mRNA_E-siliculosus-1a_F_contig1447.2612.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1447.2612.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI) HSP 1 Score: 627 bits (1617), Expect = 4.840e-225 Identity = 329/372 (88.44%), Postives = 340/372 (91.40%), Query Frame = 1
Query: 1 CQTFLWGGTGISTVGADGACRCACGDETWSEYSILGLPSCVPSKAHVVFGAVGVLMTMTSLVHAAYQLYRQVKYHRQVIAASTSSVEKCRRWLHIAVIVHAVIGLCYFGMVLLLDSERLWVSTIFMFGIGQTMMTISGILTVHMWIYCNDPRLIRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAAAKSLQAVCMVSAVAFLGLIVFCDFIILKSATALLRTVNKYLRNTVGRSERSNSIVAGTVGSLQLLKAARKNIKFALYFCVVVSLLTALFLMIGLFTTYGVTAPLIFFGIPYGFSPPAWFVFNVQLHAGRSRSRTGTDVVSGASSVIRKVSSVATRIVSRFKGAVFGSERSVVPAVAPSSP 1116
CQT LWGGTGISTVGADGACRCACG+ETWSEY+I+GLPSCVPSKAHVVFG VGVLM TSL H+AYQLYRQVK+HRQVI AS SSVEKCRRWLHI VI+HAVIGLCYFGMVLLLDSERLW+STIFM GQTMMTI GILTV MWIYCNDPRL RETPEILAISEALERPTGCFVSNTVMCVGPAIATVLA AKSLQA VSAVAFLGLIVFCDFIILKS TALLRTVNKYLRNTV RSERSNSIVAGTVGSL LLKAARKNIKFALYFC+VVSLLTA FLMI LFTTYG TAPLIFFGIPYGFSPP WFVFNVQLHAGRSRSRT TDVVSGASSVI KVSSVAT IVSR KGAV GS+R VVPA+ P+SP
Sbjct: 6 CQTILWGGTGISTVGADGACRCACGNETWSEYNIVGLPSCVPSKAHVVFGTVGVLMATTSLCHSAYQLYRQVKHHRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMLSAGQTMMTIGGILTVRMWIYCNDPRLTRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAVAKSLQAAGKVSAVAFLGLIVFCDFIILKSGTALLRTVNKYLRNTVERSERSNSIVAGTVGSLPLLKAARKNIKFALYFCLVVSLLTA-FLMICLFTTYGATAPLIFFGIPYGFSPPVWFVFNVQLHAGRSRSRTSTDVVSGASSVIWKVSSVATTIVSRVKGAVLGSKRFVVPALTPASP 376
BLAST of mRNA_E-siliculosus-1a_F_contig1447.2612.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE) HSP 1 Score: 608 bits (1568), Expect = 4.220e-217 Identity = 321/400 (80.25%), Postives = 341/400 (85.25%), Query Frame = 1
Query: 1 CQTFLWGGTGISTVGADGACRCACGDETWSEYSILGLPSCVPSKAHVVFGAVGVLMTMTSLVHAAYQLYRQVKYHRQVIAASTSSVEKCRRWLHIAVIVHAVIGLCYFGMVLLLDSERLWVSTIFMFGIGQTMMTISGILTVHMWIYC------------------------------NDPRLIRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAAAKSLQAVCMVSAVAFLGLIVFCDFIILKSATALLRTVNKYLRNTVGRSERSNSIVAGTVGSLQLLKAARKNIKFALYFCVVVSLLTALFLMIGLFTTYGVTAPLIFFGIPYGFSPPAWFVFNVQLHAGRSRSRTGTDVVSGASSVIRKVSSVATRIVSRFKGAVFGSERSVVPAVAPS 1110
CQT LWGGTGISTVGADG CRCACGDETWSEY+ILGLPSCVPSKAH VFGAVGV +TMTSL HAAYQLYRQVKYHRQ +AASTSSVEKCRRWLHI VI+HAVIGLCYFGMVLLLDSERLW+STIFMFGIGQ MMTI GILTV MW+YC NDPRLIRETPE+L ISEALERPTG FVSNTVMCVGPA+ATVLAAAKSLQA CMVSAVAFLGLIVFCDFIILK+ATALL+TVNKYLRN+V RSE+SNSI+AGTVGSLQLLKAARKNIKFALYFCVVVSLLT +MIGLFTTYG TAPLIF GIPYG SPP WFVFN+QLHAGRSR+RT DVVS ASSVIR+V SVATRIVSR KG VFG+ERSVVP + P+
Sbjct: 6 CQTSLWGGTGISTVGADGGCRCACGDETWSEYNILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQVKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIGGILTVRMWLYCLTSDEQRSPLQLNRFPYVSPLRNHILFLASNDPRLIRETPELLMISEALERPTGLFVSNTVMCVGPAVATVLAAAKSLQAACMVSAVAFLGLIVFCDFIILKTATALLQTVNKYLRNSVVRSEKSNSIMAGTVGSLQLLKAARKNIKFALYFCVVVSLLTFSIVMIGLFTTYGATAPLIFSGIPYGCSPPVWFVFNIQLHAGRSRNRTEPDVVSRASSVIRQVPSVATRIVSRAKGVVFGNERSVVPTLTPT 405
BLAST of mRNA_E-siliculosus-1a_F_contig1447.2612.1 vs. uniprot
Match: D7G622_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G622_ECTSI) HSP 1 Score: 115 bits (288), Expect = 3.020e-25 Identity = 98/334 (29.34%), Postives = 147/334 (44.01%), Query Frame = 1
Query: 277 LHIAVIVHAVIGLCYFGMVLLLDSERLWVSTIFMFGIGQTMMTISGILTVHMWIYCNDPRLIRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAAAKSLQAVCMVSAVAFLGLIVFCDFIILKSATALLRTVNKYLRNT-------VGRSERSNSIVAGTVGSLQL----------------------------------------------------LKAARKNIKFALYFCVVVSLLTALFLMIGLFTTYGVTAPLIFFGIPYGFSPPAWFVFNVQLHAGRSRSRTGTDVVSGASSVIRKVSSVATRIVSRFKGAVFGSERSVVPAV 1101
+H+ + +AV+ L YF +VLL+ + +S + + + Q +++ G LTV MWIY ND RL++ + +L IS LE G +S V+ GP +ATVLA +A + AV F+ LIVF D ALLR ++ L+N+ V +R S++A T+G + L+AA++ +++A+ FC +SL L+ +F+ YG + PLI FG+ P W FN+QLHAGRSR + I R G G R VVPAV
Sbjct: 1 MHVTAVANAVVSLFYFLLVLLVKARWHEISVLVVI-LNQITVSVCGFLTVRMWIYTNDARLMQASSTMLRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVFTDTTFWIFGRALLRAIDASLQNSRMRAMKSVFEEDRRESVLA-TLGGTEADEERGRRGSGXXXXXXXXXXSSSRTWSSVGPRRRGSWWGGEGRDESELGDGELQAAKRKVRWAMGFCAHMSLQGYAILLFSIFSKYGTSMPLILFGVQMTIVPLVWHAFNIQLHAGRSRG---------------------SAIGRRSSGVDRGGRRYVVPAV 311 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1447.2612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1447.2612.1 >prot_E-siliculosus-1a_F_contig1447.2612.1 ID=prot_E-siliculosus-1a_F_contig1447.2612.1|Name=mRNA_E-siliculosus-1a_F_contig1447.2612.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=373bp CQTFLWGGTGISTVGADGACRCACGDETWSEYSILGLPSCVPSKAHVVFGback to top mRNA from alignment at E-siliculosus-1a_F_contig1447:17173..19626- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1447.2612.1 ID=mRNA_E-siliculosus-1a_F_contig1447.2612.1|Name=mRNA_E-siliculosus-1a_F_contig1447.2612.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2454bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1447:17173..19626- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1447:17173..19626- >mRNA_E-siliculosus-1a_F_contig1447.2612.1 ID=mRNA_E-siliculosus-1a_F_contig1447.2612.1|Name=mRNA_E-siliculosus-1a_F_contig1447.2612.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2238bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1447:17173..19626- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |