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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1444.2598.1 vs. uniprot
Match: A0A6H5KWT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT0_9PHAE) HSP 1 Score: 240 bits (612), Expect = 3.260e-73 Identity = 134/193 (69.43%), Postives = 141/193 (73.06%), Query Frame = 1
Query: 1075 KDAIGDVLALAQKGGGAEEVRRPSPVRRLIGECKTAVVVHEGGAVEGAPGVAPRLEKDVAITNAQDGHDVVVGTAGTGDGQDGRGGLQEKCEEQQHRVPELSSLTPSTKMEKATKKSWWGGPRTPNRKIRHPCKIPPRELVPEQAQEQRREQPEEPVHESELPAAAFPATSNRAAPERRSWLSFKWNRRNISA 1653
KDAIGDV A+AQKGGGAE RRPS VRR GECKTAVVVHEGGAVEGAPGV LEK+ AITNAQDGH VVV AGTGDGQDGRGGL+EK EEQQHR PELSSLTPSTK PP+E VPEQA+ PVHESELPAAA PAT+NRAAPERRSWLSFKWNRRN+SA
Sbjct: 13 KDAIGDVPAVAQKGGGAEVGRRPSLVRRFSGECKTAVVVHEGGAVEGAPGVTITLEKEAAITNAQDGHGVVVEKAGTGDGQDGRGGLKEKLEEQQHRAPELSSLTPSTKS-------------------------PPQERVPEQAEXXXXXXXXXPVHESELPAAASPATTNRAAPERRSWLSFKWNRRNVSA 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1635 |
| Model size | 1656 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927954.926013-UTR-E-siliculosus-1a_F_contig1444:20088..20109 | 1622927954.926013-UTR-E-siliculosus-1a_F_contig1444:20088..20109 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1444 20089..20109 - |
| 1696318752.0078166-UTR-E-siliculosus-1a_F_contig1444:20088..20109 | 1696318752.0078166-UTR-E-siliculosus-1a_F_contig1444:20088..20109 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1444 20089..20109 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1444.2598.1 >prot_E-siliculosus-1a_F_contig1444.2598.1 ID=prot_E-siliculosus-1a_F_contig1444.2598.1|Name=mRNA_E-siliculosus-1a_F_contig1444.2598.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=545bp
MESFTETKALGEEMADNLWGTGQRDFRAVTGGTEASDGSDFTPEQLAVMR
KRFSVQGMPLPDGVEHVEWQPPASTGLEHSSAIFNTISDQEGVLRRSSAG
LNKDNCHFRSWQEDNGVAKTFASDTVVKDVDGVTRSVTIARGFPQLAGRS
KSMPPADLRSSHARAQSKAIRPVVRPGTRIVSPSMGMPFRRAKPGPVSAT
EGSGQGRLQFTEEDENGSDESESPMPPGPSKDTVKGVEEGKELSENGRDS
AVGETGAETSDGSSKQTSLMARRPSCTSSNVAGDAPEITDGTKDSPQLED
GATDRVTTGPSLPSCTDGSKQACSQTPRRPSSGPASFHALHQPQNRRSLR
HKDAIGDVLALAQKGGGAEEVRRPSPVRRLIGECKTAVVVHEGGAVEGAP
GVAPRLEKDVAITNAQDGHDVVVGTAGTGDGQDGRGGLQEKCEEQQHRVP
ELSSLTPSTKMEKATKKSWWGGPRTPNRKIRHPCKIPPRELVPEQAQEQR
REQPEEPVHESELPAAAFPATSNRAAPERRSWLSFKWNRRNISA* back to topmRNA from alignment at E-siliculosus-1a_F_contig1444:17294..20109- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1444.2598.1 ID=mRNA_E-siliculosus-1a_F_contig1444.2598.1|Name=mRNA_E-siliculosus-1a_F_contig1444.2598.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1444:17294..20109- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCCGACAGGCCGTGCGAGCATGGAGAGCTTTACCGAGACCAAGGCCCT
CGGTGAAGAAATGGCAGACAACCTTTGGGGCACCGGCCAACGGGATTTCA
GAGCCGTCACGGGCGGGACCGAAGCATCAGATGGATCGGATTTCACTCCC
GAGCAGCTGGCGGTGATGAGGAAGAGATTTTCCGTTCAAGGCATGCCTCT
CCCAGATGGCGTCGAGCACGTGGAATGGCAACCGCCAGCGTCGACAGGAC
TCGAACATTCCAGCGCCATATTCAATACAATATCGGACCAGGAAGGGGTG
CTACGACGCTCCAGCGCAGGATTGAACAAGGACAATTGCCATTTTCGGAG
TTGGCAAGAGGACAACGGTGTCGCCAAGACGTTCGCCTCCGACACGGTTG
TGAAAGATGTCGACGGCGTGACACGGAGCGTGACCATCGCTCGTGGGTTT
CCTCAGCTGGCAGGGCGCTCAAAATCGATGCCGCCGGCCGATCTGCGTTC
TTCCCATGCAAGAGCGCAATCAAAAGCCATCCGGCCGGTTGTCCGTCCCG
GTACGAGGATTGTTTCGCCTTCTATGGGAATGCCCTTTCGGAGGGCGAAA
CCCGGACCAGTATCTGCGACGGAAGGAAGCGGTCAAGGCAGGTTGCAATT
CACCGAGGAGGACGAAAATGGGTCCGACGAAAGCGAATCACCTATGCCAC
CAGGTCCTTCGAAAGACACGGTCAAGGGCGTAGAGGAGGGAAAGGAATTG
AGTGAAAACGGGAGGGATTCTGCGGTCGGGGAGACTGGCGCTGAGACTTC
CGACGGGTCCAGCAAGCAAACCTCCTTGATGGCGCGACGCCCTTCGTGTA
CTTCATCGAATGTTGCAGGTGACGCACCAGAGATAACCGACGGTACGAAA
GATTCACCGCAATTAGAGGATGGTGCGACAGACAGGGTCACTACTGGGCC
GTCGCTGCCTTCTTGTACGGATGGGTCGAAGCAAGCCTGTTCGCAAACAC
CACGGCGCCCTTCAAGCGGTCCCGCCAGCTTTCACGCGCTTCATCAACCA
CAGAATAGGCGGTCACTTCGCCACAAGGTGCCACCCAACCCAAGTCTTTG
TTGTTGCTGTTGTTGCTGTTGTTGTTGTTGTCTTCACAATGAAGAAAACC
GTTCCGATCTCTCTGCGCGATGCCTCCATCTGTCCGTGCTGATCTGCCAT
TTGACGCGGTCGATTCCCATCGTCACAGGCCAACTTACCCTAAAATGGGT
ATACCCAAAAGAAATGAGGGTCCGCAACACCATATGCTAGTTGCAAATTT
CTATTTGTTTGGTTGACATCACATAGTGGGTGGTTGCTTCACCGAGAGGT
ACCATACTCCCACCTACACATTAGCATTTGGTTGGGTGACACGGAGCTGA
TTCCACAACAGGGCGTCATTTTGCTTCAGTACGAAGTGCAAACCGATGCT
ATTTCGTAAACGTGGTTCTGGCCTCGGCTGCTGCTAAATTGGCATGAACA
TCATGGCTGGGGACAGGGTGAACGGAACCACCTGCGTTCTGTGATTTACG
ATCGCCGGGATGTTGTACTGGTTCATAAGACTCGCTACTCTTAGAGTCAC
CTGTCTCAGTGATTTCCTGCGCACTTCTTTACGAATGCTGTTGGTATGGA
AATCCGCAACGTACCCAGGATGCCATTGGCGATGTGCTGGCTTTGGCACA
GAAAGGAGGAGGAGCCGAGGAAGTACGCCGACCTTCTCCTGTGCGCCGGT
TGATCGGGGAATGCAAAACGGCAGTGGTTGTTCACGAGGGTGGTGCTGTC
GAGGGCGCCCCGGGTGTCGCACCCAGGCTAGAGAAGGACGTTGCTATCAC
CAACGCTCAGGATGGACATGACGTTGTGGTTGGGACAGCGGGGACGGGTG
ATGGCCAAGACGGGCGGGGAGGCCTACAGGAGAAATGTGAAGAACAGCAA
CACAGGGTCCCCGAACTGTCGAGCTTGACTCCGAGTACAAAGGTGGGGGG
GGTAAAATGACAGATTGCGACATGATGACATGCCTGTTGGCTGAATTGGA
GGATAACCCAAGGTGGTTGTAAATGCCGATTTTTTGATACCACAACCTTC
AGTTGAATGGAGCCCGTATGGGAACTTCCTCATGTTTCGTTGAGTACACT
TGTATTCCTGGAAATTTTCGTTGATACTTGGGGTTTTGGAAGAGCCCAAA
CACACACGGCGGTGGACAGACGCGACAGACCGAAACAAACTTGTTGGCGT
CGCAATCAAGCTGGAGGTCGACTATGCATGTCCTGTATGACTGGCACAAG
AACCTTCCTCATGGTGGAACAAGCTGTTGATGCCAAGGGGCGCACAGTTC
TACATACATCAGTGATGCAATGCTACCCTGCACACAGCAGTATTGCATGG
GCAACAGGCGTGTGCTTCATCCGGAAAAACCTGTGTCACCGCTGCGTAGT
TGCCTGGTCGAACTGGCTCGCTGGATTGGCTCGCTTTGCAAGAATGTTGT
ATTCTTTCAACGTCTTTGCCCCTGTGCGTCGATGCATGGACCGATAACCT
GCCCCACACAGATGGAGAAAGCAACGAAGAAATCGTGGTGGGGTGGACCA
CGAACTCCCAATAGAAAGATTCGACACCCGTGTAAAATACCGCCAAGGGA
ACTGGTTCCAGAACAAGCCCAAGAACAGCGCCGAGAACAGCCCGAAGAAC
CAGTCCATGAGAGCGAGCTCCCGGCGGCAGCCTTTCCTGCCACTTCAAAC
CGTGCAGCTCCCGAACGCAGGTCGTGGCTCAGCTTTAAGTGGAATCGGAG
GAATATTTCGGCGTAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1444:17294..20109- >mRNA_E-siliculosus-1a_F_contig1444.2598.1 ID=mRNA_E-siliculosus-1a_F_contig1444.2598.1|Name=mRNA_E-siliculosus-1a_F_contig1444.2598.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1444:17294..20109- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGAGCTTTACCGAGACCAAGGCCCTCGGTGAAGAAATGGCAGACAA
CCTTTGGGGCACCGGCCAACGGGATTTCAGAGCCGTCACGGGCGGGACCG
AAGCATCAGATGGATCGGATTTCACTCCCGAGCAGCTGGCGGTGATGAGG
AAGAGATTTTCCGTTCAAGGCATGCCTCTCCCAGATGGCGTCGAGCACGT
GGAATGGCAACCGCCAGCGTCGACAGGACTCGAACATTCCAGCGCCATAT
TCAATACAATATCGGACCAGGAAGGGGTGCTACGACGCTCCAGCGCAGGA
TTGAACAAGGACAATTGCCATTTTCGGAGTTGGCAAGAGGACAACGGTGT
CGCCAAGACGTTCGCCTCCGACACGGTTGTGAAAGATGTCGACGGCGTGA
CACGGAGCGTGACCATCGCTCGTGGGTTTCCTCAGCTGGCAGGGCGCTCA
AAATCGATGCCGCCGGCCGATCTGCGTTCTTCCCATGCAAGAGCGCAATC
AAAAGCCATCCGGCCGGTTGTCCGTCCCGGTACGAGGATTGTTTCGCCTT
CTATGGGAATGCCCTTTCGGAGGGCGAAACCCGGACCAGTATCTGCGACG
GAAGGAAGCGGTCAAGGCAGGTTGCAATTCACCGAGGAGGACGAAAATGG
GTCCGACGAAAGCGAATCACCTATGCCACCAGGTCCTTCGAAAGACACGG
TCAAGGGCGTAGAGGAGGGAAAGGAATTGAGTGAAAACGGGAGGGATTCT
GCGGTCGGGGAGACTGGCGCTGAGACTTCCGACGGGTCCAGCAAGCAAAC
CTCCTTGATGGCGCGACGCCCTTCGTGTACTTCATCGAATGTTGCAGGTG
ACGCACCAGAGATAACCGACGGTACGAAAGATTCACCGCAATTAGAGGAT
GGTGCGACAGACAGGGTCACTACTGGGCCGTCGCTGCCTTCTTGTACGGA
TGGGTCGAAGCAAGCCTGTTCGCAAACACCACGGCGCCCTTCAAGCGGTC
CCGCCAGCTTTCACGCGCTTCATCAACCACAGAATAGGCGGTCACTTCGC
CACAAGATGGAGAGCTTTACCGAGACCAAGGCCCTCGGTGAAGAAATGGC
AGACAACCTTTGGGGCACCGGCCAACGGGATTTCAGAGCCGTCACGGGCG
GGACCGAAGCATCAGATGGATCGGATTTCACTCCCGAGCAGCTGGCGGTG
ATGAGGAAGAGATTTTCCGTTCAAGGCATGCCTCTCCCAGATGGCGTCGA
GCACGTGGAATGGCAACCGCCAGCGTCGACAGGACTCGAACATTCCAGCG
CCATATTCAATACAATATCGGACCAGGAAGGGGTGCTACGACGCTCCAGC
GCAGGATTGAACAAGGACAATTGCCATTTTCGGAGTTGGCAAGAGGACAA
CGGTGTCGCCAAGACGTTCGCCTCCGACACGGTTGTGAAAGATGTCGACG
GCGTGACACGGAGCGTGACCATCGCTCGTGGGTTTCCTCAGCTGGCAGGG
CGCTCAAAATCGATGCCGCCGGCCGATCTGCGTTCTTCCCATGCAAGAGC
GCAATCAAAAGCCATCCGGCCGGTTGTCCGTCCCGGTACGAGGATTGTTT
CGCCTTCTATGGGAATGCCCTTTCGGAGGGCGAAACCCGGACCAGTATCT
GCGACGGAAGGAAGCGGTCAAGGCAGGTTGCAATTCACCGAGGAGGACGA
AAATGGGTCCGACGAAAGCGAATCACCTATGCCACCAGGTCCTTCGAAAG
ACACGGTCAAGGGCGTAGAGGAGGGAAAGGAATTGAGTGAAAACGGGAGG
GATTCTGCGGTCGGGGAGACTGGCGCTGAGACTTCCGACGGGTCCAGCAA
GCAAACCTCCTTGATGGCGCGACGCCCTTCGTGTACTTCATCGAATGTTG
CAGGTGACGCACCAGAGATAACCGACGGTACGAAAGATTCACCGCAATTA
GAGGATGGTGCGACAGACAGGGTCACTACTGGGCCGTCGCTGCCTTCTTG
TACGGATGGGTCGAAGCAAGCCTGTTCGCAAACACCACGGCGCCCTTCAA
GCGGTCCCGCCAGCTTTCACGCGCTTCATCAACCACAGAATAGGCGGTCA
CTTCGCCACAAGGATGCCATTGGCGATGTGCTGGCTTTGGCACAGAAAGG
AGGAGGAGCCGAGGAAGTACGCCGACCTTCTCCTGTGCGCCGGTTGATCG
GGGAATGCAAAACGGCAGTGGTTGTTCACGAGGGTGGTGCTGTCGAGGGC
GCCCCGGGTGTCGCACCCAGGCTAGAGAAGGACGTTGCTATCACCAACGC
TCAGGATGGACATGACGTTGTGGTTGGGACAGCGGGGACGGGTGATGGCC
AAGACGGGCGGGGAGGCCTACAGGAGAAATGTGAAGAACAGCAACACAGG
GTCCCCGAACTGTCGAGCTTGACTCCGAGTACAAAGGATGCCATTGGCGA
TGTGCTGGCTTTGGCACAGAAAGGAGGAGGAGCCGAGGAAGTACGCCGAC
CTTCTCCTGTGCGCCGGTTGATCGGGGAATGCAAAACGGCAGTGGTTGTT
CACGAGGGTGGTGCTGTCGAGGGCGCCCCGGGTGTCGCACCCAGGCTAGA
GAAGGACGTTGCTATCACCAACGCTCAGGATGGACATGACGTTGTGGTTG
GGACAGCGGGGACGGGTGATGGCCAAGACGGGCGGGGAGGCCTACAGGAG
AAATGTGAAGAACAGCAACACAGGGTCCCCGAACTGTCGAGCTTGACTCC
GAGTACAAAGATGGAGAAAGCAACGAAGAAATCGTGGTGGGGTGGACCAC
GAACTCCCAATAGAAAGATTCGACACCCGTGTAAAATACCGCCAAGGGAA
CTGGTTCCAGAACAAGCCCAAGAACAGCGCCGAGAACAGCCCGAAGAACC
AGTCCATGAGAGCGAGCTCCCGGCGGCAGCCTTTCCTGCCACTTCAAACC
GTGCAGCTCCCGAACGCAGGTCGTGGCTCAGCTTTAAGTGGAATCGGAGG
AATATTTCGGCGTAAATGGAGAAAGCAACGAAGAAATCGTGGTGGGGTGG
ACCACGAACTCCCAATAGAAAGATTCGACACCCGTGTAAAATACCGCCAA
GGGAACTGGTTCCAGAACAAGCCCAAGAACAGCGCCGAGAACAGCCCGAA
GAACCAGTCCATGAGAGCGAGCTCCCGGCGGCAGCCTTTCCTGCCACTTC
AAACCGTGCAGCTCCCGAACGCAGGTCGTGGCTCAGCTTTAAGTGGAATC
GGAGGAATATTTCGGCGTAA back to top
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