mRNA_E-siliculosus-1a_F_contig1441.2583.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2583.1 vs. uniprot
Match: D7G8L6_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L6_ECTSI) HSP 1 Score: 768 bits (1984), Expect = 4.580e-275 Identity = 383/407 (94.10%), Postives = 391/407 (96.07%), Query Frame = 1
Query: 1 MWVAWRSFYIVYSCGILEQWGYLAAPTNPTTSTSILRNSTNNSTGRSEPVAQRDAPDVETGEKSDTFSTSEAEDTRPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETVPKAKYADDVVLPLHKCLCQKKDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKKRLLKKKQYQSPRGQQKFRTDLEKIWVNCCKYAGYKPGSSDDRAGIVTCTLILETMIERYYADYMEQQELVVDEGSWQAGRERRKREQFARIAHTPLNPALWPNGTCADQLDPVDGTDEETDSDDENMRIGDSVSHKRKFGSDSSEGQAALNTTAHASNSSAPLVDGAGSSAGGRFACNVEGLDQNMCALAAIGENLGGSSSKR 1221
MWVAWRSFYIVYSCGILEQWGYL APTNPTTSTSI+R+STNNSTG SEPVAQRD PDVETGEKSDTFSTSEAEDTRPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETVPK KYADDVVLPLHKCLCQ KDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVE NPGYLGVVTREDMMDLGTMK+RLLKKKQYQSPRGQQKFRTDLEKIWVNC KYAGYKPGSSDDRAGIV CTLIL+TMIERYYADYMEQQELVVDE SWQAGRERRKREQFARIAHTPLNPALWPNGTCADQLDPVDG+DEETDSDDENMR+GDS+ HKRKFGSD SE QAALNTTAHAS SSAPLVDG GSSAG R ACNVEGLDQNMCALAAIG+NLGGSSSKR
Sbjct: 1 MWVAWRSFYIVYSCGILEQWGYLEAPTNPTTSTSIVRDSTNNSTGVSEPVAQRDTPDVETGEKSDTFSTSEAEDTRPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETVPKTKYADDVVLPLHKCLCQTKDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVETNPGYLGVVTREDMMDLGTMKRRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGYKPGSSDDRAGIVMCTLILKTMIERYYADYMEQQELVVDERSWQAGRERRKREQFARIAHTPLNPALWPNGTCADQLDPVDGSDEETDSDDENMRLGDSICHKRKFGSDDSEEQAALNTTAHASISSAPLVDGGGSSAGVRVACNVEGLDQNMCALAAIGKNLGGSSSKR 407
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2583.1 vs. uniprot
Match: A0A6H5LCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCM5_9PHAE) HSP 1 Score: 293 bits (751), Expect = 3.050e-88 Identity = 155/224 (69.20%), Postives = 167/224 (74.55%), Query Frame = 1
Query: 73 APTNPTTSTSILRNSTNNSTGRSEPVAQRDAPDVETGEKSDTFSTSEAEDTRPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETVPKAKYADDVVLPLHKCLCQKKDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKKRLLKKKQYQSPRGQQKFRTDLEKIWVNCCKYAGYKPGSSDDRAG 744
APTNP TST I+ +STNNSTG S+P+AQRDAPDVETGEKSDTFS SEAEDTR PRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGET+PKA+ ++ EFP+PKKGKDPQAHLLKH++RH V DLGTM+KRL KKKQYQSPRGQ KFRTDLEK WV C KYAGYK GSSDDRAG
Sbjct: 245 APTNPITSTYIVSDSTNNSTGLSDPIAQRDAPDVETGEKSDTFSASEAEDTRSIPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETLPKAR---------------RRTQEFPKPKKGKDPQAHLLKHIVRHGHDV------------------------DLGTMEKRLFKKKQYQSPRGQPKFRTDLEKFWVKCWKYAGYKAGSSDDRAG 429
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2583.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI) HSP 1 Score: 135 bits (340), Expect = 2.060e-29 Identity = 83/235 (35.32%), Postives = 120/235 (51.06%), Query Frame = 1
Query: 226 RPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCA--------------GREGETVPKAKYADDVVLPLHKCLCQKKDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVEANPGYLGVVTREDMMDLGTMKKRLLKKKQYQSPRGQQKFRTDLEKIWVNCCKYAGY----KPGSSDDRAGIVTCTLILETMIERYYADYME--QQELVVDEGSWQAGRERRKRE 870
R DR H C+ C+ E + +CE CPR C +C G++ ++ K D + +C + KD+EF P G P HLL LLRHDLS+ FREPVD+ +P Y+ + R MMDLGTM +L + K+Y RG +F+ DL +IW NC ++AG +P + GIV C L LE M +++ + YM Q+ E +W R+R++RE
Sbjct: 327 REGAEDRSSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSLLNGKQGDISIARCPECF-RGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKL-QGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQESTWDFHRQRQERE 559 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1441.2583.1 >prot_E-siliculosus-1a_F_contig1441.2583.1 ID=prot_E-siliculosus-1a_F_contig1441.2583.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2583.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=408bp MWVAWRSFYIVYSCGILEQWGYLAAPTNPTTSTSILRNSTNNSTGRSEPVback to top mRNA from alignment at E-siliculosus-1a_F_contig1441:7489..10026- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1441.2583.1 ID=mRNA_E-siliculosus-1a_F_contig1441.2583.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2583.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2538bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1441:7489..10026- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1441:7489..10026- >mRNA_E-siliculosus-1a_F_contig1441.2583.1 ID=mRNA_E-siliculosus-1a_F_contig1441.2583.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2583.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2448bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1441:7489..10026- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |