mRNA_E-siliculosus-1a_F_contig1467.2739.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2739.1 vs. uniprot
Match: D8LI44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI44_ECTSI) HSP 1 Score: 330 bits (847), Expect = 4.630e-114 Identity = 158/165 (95.76%), Postives = 162/165 (98.18%), Query Frame = 1
Query: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPIESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFFMKSSFRDQLSLEELRTEFEKFAEKRLARELPDFYQGECLLIIH*FKP 495
MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRP+ESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFFMKSSFRDQLSLE+LRTEFEKFAE+RLA+ELPDFYQG CLLII FKP
Sbjct: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPVESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFFMKSSFRDQLSLEDLRTEFEKFAEQRLAKELPDFYQGGCLLIIQTFKP 165
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2739.1 vs. uniprot
Match: A0A6H5K1F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F7_9PHAE) HSP 1 Score: 266 bits (679), Expect = 2.910e-81 Identity = 148/254 (58.27%), Postives = 152/254 (59.84%), Query Frame = 1
Query: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPIESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFF-------------------------------------------------------------------------------------------------MKSSFRDQLSLEELRTEFEKFAEKRLARELPDFYQGECL 471
MWRPWAQVALLT+PWCFPAVVYT DEDLAPFNETRNWCESYRP++SFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHN F MKSSFRDQLSLEELRTEF KFAE+RLARELPDFYQ CL
Sbjct: 430 MWRPWAQVALLTLPWCFPAVVYTTDEDLAPFNETRNWCESYRPVQSFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNLFDSLVLFWPPIAEPMYRYLTGDEEYLHSYTHGFSTLPTPAQVQDSIPEHVVLDTELRQNILQPVTGCIAFVVFPSLHSCAVTAAIAHFPSSCFPFVSQMKSSFRDQLSLEELRTEFGKFAEERLARELPDFYQA-CL 682
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2739.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI) HSP 1 Score: 233 bits (595), Expect = 4.430e-72 Identity = 120/197 (60.91%), Postives = 134/197 (68.02%), Query Frame = 1
Query: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPIESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFF----------------------------------------MKSSFRDQLSLEELRTEFEKFAEKRLARELPDFYQGECL 471
MW PWAQV LLTVPWC PAV YT D+ L+ FNE RNWCE YRPI++FTY+L LIA AFVLVYQMRKVRKQMNEY LQVFQL FLL+TG+VVFPLQH +LD++H IRRIWVLYHNF MK S RDQLSL+ELRTEF+KFAE R+ARELP+FYQ CL
Sbjct: 67 MWPPWAQVLLLTVPWCIPAVAYTIDDHLSRFNEVRNWCEIYRPIDTFTYILGSSLIASAFVLVYQMRKVRKQMNEYRLQVFQLAFLLLTGSVVFPLQHLLLDNKHGIRRIWVLYHNFLDSLVLFWPPIAEPMYRYLTGDVDYLNSYTQGFSTLPTPAQMKGSLRDQLSLDELRTEFQKFAENRMARELPEFYQA-CL 262
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2739.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI) HSP 1 Score: 154 bits (388), Expect = 5.250e-40 Identity = 87/197 (44.16%), Postives = 108/197 (54.82%), Query Frame = 1
Query: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPIESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFF----------------------------------------MKSSFRDQLSLEELRTEFEKFAEKRLARELPDFYQGECL 471
MW WAQVALL++PW P V Y+ L+ FNE NWC+ I++ YV G+ I GAF L +QMR+VRKQMN Y +QV QL FL VTGT++FPL L IRR W++Y N M+S +DQLSLEELR EFEKFA+ ++ARELPDFY+ CL
Sbjct: 97 MWPAWAQVALLSIPWLVPVVAYSIKPSLSEFNELGNWCDINVAIDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFYRMQVLQLLFLFVTGTIIFPLLEESLHSN--IRRTWIMYDNIVSSIILFWPPIIEPLYRKLSGDEDYLYSYTKGFSQLPTPAQMRSCLKDQLSLEELRCEFEKFADSKVARELPDFYKA-CL 290
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2739.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 8.230e-7 Identity = 53/179 (29.61%), Postives = 79/179 (44.13%), Query Frame = 1
Query: 19 QVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPIESFTYVLDG----LLIAGAFVLVYQMRKVRKQMNEYHLQVFQL---TFLLVTGTVVFPLQHAILDHRH-EIRRIWVLYHNFFMK-------------------------SSFRDQLSLEELRTEFEKFAEKRLARELPDFY 456
QV LL+ P ++ D DL F+ET N C + +D +++ V Q+R VRKQ NEY + L T LL + +V + ILD H +RR+ + + F MK ++ QLS+E+LR EF ++ E ++A EL DFY
Sbjct: 103 QVLLLSSTGLIPLLLAILDPDLFFFDETANSCGTSTGATRVVLGMDAFGFSMILCLWLVCARQLRWVRKQFNEYEAMKWTLSCLTILLFSYAIVVAI---ILDGHHCYVRRVAIAWEPFKMKLTGNAEYLYSFTQGFSEMPSPAQLKANLAQQLSVEQLRVEFRRYIEAKVAHELVDFY 278 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1467.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1467.2739.1 >prot_E-siliculosus-1a_F_contig1467.2739.1 ID=prot_E-siliculosus-1a_F_contig1467.2739.1|Name=mRNA_E-siliculosus-1a_F_contig1467.2739.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPIESFTYVback to top mRNA from alignment at E-siliculosus-1a_F_contig1467:8942..13149+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1467.2739.1 ID=mRNA_E-siliculosus-1a_F_contig1467.2739.1|Name=mRNA_E-siliculosus-1a_F_contig1467.2739.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4208bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1467:8942..13149+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1467:8942..13149+ >mRNA_E-siliculosus-1a_F_contig1467.2739.1 ID=mRNA_E-siliculosus-1a_F_contig1467.2739.1|Name=mRNA_E-siliculosus-1a_F_contig1467.2739.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1467:8942..13149+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |