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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1450.2625.1 vs. uniprot
Match: A0A6H5L2C4_9PHAE (Cystatin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C4_9PHAE) HSP 1 Score: 284 bits (726), Expect = 1.320e-95 Identity = 146/160 (91.25%), Postives = 153/160 (95.62%), Query Frame = 2
Query: 131 MRVGPLLALLLSGLGSSVSARETTKTTVSDKEAAAAEKRGDRPDKATRPTYLHPRDKMNGRGPVASAPLAGAKQDVTGSNDQHLSEVTEFAAEYLTEQNSELTYIQIKAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERTLKSDTVTECT 610
MR GPLLALLLSGLGSSV A ETT TTVSDKEAAAAEKRGDRP++ TRPTYL PRD+M+GRGPVASAPL GAKQDVTGSND+HLSEVTEFAA+YLTEQNSELTYIQ+KAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERTLKSDTVTECT
Sbjct: 1 MRFGPLLALLLSGLGSSVFAGETTTTTVSDKEAAAAEKRGDRPERPTRPTYLRPRDQMDGRGPVASAPLVGAKQDVTGSNDKHLSEVTEFAAKYLTEQNSELTYIQVKAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERTLKSDTVTECT 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 483 |
| Model size | 613 |
| Exons | 4 |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1450.2625.1 >prot_E-siliculosus-1a_F_contig1450.2625.1 ID=prot_E-siliculosus-1a_F_contig1450.2625.1|Name=mRNA_E-siliculosus-1a_F_contig1450.2625.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=161bp
MRVGPLLALLLSGLGSSVSARETTKTTVSDKEAAAAEKRGDRPDKATRPT
YLHPRDKMNGRGPVASAPLAGAKQDVTGSNDQHLSEVTEFAAEYLTEQNS
ELTYIQIKAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERT
LKSDTVTECT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1450:1766..4841+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1450.2625.1 ID=mRNA_E-siliculosus-1a_F_contig1450.2625.1|Name=mRNA_E-siliculosus-1a_F_contig1450.2625.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3076bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1450:1766..4841+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGAGATGCTGTGAGATGGCTCACCTCTCTCGCCAACTCACAGCCCTCTTG
AACTAACTCCATCTCACAGCGCGCGTTCAACAGGTGAGGATGGGAAAAGG
GGGGGCGAGCCGCTTGAATGTGGTATCAGGAATAGCACAGCGATAGGGAG
ATGTACTTCAGTTTGTCAGCGAAGCTTGTGCTTGAGTGTTTTTAGGAATC
TTTCCGTCTCTTGACCTCTGCCGCTGCTTCCATGTAGCTTCAAGGACTGT
GGTGGTTCAACGAGTTTCCGTAGTGGGTCAAAGCAGCAGCTTCCAGTACA
CGATAGAGTTAATGGTGAGACGTAGGCGGGTTGTGCTCAGGGAACCCAGG
CCAGCGGCAACACAGACGATTAGCTCACCGCCTCCCTCCTGTGTGATATT
TTTCGGCGCTCGTCTTTCGTACCAAAAGTTTTTCTCAAAGTCTAGACTGG
TAACGTGTAGTCGTGTAGTCTACAGTCTTGTGGCCAGCAGTCAACAGATC
TACCCAAGAAACACGACACCAAGTCCGTGAACGAGTCTGCCGTGGGTCGT
GCGACGACCTTGTCTTCCTCTTAGCAACGAAAATACAGCGAGTCGCACGT
GTTTGGTGCAGTGCAACAAAGGGGTAAATTTTTCGTCAGGAGGGGAACTC
CACAACAGCTGCTGCGCGAGGAATTTTCCTCGCGAATTCCCATCTCCGAC
ACCTCCAAGAATACCGTTGAGTTTTGTTGGGGGGGATAAATAGCGTACAG
CTGTGGCCTACCAGTAGGTGGACTCTTGGCGGTTTGATCCCACCGTTGCT
GGAGCTCAGTTTCAAGCAGAAAGCGCGTTTACAGCAGTAGTATTTGTCTC
TCTGCACCTTCTTCGCGAACAACGTCCTACTCTCGAAGTATTTATTGGAG
AAACGCTTCCTTCAACCCCCAGCTGTGTGGCCGACAGTAGGCCGGTCATG
AGCAGGAGCACATCTGCCCCGTGCTTCAGGTTTAGCCGTGGACAACTTGC
TTGCTTGTCCGCACAGCCGTCGATAAACGATGGGAAAACGCGTAAGAGGT
ACACTCCTGATTATGAAGGATAAAGCACAGGTCAGGGCCTCCACTAGCAT
CTCCCCTTTGAGGTATGGATTCCACCCCACATGCTCATCCCTGCCTAACA
GCAAGGAAGAGCAAAGCGCTGCTGTCCCGCAAGCGACAATTTAAAAGTGA
TCCCATCATCATGGGTCTTCCAGATTGCACAACACGTGGCAGTATAACCC
CGGCGATGGCTGTTAATCAGCGCCGACACAAAACAAGAAATAAGCTTGCC
TGCCCCGTCCCCCCCCCCTGTTTATCGTTTTGCCTGTGTTTCGGCCAGCG
GATAAACCTCACTCATTCTTCACTCGACACGTGCAAGCTTCACGGATGAG
AGTTGGGCCCTTGCTTGCGCTGCTTCTGTCCGGACTGGGCTCCTCCGTTT
CCGCTCGGGAGACGACGAAGACAACAGTTTCGGACAAGGAAGCAGCAGCA
GCTGAGAAGCGCGGCGATCGGCCCGACAAAGCCACCAGACCCACCTACCT
GCACCCGCGTGACAAGATGAATGGCCGAGGCCCGGTCGCGTCGGCGCCGT
TGGCGGGGGCCAAGCAGGACGTGACGGGCTCGAACGACCAGCATCTCAGC
GAAGTCACTGAAGTGAGTTGTGGTTCATGGATGGCTGTTTTTTTTTCCTG
AAGTAGACACGCGCCTTATAAGTCGATTTCGAGCGCGCCTTCTTGGTGGA
AAAGAGCTGTGCGGATTTTGATCTTTGCGGTCGTGCGTGATGTATGAGGT
GTTTCCCCCCGTAGACAGCTGAAGAGTATATCCACGGTAACACCTTGTTG
TGGAATGGTAAGATATTTGGCGAGGTGAGTCGAGGCAAAGGCTGTTCGGA
ATAACCGTCCAGCGGGGAGCTACCTTGGTTGGAGTTTTTTTTTCCATGCC
GTCGAGAAACGTCGTGCAAGCTAGTTCGAGGTTCATGGCCGTACTCTTCT
GGCGTGCATTCGAAAATATGACGAGAGCTCTGGTCCGCGTTGTTGGCAAT
GTTGACGGCAACGTGAGCGGTCACTGGAGAGCGAGTCGCACTCTGCTTAC
CCTGCCATGTATGGCGCAAATGCTTACCGACACGTCGTGATACTCCCCCA
CCCACCAGCCATTTTTCAATCTGAGCCCTTGCTGTCTGGTGTCCTAGTAC
ATACCTCGCCCCCACCAATCCCCGCTGCCTCCTCCCACCATTGCTAACTC
CGCCATCCTCGGGTGTCGTGTCCTTGTTTGGTGTATTTCGCTCTGTGGCA
GTTCGCAGCGGAATACCTCACGGAGCAGAACTCAGAACTCACCTACATCC
AGATCAAGGCCGAAGTTCAAGTGGTCGCGGGCATGATGTACACGTTGCAC
TACCGCGGAAATGACGCCGCTGGCGAGTGTCTGGTGCGAAACCCGTCTCT
TTGTTGTCTGTTTCTCACCAAGCGACGTTTTACAGACGTTTGGCCAGCCG
TGCTCCCTATCTCGAGCGGCTATCTGGCTACGTTAGCGCCCCCACCGTGT
GCGCGGGCACACAAGTGCCGTTTGCTCGCGTCGTCCAAGCTAATTTATTT
TCCTGTTGCTTGTGGGCACTGTTGGACTCGCTTGCGGTGGAAGTCGCTTG
TGGTGGTTTACTCGTTTCGATAAGTTTGCTTTCACAAGCGACGAGAATAG
GGTGTCGTAGGTGCACGTGTTTCGACTCGTGTGTGTGTTCCGCTGTGTGT
TCCGCTGTTTGTTTCTCGATTACCATACACCGCTTGCTTGTGCCGTACGT
TCGGCGTTCGTTAGAAGGGCGTCTGGAGCCTGACATGTGCGCGCCCACCA
GAAAGCCTTCGGATTTGCGGCGCCCCCGAGTGACAGATCATGTTCGGTGG
TCGGCGTGACCGTATACACCGATCGCTTTCCTCTACGCTGAAGCCGCCGC
CGCCGCCGCCGCTGCTACTGCTCTTAATCCTTTTTGTCGCAGGAGGAACG
CACTCTCGTAGTTTACGACAAGCCATGGCTGGATGAACGCACCCTCAAGA
GTGACACGGTCACGGAATGTACGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1450:1766..4841+ >mRNA_E-siliculosus-1a_F_contig1450.2625.1 ID=mRNA_E-siliculosus-1a_F_contig1450.2625.1|Name=mRNA_E-siliculosus-1a_F_contig1450.2625.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=966bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1450:1766..4841+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGAGTTGGGCCCTTGCTTGCGCTGCTTCTGTCCGGACTGGGCTCCTC
CGTTTCCGCTCGGGAGACGACGAAGACAACAGTTTCGGACAAGGAAGCAG
CAGCAGCTGAGAAGCGCGGCGATCGGCCCGACAAAGCCACCAGACCCACC
TACCTGCACCCGCGTGACAAGATGAATGGCCGAGGCCCGGTCGCGTCGGC
GCCGTTGGCGGGGGCCAAGCAGGACGTGACGGGCTCGAACGACCAGCATC
TCAGCGAAGTCACTGAAATGAGAGTTGGGCCCTTGCTTGCGCTGCTTCTG
TCCGGACTGGGCTCCTCCGTTTCCGCTCGGGAGACGACGAAGACAACAGT
TTCGGACAAGGAAGCAGCAGCAGCTGAGAAGCGCGGCGATCGGCCCGACA
AAGCCACCAGACCCACCTACCTGCACCCGCGTGACAAGATGAATGGCCGA
GGCCCGGTCGCGTCGGCGCCGTTGGCGGGGGCCAAGCAGGACGTGACGGG
CTCGAACGACCAGCATCTCAGCGAAGTCACTGAATTCGCAGCGGAATACC
TCACGGAGCAGAACTCAGAACTCACCTACATCCAGATCAAGGCCGAAGTT
CAAGTGGTCGCGGGCATGATGTACACGTTGCACTACCGCGGAAATGACGC
CGCTGGCGAGTGTCTGTTCGCAGCGGAATACCTCACGGAGCAGAACTCAG
AACTCACCTACATCCAGATCAAGGCCGAAGTTCAAGTGGTCGCGGGCATG
ATGTACACGTTGCACTACCGCGGAAATGACGCCGCTGGCGAGTGTCTGGA
GGAACGCACTCTCGTAGTTTACGACAAGCCATGGCTGGATGAACGCACCC
TCAAGAGTGACACGGTCACGGAATGTACGTAGGAGGAACGCACTCTCGTA
GTTTACGACAAGCCATGGCTGGATGAACGCACCCTCAAGAGTGACACGGT
CACGGAATGTACGTAG back to top
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