mRNA_E-siliculosus-1a_F_contig1432.2541.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1432.2541.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE) HSP 1 Score: 1230 bits (3183), Expect = 0.000e+0 Identity = 752/902 (83.37%), Postives = 770/902 (85.37%), Query Frame = 1
Query: 211 MDIAEEMTAVAAVRLLASSPQDEEGIGLQCSREALVSSLERDLQGPRVRATLQGLYDMLVDGEQSHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTFDKSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKARTLRVVLTILRRSTQRMATARRSKFLEASLRPALEATKRVGLVAAAGDAQAEPGLPQKSSGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADEDMLSRAAYDAAASAAETAADFVGPLMEQASAERALLAVSGLPTAGRGEGRPAAAAVATSAGGSGRAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXXXXGSEDNPPAGESLARAQERLVGIVVDSPLDLRFVLLHGCRVSYASGVKRRRRRSEGGGEEGESQLPATRLGGAVGLGEAAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRSKRVASKGLELACFVAERLGGFPDRTGAFAFDWEPGDEEIDGAGDXXXXXXXXXXXXREEARLCFA--------------------------------------------QRGAV--SSTTSEGTSPSSRRRPFDPHRLDLAGFLQVLVDVMVSCPLPGLRTRGHAALVALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQCGIEEXXXXXXXXXXXXXXXXXPS-------------------------LSSSSPFASALAGDVVCGQLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQNRLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELELAVV 2703
MDI EEMTAVA VRLLAS QDEEGIG QCSRE LVSSLERDLQGPRVRATLQGL+DMLVDGEQ+H VGEVLDTVSWEAFGLVVGCLERFATS S N+S S+TGTF+KSSDEAETLTTSRDADDCAALSE LALAMAEIFSPKELHLM LEHLHAYTKARTLRVVLTILRRSTQ+M TARR KFLEASLRPALEATKRVGLVAAAGDA AEPGLPQKSSGSD XXXXXXXXXXXXXXXXX TADEDM SRAAYDAAASAAETAADF+GPLMEQASAE+ALLAVS +PTAGRGEGRPAAA VATSAGGSGRAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVC XXXXXXXXXX GSEDNPPA ESLARAQERLVGIVVDSPLDLRFVLLHG RVS+ASGVKRRR+RSEGGGE+GES LPA +LGGAVGLGEAAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAE LMRDRSKRVA+KGLELACFVAERLGGFPDRTGAFAFDWEPGDEEIDGAGD XXXXXXX REEA + QR A SST SE T+PSSRRR FDPH LDLAGFLQVLVDVMVSCPLPGLRTRGHAAL+ALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQCGIEEXXXXXXXXXXXXXXXXX LSSSSPFASALAGDVVC QLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQN+LLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELELA V
Sbjct: 1 MDIGEEMTAVAVVRLLASPAQDEEGIGQQCSREQLVSSLERDLQGPRVRATLQGLHDMLVDGEQNHSTPVGEVLDTVSWEAFGLVVGCLERFATSASSNNSDSITGTFEKSSDEAETLTTSRDADDCAALSERLALAMAEIFSPKELHLMALEHLHAYTKARTLRVVLTILRRSTQQMVTARRWKFLEASLRPALEATKRVGLVAAAGDAPAEPGLPQKSSGSDADEXXXXXXXXXXXXXXXXXLP---------TADEDMPSRAAYDAAASAAETAADFIGPLMEQASAEQALLAVSRVPTAGRGEGRPAAAVVATSAGGSGRAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCCTXXXXXXXXXX-GSEDNPPARESLARAQERLVGIVVDSPLDLRFVLLHGYRVSFASGVKRRRKRSEGGGEKGESHLPAAKLGGAVGLGEAAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEALMRDRSKRVANKGLELACFVAERLGGFPDRTGAFAFDWEPGDEEIDGAGDDXXXXXXXNGGGREEAHTPYGHTRTSAHNYEFYGCPDLLSHRYFTIFRPPPTPFHPFRRDVAAWQQRDADAGSSTISENTNPSSRRRLFDPHHLDLAGFLQVLVDVMVSCPLPGLRTRGHAALMALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQCGIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSSSPFASALAGDVVCEQLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQNKLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELELAAV 892
BLAST of mRNA_E-siliculosus-1a_F_contig1432.2541.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI) HSP 1 Score: 1102 bits (2849), Expect = 0.000e+0 Identity = 670/831 (80.63%), Postives = 689/831 (82.91%), Query Frame = 1
Query: 211 MDIAEEMTAVAAVRLLASSPQDEEGIGLQCSREALVSSLERDLQGPRVRATLQGLYDMLVDGEQSHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTFDKSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKARTLRVVLTILRRSTQRMATARRSKFLEASLRPALEATKRVGLVAAAGDAQAEPGLPQKSSGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADEDMLSRAAYDAAASAAETAADFVGPLMEQASAERALLAVSGLPTAGRGEGRPAAAAVATSAGGSGRAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXXXXGSEDNPPAGESLARAQERLVGIVVDSPLDLRFVLLHGCRVSYASGVKRRRRRSEGGGEEGESQLPATRLGGAVGLGEAAINGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRSKRVASKGLELACFVAERLGGFPDRTGAFAFDWEPGDEEIDGAGDXXXXXXXXXXXXREEARLCFAQRGAVSSTTSEGTSPSSRRRPFDPHRLDLAGFLQVLVDVMVSCPLPGLRTRGHAALVALLGAADEASRFRVLRRLVELCPWPNARGLLLDAFRREIDRALRQCGIEEXXXXXXXXXXXXXXXXXPSLSSSSPFASALAGDVVCGQLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQNRLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELELAVV 2703
MDIAEEMTA+AAV LLA SPQDEEGIGLQCSREALVSSLERDLQGPRVR TLQGLYDMLVDGE SHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTF+KSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKART+RVVLTILRRST+RMATARRSKFLEASLRPAL+A KRVGLVAAAGDA AEPGL QKSSGSDXXXXXXXXXXXXXXXXXXXXXXX TAD DM S AAYDAAASAAETAADF+GPLMEQASAERALLAVSGLPTAGRGEGRPAAAAVA GGSG AVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXX GSEDNP AGESLARA+ERL+GIVVDSPLDLRF LLHGCRVSYASGVKRRRR+SEGGGEEG+SQLPA RLGGAVGL EAA+NGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRS+RVA+KGLELACFVAERLGGFPDR+GA+AFDWEPGDEEIDGAGD XXXXXX R+E VLVDVMVSCPLPGLRTRGHAALVA+L ADEASRFR+LRRLVELCPWPN L RACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGAR SGRAEAGAAWGRL LREPKKLLQNRLLVQGLLDELRGAVITA+NAGPEHFRLFILEDAAQQCLQELELAVV
Sbjct: 1 MDIAEEMTAMAAVGLLAFSPQDEEGIGLQCSREALVSSLERDLQGPRVRVTLQGLYDMLVDGEHSHRAAVGEVLDTVSWEAFGLVVGCLERFATSPSPNSSGSVTGTFEKSSDEAETLTTSRDADDCAALSEGLALAMAEIFSPKELHLMTLEHLHAYTKARTVRVVLTILRRSTERMATARRSKFLEASLRPALKAAKRVGLVAAAGDAPAEPGLRQKSSGSDXXXXXXXXXXXXXXXXXXXXXXXLLP-----TADGDMPSSAAYDAAASAAETAADFIGPLMEQASAERALLAVSGLPTAGRGEGRPAAAAVAXXXGGSGHAVGSGEKEGVSASDLSLAAYIGFALSALELAGETSVCXXXXXXXXXXXT-GSEDNPAAGESLARAEERLIGIVVDSPLDLRFALLHGCRVSYASGVKRRRRKSEGGGEEGKSQLPAARLGGAVGLAEAAVNGALPWTLRGVSTLAYLVACEPRLRDKWLPLVWSRRTERRLFLPHAEVLMRDRSRRVANKGLELACFVAERLGGFPDRSGAYAFDWEPGDEEIDGAGDDXXXXXXWNGGGRQE----------------------------------------VLVDVMVSCPLPGLRTRGHAALVAILSGADEASRFRLLRRLVELCPWPN--------------------------------------------------------------LLRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARADSGRAEAGAAWGRLGLREPKKLLQNRLLVQGLLDELRGAVITANNAGPEHFRLFILEDAAQQCLQELELAVV 723 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1432.2541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1432.2541.1 >prot_E-siliculosus-1a_F_contig1432.2541.1 ID=prot_E-siliculosus-1a_F_contig1432.2541.1|Name=mRNA_E-siliculosus-1a_F_contig1432.2541.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=833bp MDIAEEMTAVAAVRLLASSPQDEEGIGLQCSREALVSSLERDLQGPRVRAback to top mRNA from alignment at E-siliculosus-1a_F_contig1432:16421..21959+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1432.2541.1 ID=mRNA_E-siliculosus-1a_F_contig1432.2541.1|Name=mRNA_E-siliculosus-1a_F_contig1432.2541.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1432:16421..21959+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1432:16421..21959+ >mRNA_E-siliculosus-1a_F_contig1432.2541.1 ID=mRNA_E-siliculosus-1a_F_contig1432.2541.1|Name=mRNA_E-siliculosus-1a_F_contig1432.2541.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1432:16421..21959+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |