mRNA_E-siliculosus-1a_F_contig14468.2611.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14468.2611.1
Unique NamemRNA_E-siliculosus-1a_F_contig14468.2611.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14468.2611.1 vs. uniprot
Match: D8LJH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH0_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 9.410e-68
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 2 
Query:  164 SSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCLISPWIGYPISYRRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNTATVLRPGECRGGC 484
            SSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCLISPWIGYPISY RDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNTATVLRPGECRGGC
Sbjct:    7 SSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCLISPWIGYPISYGRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNTATVLRPGECRGGC 113
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BLAST of mRNA_E-siliculosus-1a_F_contig14468.2611.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.960e-19
Identity = 49/119 (41.18%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:    1 MHHERWLGFSANGKEVGTGDGFSPHRLFFQGSVRIESLPSYKLKTVDPHTIHMIKQRFEASHSRMAAAFPGDPARVQALKQEQRRQLLLLERKGHLLPDLPVDWLPDIVPEGCDDSDEG 357
            MHHE WLGFS +GK VG+G GFSP RL    +V +E+ P Y+LK V    IH +  R +AS  ++  A+ GDP + + +K +    L +L   G    DL   WLP  V     +SD G
Sbjct:  344 MHHEDWLGFSEDGKTVGSGAGFSPWRLMHAHAVHLEATPPYELKLVQDDVIHRVDMRQQASWEKLPVAYVGDPEKQKRVKLDHADSLRILRTTGTKAFDLDTSWLPLQVSGDDSESDPG 462
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BLAST of mRNA_E-siliculosus-1a_F_contig14468.2611.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.680e-18
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    1 MHHERWLGFSANGKEVGTGDGFSPHRLFFQGSVRIESLPSYKLKTVDPHTIHMIKQRFEASHSRMAAAFPGDPARVQALKQEQRRQLLLLERKGHLLPDLPVDWLPDIVP 330
            +HH+ WLGFSA+GK VGTG GF+  RL  +  VR+E  PSY LKTVD   I  I+ R EAS  R+ A    DP +V+A   +  R L +  R+     DL  +WLPD  P
Sbjct:  614 LHHDDWLGFSADGKTVGTGAGFTGWRLMRERDVRLEETPSYLLKTVDEEIIRKIQTRQEASWKRLPAFVSLDPEQVKAQHLDSLRVLRMQGRRNF---DLETNWLPDSFP 720
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BLAST of mRNA_E-siliculosus-1a_F_contig14468.2611.1 vs. uniprot
Match: A0A6H5L233_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L233_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.560e-8
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 MHHERWLGFSANGKEVGTGDGFSPHRLFFQGSVRIESLPSYKLKTVDPHTIHMIKQRFEASHSRMAAAFPG 213
            MHHE WLGFS +GK VG+  GF P RL    +V +++ P Y+LK V    IH    R +AS   +  A  G
Sbjct:  161 MHHEDWLGFSEDGKTVGSRAGFRPWRLMHAHAVYLKATPPYELKLVQDEIIHRGDLRQQASWENLPVANAG 231
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14468.2611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJH0_ECTSI9.410e-6899.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL03_9PHAE8.960e-1941.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE1.680e-1846.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L233_9PHAE9.560e-843.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14468contigE-siliculosus-1a_F_contig14468:175..905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size486
Model size487
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927956.353156-CDS-E-siliculosus-1a_F_contig14468:174..3881622927956.353156-CDS-E-siliculosus-1a_F_contig14468:174..388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14468 175..388 +
1696318752.6993399-CDS-E-siliculosus-1a_F_contig14468:174..3881696318752.6993399-CDS-E-siliculosus-1a_F_contig14468:174..388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14468 175..388 +
1622927956.3645725-CDS-E-siliculosus-1a_F_contig14468:633..9051622927956.3645725-CDS-E-siliculosus-1a_F_contig14468:633..905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14468 634..905 +
1696318752.7072363-CDS-E-siliculosus-1a_F_contig14468:633..9051696318752.7072363-CDS-E-siliculosus-1a_F_contig14468:633..905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14468 634..905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14468.2611.1prot_E-siliculosus-1a_F_contig14468.2611.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14468 175..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14468.2611.1

>prot_E-siliculosus-1a_F_contig14468.2611.1 ID=prot_E-siliculosus-1a_F_contig14468.2611.1|Name=mRNA_E-siliculosus-1a_F_contig14468.2611.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp
MHHERWLGFSANGKEVGTGDGFSPHRLFFQGSVRIESLPSYKLKTVDPHT
IHMIKQRFEASHSRMAAAFPGDPARVQALKQEQRRQLLLLERKGHLLPDL
PVDWLPDIVPEGCDDSDEGLHVGGNDDGASDTDEIQSDHDSSEDEDEHGH
CAAAGRVQGRLP
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mRNA from alignment at E-siliculosus-1a_F_contig14468:175..905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14468.2611.1 ID=mRNA_E-siliculosus-1a_F_contig14468.2611.1|Name=mRNA_E-siliculosus-1a_F_contig14468.2611.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=731bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14468:175..905+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACCATGAGCGTTGGTTAGGATTCAGCGCAAACGGGAAGGAGGTGGG
GACGGGAGACGGATTTTCTCCGCATAGGCTGTTCTTCCAAGGCTCTGTGC
GCATCGAAAGCTTACCTTCATACAAGCTCAAGACGGTGGACCCCCATACG
ATTCACATGATCAAGCAGCGGTTCGAGGCGTCTCATTCGAGGATGGCGGC
GGCGTTCCCGGGCGGTGAGTACACATATGAAAAAGGCTGCTGTTACTGTT
AAATTGGCTACCATCTGGGTCCCCTCGGGGCTACCTTCTGATGTCCTCTA
CGGCTATTTTCTGTTTATTTTTTTATACAATGCTAGAGATACTCAACGTT
ACTGACTGCTATCAACAGTAGGTACACGTTTTAGTCGTGGTGTTGTCAAT
TCGACAAACTCGTGTGCCACTTCCCTTGACGTATTCATTTGTTCCGGTTC
TCTCCTCAGATCCAGCCCGAGTCCAGGCGCTCAAACAAGAGCAAAGGCGG
CAACTTCTTCTCCTTGAGAGGAAGGGCCATCTTCTGCCTGATCTCCCCGT
GGATTGGCTACCCGATATCGTACCGGAGGGATGCGACGACTCCGACGAAG
GCCTGCACGTTGGAGGAAATGACGACGGCGCCAGCGACACAGACGAAATC
CAATCTGACCACGACAGTTCTGAAGACGAAGACGAACACGGCCACTGTGC
TGCGGCCGGGAGAGTGCAGGGGCGGTTGCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14468:175..905+

>mRNA_E-siliculosus-1a_F_contig14468.2611.1 ID=mRNA_E-siliculosus-1a_F_contig14468.2611.1|Name=mRNA_E-siliculosus-1a_F_contig14468.2611.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14468:175..905+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACCATGAGCGTTGGTTAGGATTCAGCGCAAACGGGAAGGAGGTGGG
GACGGGAGACGGATTTTCTCCGCATAGGCTGTTCTTCCAAGGCTCTGTGC
GCATCGAAAGCTTACCTTCATACAAGCTCAAGACGGTGGACCCCCATACG
ATTCACATGATCAAGCAGCGGTTCGAGGCGTCTCATTCGAGGATGGCGGC
GGCGTTCCCGGGCGATGCACCATGAGCGTTGGTTAGGATTCAGCGCAAAC
GGGAAGGAGGTGGGGACGGGAGACGGATTTTCTCCGCATAGGCTGTTCTT
CCAAGGCTCTGTGCGCATCGAAAGCTTACCTTCATACAAGCTCAAGACGG
TGGACCCCCATACGATTCACATGATCAAGCAGCGGTTCGAGGCGTCTCAT
TCGAGGATGGCGGCGGCGTTCCCGGGCGATCCAGCCCGAGTCCAGGCGCT
CAAACAAGAGCAAAGGCGGCAACTTCTTCTCCTTGAGAGGAAGGGCCATC
TTCTGCCTGATCTCCCCGTGGATTGGCTACCCGATATCGTACCGGAGGGA
TGCGACGACTCCGACGAAGGCCTGCACGTTGGAGGAAATGACGACGGCGC
CAGCGACACAGACGAAATCCAATCTGACCACGACAGTTCTGAAGACGAAG
ACGAACACGGCCACTGTGCTGCGGCCGGGAGAGTGCAGGGGCGGTTGCCG
ATCCAGCCCGAGTCCAGGCGCTCAAACAAGAGCAAAGGCGGCAACTTCTT
CTCCTTGAGAGGAAGGGCCATCTTCTGCCTGATCTCCCCGTGGATTGGCT
ACCCGATATCGTACCGGAGGGATGCGACGACTCCGACGAAGGCCTGCACG
TTGGAGGAAATGACGACGGCGCCAGCGACACAGACGAAATCCAATCTGAC
CACGACAGTTCTGAAGACGAAGACGAACACGGCCACTGTGCTGCGGCCGG
GAGAGTGCAGGGGCGGTTGCCG
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