mRNA_E-siliculosus-1a_F_contig144.2573.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig144.2573.1 vs. uniprot
Match: D7G6H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H1_ECTSI) HSP 1 Score: 668 bits (1723), Expect = 2.670e-232 Identity = 461/521 (88.48%), Postives = 471/521 (90.40%), Query Frame = 3
Query: 72 MATAGCMAWASVTSDLHPLRAAGYLILSVEALVVTFWWPRLYPPAGRKRSESSARHXXXXXXSRHLSSSGSADLFGGATPSPTINGQRSNTNGGKASSRWSGDSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFLGKEPLETFPEKRSAVDGDVRVPLPPKSRMRYARPVLLVLLTLSASYLTTWLLLSISSARASTAVDEDAMANTRNIEAMKKGAEVERRMREEREEGASRMELEAKALHEAVVAKEARQKXXXXXXXXXXXXXXXXXAEEKRLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAARLRQXXXXXXXXXXXXXXXXXXXXXXXXXXX--AKMAATLEQKRSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQAVRPCTACRLTVAPEGRVELREEGKLLWSGGQRQKKARXXXXXXXXXRKRAPRANNDREGADGSDAFRLIITDDGNAILEREGSEVVWKALDR 1628
MATAGCMAWA VTSDLHPLRAAGYLILSVEAL VTFWWPRLYPPAGRKRSESSARH SRHLS SGSADLFGGATPSPTINGQRSNTNGGKASSRWSGDSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFLG+EPLETFPEKRSAVDGD+RVPLPPKSRMRYARPVL+VLLTLSASYLTTWLLLSISSAR STAVDEDAM++TR+I AMKKGAE+ERR REEREEGA RMELE KAL EAV AKEA XXXXXXXXXXXXXXXX AEEKRLEE XXXXXXXXXXXXXXXXXXXXXXXXXXQAARLR+XXXXXXXXXXXXXXXXXXXXXXXXXXX AKMAATLEQ RSIGLEDAL+NGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQA ELREEGKLLWSGGQRQK XXXXXXXXXRKR P AN DREGADGSD FRLI+TDDGNAILEREGSEVVWKALDR
Sbjct: 1 MATAGCMAWARVTSDLHPLRAAGYLILSVEALTVTFWWPRLYPPAGRKRSESSARHRRQHRRSRHLSRSGSADLFGGATPSPTINGQRSNTNGGKASSRWSGDSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFLGEEPLETFPEKRSAVDGDMRVPLPPKSRMRYARPVLIVLLTLSASYLTTWLLLSISSARVSTAVDEDAMSSTRDIVAMKKGAEMERRTREEREEGARRMELEEKALREAVAAKEAXXXXXXXXXXXXXXXXXXXDAEEKRLEEARAXXXXXXXXXXXXXXXXXXXXXXXXXXQAARLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKMAATLEQTRSIGLEDALSNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQA-----------------ELREEGKLLWSGGQRQKXXXXXXXXXXXXRKRVPSAN-DREGADGSDMFRLIVTDDGNAILEREGSEVVWKALDR 503
BLAST of mRNA_E-siliculosus-1a_F_contig144.2573.1 vs. uniprot
Match: A0A6H5L6N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N1_9PHAE) HSP 1 Score: 636 bits (1640), Expect = 1.590e-219 Identity = 435/519 (83.82%), Postives = 445/519 (85.74%), Query Frame = 3
Query: 72 MATAGCMAWASVTSDLHPLRAAGYLILSVEALVVTFWWPRLYPPAGRKRSESSARHXXXXXXSRHLSSSGSADLFGGATPSPTINGQRSNTNGGKASSRWSGDSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFLGKEPLETFPEKRSAVDGDVRVPLPPKSRMRYARPVLLVLLTLSASYLTTWLLLSISSARASTAVDEDAMANTRNIEAMKKGAEVERRMREEREEGASRMELEAKALHEAVVAKEARQKXXXXXXXXXXXXXXXXXAEEKRLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAARLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXAKMAATLEQKRSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQAVRPCTACRLTVAPEGRVELREEGKLLWSGGQRQKKARXXXXXXXXXRKRAPRANNDREGADGSDAFRLIITDDGNAILEREGSEVVWKALDR 1628
MATAGC+AWASVTSDLHPL AAGYLILSVEALVVTFWWPRLYPPAGRKRSESS XXXXXXSRHL SSGS FGGATPSPTINGQR NTNGGKASSRWSGDSSGWWES+GGLEGLSEAGRSSAPSSLVSIGGR F G+EPLETFPEKRSAVDGDVRVPLP KSRMRYARPVLLVLLTLSASYLTTWLLLSIS AR STAVDE AM+NTR+IEAMKK AEVERR+REEREE A+RMELE KAL EAV A XXXXXXXXXXXXXXXXX XXXXXXXXX XXXXXXXXXQAARLR XXXXXXXXXXXXXXXXXXXXXXXXXXX KMAATLEQ+RSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQAVRPCTACRLTVAPEGRVELREEGKLLWSGGQRQKKAR RKR PRAN DREGADGS AFRL+ITDDGNAILEREGSEVVWKAL+R
Sbjct: 1 MATAGCIAWASVTSDLHPLSAAGYLILSVEALVVTFWWPRLYPPAGRKRSESSXXXXXXXXXSRHLGSSGSTVFFGGATPSPTINGQRFNTNGGKASSRWSGDSSGWWESDGGLEGLSEAGRSSAPSSLVSIGGRXXXXXXXXXXXXXXXXFFGEEPLETFPEKRSAVDGDVRVPLPSKSRMRYARPVLLVLLTLSASYLTTWLLLSISLARISTAVDEGAMSNTRDIEAMKKAAEVERRVREEREEAANRMELEEKALQEAVAAXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERRAREEQKAXXXXXXXXXQAARLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMAATLEQRRSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQAVRPCTACRLTVAPEGRVELREEGKLLWSGGQRQKKARQQKRQTTQQRKRVPRAN-DREGADGSGAFRLVITDDGNAILEREGSEVVWKALNR 517 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig144.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig144.2573.1 >prot_E-siliculosus-1a_F_contig144.2573.1 ID=prot_E-siliculosus-1a_F_contig144.2573.1|Name=mRNA_E-siliculosus-1a_F_contig144.2573.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=520bp MATAGCMAWASVTSDLHPLRAAGYLILSVEALVVTFWWPRLYPPAGRKRSback to top mRNA from alignment at E-siliculosus-1a_F_contig144:41008..48032- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig144.2573.1 ID=mRNA_E-siliculosus-1a_F_contig144.2573.1|Name=mRNA_E-siliculosus-1a_F_contig144.2573.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7025bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:41008..48032- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig144:41008..48032- >mRNA_E-siliculosus-1a_F_contig144.2573.1 ID=mRNA_E-siliculosus-1a_F_contig144.2573.1|Name=mRNA_E-siliculosus-1a_F_contig144.2573.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3120bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:41008..48032- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |