGGAAGAAGATGAAGGCAGAGGGCAAGATCGACGAGGTTTACGACG
CGAACAAGTGGAAATGGCAGACCGAGAAGTCTAGCTTTGACCCGCTCGTG
GCGTGGAAGAAGATGAAGGCAGAGGGCAAGATCGACGAGGTTTACGACGA
GGATGAGAACGAAGAAGGCGGTATCCCGATCCCGATGGCCAGCTTCGGGG
TGGGAGGCAGCTTCGGCGTCGGAGGGAAGTGGGACGAGGGCGGACGGTTC
GACCTCCGACTTCCGTACGCCGACCAGGAGGATGAGAACGAAGAAGGCGG
TATCCCGATCCCGATGGCCAGCTTCGGGGTGGGAGGCAGCTTCGGCGTCG
GAGGGAAGTGGGACGAGGGCGGACGGTTCGACCTCCGACTTCCGTACGCC
GACCAGGGCTACGTGGACCCGGACGAGGCCCCGATGAAGAAGATCGGCAG
CGTCTTCGGCTGGAACAAGAAGAAGGAAGAGACCGCGGAGGCCGCACCCA
AGTCCGCTGCCAAGAAGGGCGCCAAGGGAAAGAAGCCCGCGCCGGCCACC
GAGGCCAAGCCGAAGAAGACCGGCTGGTGGTAAGGCTACGTGGACCCGGA
CGAGGCCCCGATGAAGAAGATCGGCAGCGTCTTCGGCTGGAACAAGAAGA
AGGAAGAGACCGCGGAGGCCGCACCCAAGTCCGCTGCCAAGAAGGGCGCC
AAGGGAAAGAAGCCCGCGCCGGCCACCGAGGCCAAGCCGAAGAAGACCGG
CTGGTGGTAA
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