mRNA_E-siliculosus-1a_F_contig1433.2546.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1433.2546.1
Unique NamemRNA_E-siliculosus-1a_F_contig1433.2546.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1433.2546.1 vs. uniprot
Match: D7FKP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP8_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 9.270e-150
Identity = 261/334 (78.14%), Postives = 266/334 (79.64%), Query Frame = 2 
Query:   59 MSTTGKLSSYFTKRRGVTSSRAGPEELHVGSSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEQRQGGGQEGGDAGERGSFCFNFNPADASDGPTRVPESNGARRRSGDASGLRAAQDFLTVVEKSGAQPNGKKKRTGXXXXXXXXXXX--KGEAQQSREQKSQDPVGEGPEQEIVVDCPTTSSHGTVGDGXXXXXXXXXXXXXXXXXXXXXXXXXHRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIADGEVGEEKLPERKGEGLGRPGCDRARGMVGAGAPGSTAGGGSSVFAFGFDIGISFDGGN 1054
            MSTTG LSSYFTKRR V SSRAGPEELHV SSSS                             ADEQRQGGGQEGGDAGERGSFCFNFNPADAS  PT VPESNGA+RRSGDAS LRAAQDFLTVVEKSGAQP+GKKKRTGXXXXXXXXXXX  KGEAQQSREQKSQDPVGEGPEQ+ VVDCPT S H TVGDG               XXX       HRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLI DGEVGEEKLPER+G GLGRPGCDRARGMVGAGAPGST GGGSSVFAFGFDIGISFDGG+
Sbjct:    1 MSTTGTLSSYFTKRREVKSSRAGPEELHVDSSSSSGSVRARLEKKLQVKQKTGFAFNFAVDSDADEQRQGGGQEGGDAGERGSFCFNFNPADAS-APTCVPESNGAKRRSGDASSLRAAQDFLTVVEKSGAQPSGKKKRTGXXXXXXXXXXXXGKGEAQQSREQKSQDPVGEGPEQDNVVDCPTFSGHCTVGDGGGEATSSAVASLPAAXXXDSSPKREHRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIPDGEVGEEKLPERQGGGLGRPGCDRARGMVGAGAPGSTTGGGSSVFAFGFDIGISFDGGS 333
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BLAST of mRNA_E-siliculosus-1a_F_contig1433.2546.1 vs. uniprot
Match: A0A836CBN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.700e-6
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 2 
Query:  743 PGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIADGEVGEEKLPER 913
            PG +LESWKDP +T  ERR+ R+GSGVRN+ AIQR   A  G     E G+ + P++
Sbjct:  122 PGLSLESWKDPTLTEAERRKLRYGSGVRNIAAIQRRTKAV-GAATSQEPGDAEPPQQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKP8_ECTSI9.270e-15078.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBN0_9STRA3.700e-650.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1433contigE-siliculosus-1a_F_contig1433:23672..26573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size999
Model size1565
Exons2
Ec32 orthologEc-21_001670.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1433.2546.1prot_E-siliculosus-1a_F_contig1433.2546.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1433 23730..26065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.2060015-UTR-E-siliculosus-1a_F_contig1433:23671..237291622927947.2060015-UTR-E-siliculosus-1a_F_contig1433:23671..23729Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1433 23672..23729 +
1696318748.7641728-UTR-E-siliculosus-1a_F_contig1433:23671..237291696318748.7641728-UTR-E-siliculosus-1a_F_contig1433:23671..23729Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1433 23672..23729 +
1622927947.2636535-UTR-E-siliculosus-1a_F_contig1433:26065..265731622927947.2636535-UTR-E-siliculosus-1a_F_contig1433:26065..26573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1433 26066..26573 +
1696318748.7968519-UTR-E-siliculosus-1a_F_contig1433:26065..265731696318748.7968519-UTR-E-siliculosus-1a_F_contig1433:26065..26573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1433 26066..26573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.235542-CDS-E-siliculosus-1a_F_contig1433:23729..238401622927947.235542-CDS-E-siliculosus-1a_F_contig1433:23729..23840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 23730..23840 +
1696318748.7751553-CDS-E-siliculosus-1a_F_contig1433:23729..238401696318748.7751553-CDS-E-siliculosus-1a_F_contig1433:23729..23840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 23730..23840 +
1622927947.250844-CDS-E-siliculosus-1a_F_contig1433:25177..260651622927947.250844-CDS-E-siliculosus-1a_F_contig1433:25177..26065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 25178..26065 +
1696318748.7849848-CDS-E-siliculosus-1a_F_contig1433:25177..260651696318748.7849848-CDS-E-siliculosus-1a_F_contig1433:25177..26065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 25178..26065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1433.2546.1

>prot_E-siliculosus-1a_F_contig1433.2546.1 ID=prot_E-siliculosus-1a_F_contig1433.2546.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=333bp
MSTTGKLSSYFTKRRGVTSSRAGPEELHVGSSSSSSSVRARLEKKLQVKQ
KTGFAFNFAVDSDADEQRQGGGQEGGDAGERGSFCFNFNPADASDGPTRV
PESNGARRRSGDASGLRAAQDFLTVVEKSGAQPNGKKKRTGAGKKKKKKK
GGKGEAQQSREQKSQDPVGEGPEQEIVVDCPTTSSHGTVGDGGGEATSSA
AASLPAAAASDSSPKREHRQRPPGLRPPPGFTLESWKDPAITGEERRRRR
FGSGVRNMVAIQRSCDARRGLIADGEVGEEKLPERKGEGLGRPGCDRARG
MVGAGAPGSTAGGGSSVFAFGFDIGISFDGGN*
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mRNA from alignment at E-siliculosus-1a_F_contig1433:23672..26573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1433.2546.1 ID=mRNA_E-siliculosus-1a_F_contig1433.2546.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2902bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1433:23672..26573+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTACCGCGTTCGCGTGTTCGCGTTCACGTCTCTTTCTGCCTCTCTCC
TCCAAATAATGTCGACTACGGGCAAGCTCTCATCGTACTTCACAAAGCGG
CGGGGGGTTACGAGCAGTCGCGCGGGCCCTGAAGAACTACACGTAGGCAG
CAGTTCATCATCCAGCTCGGTGAGCAGCACACCAATCAGCGGACCAATCG
GCGGTACTGCTGCATGTAGTCTACATATGTACCATCGTACCATCGTGGCT
ACAGTATTATTACCTCGTACGGCTGTGCGCAAACTATGGGATAAAGTATA
GAATCGTCTAACTTGGGGGATTGGGGTAGGGGTATAGAGGGTCTGCAGGG
AGTCCAAATGCTAGATAGTGGGAATGTCGTCAAATGGCAAAATGTCTGTT
GGGTACACCGCTGTTGTTGTGCATGCTGCTTGTGTAGCGCTCTTCTGTGT
TGGGGGTTGGGGGTGTGTCTCGTCCAGACGCATCTTCGGTAGGGAGCTGA
GATGGCTGTGTGGCATTGCCTCCCAGCTGAGTCTTGGCCTATGACTATTT
TTTTGGGTCGCGGCAGCTGTAGGTACCCTTCAAGTAGAACAGCAGTAGTG
CATGGTGGTGGGGTCTGTTTCGGGTTGAGCACCTTTTGGTTGTCTCTGGG
GTAGACGTTTCATGTGATTCGTCTATTTCTTGAAAAGTACATTCCATGGT
TGGTTGTGATGACCTGGCTGGTGATATGCTATGAAAAACAGCGCCCACTC
GCTCCCAAGCAGTATGTACAGCAGGGTACTTGTAGTCCTGTAGTCCATGT
GTGCTCGCATTAGACCACGTTAGACCGGGAAAATGTGGCTGGAAGAGAGC
GACAAGCTGTGCCCTAAACAAGGAAGTGACCCGACATCGCGGCAGTGGGT
GTCATGGGTGTGCCTGGGTTTGATACCGACCGTCCCTGTGTTTAGGGTAG
TTTTCCCGTCGTCAAGAATCATAGTCGTGTTATTGAAAGACTGCTTGCTG
TTCACAGCCACACTCTGCCCAGGAAGCATTCTTTCGCACTTGCCCGAGAA
GACTTGAATCTCTTCGGCATTCCCCCCGTTTTTTGTCGACAACGGGTGTG
AGTTGTGCTGAAGAATCACCTGGATGGAGGGTACGAGCAAACAAGGACAA
TTTGAATCAAACGGTAAATACCAGATAATGTGTATGAGAAAGAGAGGCTA
CGAGACCCGCGCATACATCACCCACAGCACCAAGTTTGAATCCCCTCATT
TTTTGCAGTTGTCTGGAGCCCAGCATTTGAACCTCGGCTGCATACGCACC
TCTCAGCATCTACCGCGCACAACAAGTGAACACCCCTTTGATGTCATGCA
GGCTGGTTTGTTGACTTTTTCTTGCCTCCCCCCTCTTCAGTTGTGAGCCC
CACAGCCATTCTCCTCTCTGCCCCCCCCATCGCTGGTTGCTCAACGGACA
TACCATAGAGCTCATCTCTCGCCACTGCCGGTGTTGTCTGTTTTTCTTAC
GACAAGGTACGAGCACGGTTGGAGAAGAAACTGCAGGTGAAGCAGAAAAC
TGGATTCGCCTTCAACTTTGCGGTAGACAGCGACGCGGATGAACAGCGGC
AAGGAGGTGGGCAGGAGGGGGGAGACGCTGGCGAGCGAGGGTCATTCTGC
TTTAATTTCAACCCAGCAGACGCCAGCGACGGTCCTACACGTGTACCGGA
GAGTAACGGAGCAAGAAGAAGAAGCGGCGATGCCTCTGGCCTGCGTGCAG
CGCAGGACTTTCTTACCGTGGTCGAAAAGAGTGGAGCGCAACCTAACGGG
AAAAAGAAAAGGACGGGAGCAGGGAAAAAGAAGAAGAAGAAAAAGGGTGG
CAAGGGGGAAGCGCAGCAGTCTCGAGAACAGAAATCTCAAGATCCTGTCG
GGGAAGGACCTGAGCAAGAAATTGTCGTTGATTGCCCGACCACCTCCAGT
CACGGCACGGTGGGCGACGGCGGAGGGGAAGCAACGAGCAGCGCCGCCGC
CTCTCTTCCCGCCGCCGCTGCGAGTGACTCGAGCCCCAAGCGCGAGCACA
GGCAACGCCCCCCCGGGCTGCGGCCACCGCCCGGCTTCACGCTGGAAAGC
TGGAAGGACCCTGCCATAACCGGCGAGGAGCGGCGAAGAAGGAGGTTCGG
CAGCGGGGTACGGAACATGGTCGCTATTCAGCGCAGTTGTGACGCAAGGC
GAGGCTTGATTGCGGATGGGGAAGTGGGGGAAGAGAAGTTGCCCGAGAGG
AAGGGGGAAGGGCTGGGCAGGCCTGGTTGCGACAGAGCACGAGGGATGGT
TGGCGCTGGGGCTCCGGGCAGTACCGCCGGCGGAGGATCATCGGTTTTTG
CTTTCGGCTTTGACATCGGTATATCTTTCGATGGTGGCAACTGAGCGTTT
GTACATGTGCTGTTGTGTGCGTTATCTGTGGTTTTAGATGATAATCTTGT
ACCCCACCTCCGGTGCGCCGATAGTAGGTCTTGCGTTTAGGGCGATCGTC
GGATGAGGGCAAGAAGTGGCGGACGTCCTCTCGTTGGTCGTCGTCATAGT
TGGGCGTCCAACCACCGTGCACATGGTCCTGATGATACGCGTACGTGGTG
TGCTTGATGCACGCAAGCCGTTACTTGGTTCTGACGCTGAAACCCGAAAT
GTAGGACGAGCTGCAAGGCGCCCTGCTGGGCGACTTGATCAAGTGCGAAA
TCTTGATCAACTGATGGGAGAATGTAATTTAACAGGCTTCGACCAGAGCA
GCTGTCGATAGTAAAGAGTTTTCTCTCTGATACTTGTTGTGTGTGTCCGT
CCCATCTGTTCTGGGAGCAGTCTAAACCTTTCGGTACATGTATCTGTCAG
CCGGGGTATATAGCACAGCAGTAGGAATTCCCTTTTTAAAAAAATGTTGG
CC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1433:23672..26573+

>mRNA_E-siliculosus-1a_F_contig1433.2546.1 ID=mRNA_E-siliculosus-1a_F_contig1433.2546.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1433:23672..26573+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGACTACGGGCAAGCTCTCATCGTACTTCACAAAGCGGCGGGGGGT
TACGAGCAGTCGCGCGGGCCCTGAAGAACTACACGTAGGCAGCAGTTCAT
CATCCAGCTCGATGTCGACTACGGGCAAGCTCTCATCGTACTTCACAAAG
CGGCGGGGGGTTACGAGCAGTCGCGCGGGCCCTGAAGAACTACACGTAGG
CAGCAGTTCATCATCCAGCTCGGTACGAGCACGGTTGGAGAAGAAACTGC
AGGTGAAGCAGAAAACTGGATTCGCCTTCAACTTTGCGGTAGACAGCGAC
GCGGATGAACAGCGGCAAGGAGGTGGGCAGGAGGGGGGAGACGCTGGCGA
GCGAGGGTCATTCTGCTTTAATTTCAACCCAGCAGACGCCAGCGACGGTC
CTACACGTGTACCGGAGAGTAACGGAGCAAGAAGAAGAAGCGGCGATGCC
TCTGGCCTGCGTGCAGCGCAGGACTTTCTTACCGTGGTCGAAAAGAGTGG
AGCGCAACCTAACGGGAAAAAGAAAAGGACGGGAGCAGGGAAAAAGAAGA
AGAAGAAAAAGGGTGGCAAGGGGGAAGCGCAGCAGTCTCGAGAACAGAAA
TCTCAAGATCCTGTCGGGGAAGGACCTGAGCAAGAAATTGTCGTTGATTG
CCCGACCACCTCCAGTCACGGCACGGTGGGCGACGGCGGAGGGGAAGCAA
CGAGCAGCGCCGCCGCCTCTCTTCCCGCCGCCGCTGCGAGTGACTCGAGC
CCCAAGCGCGAGCACAGGCAACGCCCCCCCGGGCTGCGGCCACCGCCCGG
CTTCACGCTGGAAAGCTGGAAGGACCCTGCCATAACCGGCGAGGAGCGGC
GAAGAAGGAGGTTCGGCAGCGGGGTACGGAACATGGTCGCTATTCAGCGC
AGTTGTGACGCAAGGCGAGGCTTGATTGCGGATGGGGAAGTGGGGGAAGA
GAAGTTGCCCGAGAGGAAGGGGGAAGGGCTGGGCAGGCCTGGTTGCGACA
GAGCACGAGGGATGGTTGGCGCTGGGGCTCCGGGCAGTACCGCCGGCGGA
GGATCATCGGTTTTTGCTTTCGGCTTTGACATCGGTATATCTTTCGATGG
TGGCAACTGAGTACGAGCACGGTTGGAGAAGAAACTGCAGGTGAAGCAGA
AAACTGGATTCGCCTTCAACTTTGCGGTAGACAGCGACGCGGATGAACAG
CGGCAAGGAGGTGGGCAGGAGGGGGGAGACGCTGGCGAGCGAGGGTCATT
CTGCTTTAATTTCAACCCAGCAGACGCCAGCGACGGTCCTACACGTGTAC
CGGAGAGTAACGGAGCAAGAAGAAGAAGCGGCGATGCCTCTGGCCTGCGT
GCAGCGCAGGACTTTCTTACCGTGGTCGAAAAGAGTGGAGCGCAACCTAA
CGGGAAAAAGAAAAGGACGGGAGCAGGGAAAAAGAAGAAGAAGAAAAAGG
GTGGCAAGGGGGAAGCGCAGCAGTCTCGAGAACAGAAATCTCAAGATCCT
GTCGGGGAAGGACCTGAGCAAGAAATTGTCGTTGATTGCCCGACCACCTC
CAGTCACGGCACGGTGGGCGACGGCGGAGGGGAAGCAACGAGCAGCGCCG
CCGCCTCTCTTCCCGCCGCCGCTGCGAGTGACTCGAGCCCCAAGCGCGAG
CACAGGCAACGCCCCCCCGGGCTGCGGCCACCGCCCGGCTTCACGCTGGA
AAGCTGGAAGGACCCTGCCATAACCGGCGAGGAGCGGCGAAGAAGGAGGT
TCGGCAGCGGGGTACGGAACATGGTCGCTATTCAGCGCAGTTGTGACGCA
AGGCGAGGCTTGATTGCGGATGGGGAAGTGGGGGAAGAGAAGTTGCCCGA
GAGGAAGGGGGAAGGGCTGGGCAGGCCTGGTTGCGACAGAGCACGAGGGA
TGGTTGGCGCTGGGGCTCCGGGCAGTACCGCCGGCGGAGGATCATCGGTT
TTTGCTTTCGGCTTTGACATCGGTATATCTTTCGATGGTGGCAACTGA
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