mRNA_E-siliculosus-1a_F_contig1440.2580.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1440.2580.1 vs. uniprot
Match: A0A6H5JRU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU2_9PHAE) HSP 1 Score: 122 bits (306), Expect = 9.400e-28 Identity = 115/241 (47.72%), Postives = 135/241 (56.02%), Query Frame = 1
Query: 280 FGRREMAAARERLVVSSEKLRFAFSSFEAVNEEVVARTTGVDALPLSQATARRVSEAASMAKTVALSVLKAAEAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAMESEFDPPVVRDRRKQSRDNSSGTGSGHADSMSSAGLEAETGDIMVEVKTGESDMSDEAEEEGHCTPPATEDRGEENESSHDDNAVSAFG-----STDQETLEEAEATPERDGGE 987
GRR+M AARERL SSEKLR AF+S AV+ E ARTT V LPLS AT+R VS+AA MAKTVAL+VLKAAE A A XXXXXXXX ++SE DPP V +RR S DNS GS SMSS G+E T ++ V VKT ESDMSD +EE+ + + G E+ESS DD+ S G S DQE +EAEAT DGG+
Sbjct: 46 LGRRDMEAARERLTDSSEKLRLAFASLHAVDGEFAARTTDVGTLPLSLATSR-VSQAAGMAKTVALTVLKAAEEAMAAATTARAEAVSAFAIKATTAXXXXXXXXAVKAQGMAKATAT------VTLKSETDPPTVMERRIPSGDNSGSNGSC---SMSSTGMEVATSNMAVAVKTSESDMSD-SEEQQKLSQHDVKATGGEHESSRDDDVTSEVGNADFRSADQERQKEAEATLGIDGGQ 275
BLAST of mRNA_E-siliculosus-1a_F_contig1440.2580.1 vs. uniprot
Match: A0A6H5KPJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ3_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.160e-6 Identity = 54/123 (43.90%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 652 TAMESEFDPPVVRDRRKQSRDNSSGTGSGHADSMSSAGLEAETGDIMVEVKTGESDMSDEAEEEGHC-----------TPPATEDRGEENESSHDDNAVSAFGSTDQETLEEAEATPERDGGE 987
T ++SE DP V RR S S GSG S S +G+EAE G + VKT ESDMS+ TP TED GEE+ESSHD VS G+ D E EAE TP GGE
Sbjct: 54 TYVKSEMDPSVNY-RRTPSGYKSGNKGSG---STSCSGVEAENGGVTATVKTWESDMSEXXXXXXXXXXXXXXXXXEDTPQDTEDIGEEHESSHDGGLVSESGNADHERHGEAEVTPGMAGGE 172 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1440.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1440.2580.1 >prot_E-siliculosus-1a_F_contig1440.2580.1 ID=prot_E-siliculosus-1a_F_contig1440.2580.1|Name=mRNA_E-siliculosus-1a_F_contig1440.2580.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=361bp MAAARERLVVSSEKLRFAFSSFEAVNEEVVARTTGVDALPLSQATARRVSback to top mRNA from alignment at E-siliculosus-1a_F_contig1440:13913..29946+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1440.2580.1 ID=mRNA_E-siliculosus-1a_F_contig1440.2580.1|Name=mRNA_E-siliculosus-1a_F_contig1440.2580.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=16034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1440:13913..29946+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1440:13913..29946+ >mRNA_E-siliculosus-1a_F_contig1440.2580.1 ID=mRNA_E-siliculosus-1a_F_contig1440.2580.1|Name=mRNA_E-siliculosus-1a_F_contig1440.2580.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2166bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1440:13913..29946+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |