mRNA_E-siliculosus-1a_F_contig1445.2602.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1445.2602.1
Unique NamemRNA_E-siliculosus-1a_F_contig1445.2602.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: D8LSC2_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC2_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.000e-47
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLLDCD 252
            GLQERSLSA LRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGY DRSFLLHTPEQVRMLLDCD
Sbjct:  283 GLQERSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYADRSFLLHTPEQVRMLLDCD 366          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: W7T6J5_9STRA (Conserved oligomeric Golgi complex subunit 6 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6J5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.070e-17
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDR-SFLLHTPEQVRMLLDCD 252
            GL   S++  + +FY  LFTL  P FERL++P  RA AR+ T+ ++A+ HE  H L  R +SGY D  +FL HTPEQV++LLDCD
Sbjct:  636 GLDSESVTRTMEAFYRGLFTL--PQFERLQQPALRARARQQTSAIIAQRHEKAHALFRRAESGYPDHETFLAHTPEQVKILLDCD 718          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.380e-16
Identity = 38/85 (44.71%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDR-SFLLHTPEQVRMLLDCD 252
            GL+  ++++A+ +FYS+LF+L MP+ ER+R P  +  AR+ ++  +A+AH  +H ++S   +GY D  SFL HTP+QVR++LDCD
Sbjct:  588 GLEAHTVASAMAAFYSALFSLTMPELERVRAPLVKGRARQLSSRQIADAHAHLHGVLSAPAAGYRDAASFLSHTPDQVRIILDCD 672          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.140e-15
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLLDC 249
            GL   S+  A+  FYS++F L +P FERL     R  AR+  A  +A AH++V+ LV    + Y D SFL HTPEQVRMLLDC
Sbjct:  646 GLDAASVERAMLDFYSTIFALAVPSFERLAPLEVREAARKGVAERIANAHQSVYNLVKDPANKYGDSSFLQHTPEQVRMLLDC 728          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.260e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVD----RSFLLHTPEQVRMLLD 246
            G+   SL +AL SFY SLF+LVMP+F+RL  P  RA AR +TA  +A ++E  +  V  ++   +D    +  LLH P+QVR L+D
Sbjct:  555 GMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLRASARNATAQTIANSYEAFYNAVMDKERSGIDEASLKGILLHNPQQVRQLVD 640          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7R9UAD7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAD7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.560e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   16 SLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLLD 246
            ++   + +F  +LFT+ +PDFER+  P  +  AR  T   VA+ + T+  +V  E  GY DRSFL+H PEQVR+LLD
Sbjct:  336 AVRVVIDAFNGALFTIFVPDFERITDPDEKNTARVDTMTKVADGYATIWEMVMDEKQGYADRSFLVHAPEQVRILLD 412          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: B8BWC7_THAPS (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWC7_THAPS)

HSP 1 Score: 65.9 bits (159), Expect = 1.190e-10
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLL 243
            GL +  + AA++ FYSSLF+  +P FE ++ P  R  AR  TA+ V + +  ++  ++ E  GY D +FL H P+QV+ LL
Sbjct:  793 GLSQSEVEAAMKQFYSSLFSPPIPTFEEIKDPELRKFARSKTALRVVDVYRELYDAMTSEKGGYADFAFLGHEPDQVKTLL 873          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A8J2SC57_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC57_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.600e-10
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    4 LQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSG-YVDRSFLLHTPEQVRMLLD 246
            +   +LSAALR+FYS+LF    PD   +     RA+A+   A ++A AH +V+ L + E +G Y +  FL+H+P+QVR+LLD
Sbjct:  625 ISRETLSAALRAFYSALFQDPAPDLGAIAPDARRAEAKSLCAKILAHAHASVYALAADEGTGGYGETDFLVHSPDQVRVLLD 706          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7S3LLI7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLI7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.900e-10
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSF---LLHTPEQV-RMLLD 246
            G+   SL AA   FY S+F++VMP+F+RL  P  R  AR STA  +A  +  ++  +S  +SGY        L+H PEQV + +LD
Sbjct:  333 GMDPASLQAAFSKFYQSMFSMVMPEFDRLNNPRLRTTARNSTARSIAMGYVRLYNALSNPESGYSKEELERILVHAPEQVSKYILD 418          
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A2R5GVE9_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVE9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.660e-9
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHR-LVSREDSGYVDR---SFLLHTPEQVRMLLD 246
            G+   +L   L SFY S+F+LVMP+F+RL  P  RA AR +TA  +A  +E  +  L     SGY      + LLH P+QVR LLD
Sbjct:  601 GMTLDALREVLDSFYKSMFSLVMPEFDRLSSPRLRASARNATAGAIAATYEQFYATLQDLSRSGYQPAQLSNILLHDPQQVRQLLD 686          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LSC2_ECTSI3.000e-4797.62Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
W7T6J5_9STRA1.070e-1750.59Conserved oligomeric Golgi complex subunit 6 n=5 T... [more]
A0A836CBI3_9STRA8.380e-1644.71Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2S2C7_9STRA2.140e-1549.40Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2SLV6_9STRA4.260e-1344.19Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7R9UAD7_9STRA2.560e-1244.16Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
B8BWC7_THAPS1.190e-1039.51Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A8J2SC57_9STRA1.600e-1042.68Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S3LLI7_9STRA3.900e-1040.70Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A2R5GVE9_9STRA2.660e-944.19Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1445contigE-siliculosus-1a_F_contig1445:65..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size255
Model size255
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG3758@1,KOG3758@2759
EggNOG free text desc.intra-Golgi vesicle-mediated transport
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
KEGG koko:K20293
Preferred nameCOG6
Seed eggNOG ortholog2880.D8LSC2
Seed ortholog evalue2.2e-38
Seed ortholog score164.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.097439-CDS-E-siliculosus-1a_F_contig1445:64..2921622927955.097439-CDS-E-siliculosus-1a_F_contig1445:64..292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1445 65..292 +
1696318752.0692253-CDS-E-siliculosus-1a_F_contig1445:64..2921696318752.0692253-CDS-E-siliculosus-1a_F_contig1445:64..292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1445 65..292 +
1622927955.1131737-CDS-E-siliculosus-1a_F_contig1445:591..6181622927955.1131737-CDS-E-siliculosus-1a_F_contig1445:591..618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1445 592..618 +
1696318752.0788212-CDS-E-siliculosus-1a_F_contig1445:591..6181696318752.0788212-CDS-E-siliculosus-1a_F_contig1445:591..618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1445 592..618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1445.2602.1prot_E-siliculosus-1a_F_contig1445.2602.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1445 65..618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1445.2602.1

>prot_E-siliculosus-1a_F_contig1445.2602.1 ID=prot_E-siliculosus-1a_F_contig1445.2602.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=85bp
GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAH
ETVHRLVSREDSGYVDRSFLLHTPEQVRMLLDCD*
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mRNA from alignment at E-siliculosus-1a_F_contig1445:65..618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1445.2602.1 ID=mRNA_E-siliculosus-1a_F_contig1445.2602.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1445:65..618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCTACAGGAGCGGTCGCTCTCCGCCGCGCTCCGATCCTTCTACTCGTC GCTCTTCACCCTCGTCATGCCGGACTTCGAGAGGCTCCGCCGCCCGGGCA CGAGAGCGGACGCGAGGAGATCCACCGCGATGCTCGTCGCCGAGGCACAC GAGACGGTGCACCGCCTCGTGTCCAGGGAGGACAGCGGCTATGTCGACCG GTCGTTCTTGCTGCACACCCCGGAGCAGGTGGGCCGCGGGGCAGCGTCTG AGCTTCGTTCTCGCCGCAGGGGGGAACGTTCGTTCTTTGTGAAGGGCTTG TGGTTATTGAATGCACCTCTCACCACGAAAAATGGGGGGACTGTCGCCAT AATAAATAGGACGAAAACACACACACACACACACACACACACACACACCT GCTTGCTCTCATGCGCGCCAAACATCCAATCTCACGTCGCGCGTGTGCGG TCGTACGGTTGTTCTCCTTCTCTCTACTCTGCCCCGCCCGCCCTTGCTCG TCCGTTTCGTGTCCGCGTGTGTACAAGGTGCGCATGCTGCTTGATTGTGA CTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1445:65..618+

>mRNA_E-siliculosus-1a_F_contig1445.2602.1 ID=mRNA_E-siliculosus-1a_F_contig1445.2602.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1445:65..618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCTACAGGAGCGGTCGCTCTCCGCCGCGCTCCGATCCTTCTACTCGTC
GCTCTTCACCCTCGTCATGCCGGACTTCGAGAGGCTCCGCCGCCCGGGCA
CGAGAGCGGACGCGAGGAGATCCACCGCGATGCTCGTCGCCGAGGCACAC
GAGACGGTGCACCGCCTCGTGTCCAGGGAGGACAGCGGCTATGTCGACCG
GTCGTTCTTGCTGCACACCCCGGAGCAGGGGCTACAGGAGCGGTCGCTCT
CCGCCGCGCTCCGATCCTTCTACTCGTCGCTCTTCACCCTCGTCATGCCG
GACTTCGAGAGGCTCCGCCGCCCGGGCACGAGAGCGGACGCGAGGAGATC
CACCGCGATGCTCGTCGCCGAGGCACACGAGACGGTGCACCGCCTCGTGT
CCAGGGAGGACAGCGGCTATGTCGACCGGTCGTTCTTGCTGCACACCCCG
GAGCAGGTGCGCATGCTGCTTGATTGTGACTAGGTGCGCATGCTGCTTGA
TTGTGACTAG
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