mRNA_E-siliculosus-1a_F_contig1426.2510.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1426.2510.1
Unique NamemRNA_E-siliculosus-1a_F_contig1426.2510.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1426.2510.1 vs. uniprot
Match: A0A6H5J8Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Z5_9PHAE)

HSP 1 Score: 664 bits (1714), Expect = 1.340e-235
Identity = 376/470 (80.00%), Postives = 405/470 (86.17%), Query Frame = 1 
Query:    1 MDRKVRGSAMDLLAELTVLHSYIEKELEGVAVAVNDLFGKDHHAAA-TSARLQLSKKRILAALARQRILLWEFSTESEPAAVFARSEDSDGVFGSRHQNPIHEPAVGLIAD-KQCTACGPPGNPSNGLSGQPPERKLEEELQWKRGTLVRMKHLLRRKVGDLGATEAERGAIRRDMAKVDAALQELQDCQQGGLLPPRMNAGEDNEALGAPQPPKNETAREQDNSSSNNGRCYAESVLREVELRLPDGLDVLLGRIAEGVQPSRPRRPATTTDVSAPSTAMQPGTDSPCPVASEHVPKKNAGEETAEEASRQSGRAVGPDNRVGERCSGSRRSSERLPDAEREEARI--AANVSGQGLLNVSRVGAGHRTTMFAGAEEDLVLQQVKSCRQMKDGPKAVAMAARKEVAEGQAYNDSVLSVAAAAVNHGALNTKGLALSDTVAGRNRRKKPSHCIGGAFAGGLTGN-VGKEN 1395
            MD  +RG AMDLLAELTVLHS++E+ELEGVAVAVNDLF +DH AAA TSARLQLSK RILAAL RQRILLWEFSTESEPAAVFARSEDSDG  GSRHQNPIH+PAVGLIAD KQCTACG PGNPS+GLSGQPP RKL+EELQWKR TLVRMKHLLRRK GDLGATEA RGAIRRDMAKVDAAL++LQ+CQ GGLLPP+M+AGEDN++LGA QP KNE AREQDNSS NNGRCYAESVLREVELRLPDGLDVLLGRIAEGV+PSR RRP TT D  APST MQPGTDSPCP+AS HVP+ N  +E A +A  QSGR VGP++RVGERCSGS RSSERL DAE EEAR   AAN  GQGLLNV RVG GHRT +FAGAEEDLVLQ+VKSC ++KD PKAV MAARK++AE    N SVLSVAAA VN GALNTKGLALS TV GRN+ KKPSH IGGAF GGL G  VGKEN
Sbjct:    1 MDHTIRGPAMDLLAELTVLHSHVERELEGVAVAVNDLFEEDHQAAASTSARLQLSKNRILAALTRQRILLWEFSTESEPAAVFARSEDSDGNLGSRHQNPIHKPAVGLIADNKQCTACGRPGNPSSGLSGQPPARKLDEELQWKRDTLVRMKHLLRRKAGDLGATEAARGAIRRDMAKVDAALRDLQECQLGGLLPPQMDAGEDNDSLGASQPQKNEKAREQDNSS-NNGRCYAESVLREVELRLPDGLDVLLGRIAEGVRPSRRRRPTTTADAPAPSTPMQPGTDSPCPMASYHVPENNTRKE-AVKAFGQSGRTVGPNDRVGERCSGSPRSSERL-DAESEEARKLRAANFRGQGLLNVGRVGTGHRTKIFAGAEEDLVLQEVKSCGRVKDSPKAVVMAARKDMAEEHTSNRSVLSVAAA-VNLGALNTKGLALSATVTGRNK-KKPSHRIGGAFTGGLAGGGVGKEN 465
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8Z5_9PHAE1.340e-23580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1426contigE-siliculosus-1a_F_contig1426:15711..17959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1410
Model size1578
Exons2
Ec32 orthologEc-26_003250.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1426.2510.1prot_E-siliculosus-1a_F_contig1426.2510.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1426 15711..17791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.067213-CDS-E-siliculosus-1a_F_contig1426:15710..164441622927941.067213-CDS-E-siliculosus-1a_F_contig1426:15710..16444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1426 15711..16444 +
1696318746.198217-CDS-E-siliculosus-1a_F_contig1426:15710..164441696318746.198217-CDS-E-siliculosus-1a_F_contig1426:15710..16444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1426 15711..16444 +
1622927941.3255386-CDS-E-siliculosus-1a_F_contig1426:17115..177911622927941.3255386-CDS-E-siliculosus-1a_F_contig1426:17115..17791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1426 17116..17791 +
1696318746.2077174-CDS-E-siliculosus-1a_F_contig1426:17115..177911696318746.2077174-CDS-E-siliculosus-1a_F_contig1426:17115..17791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1426 17116..17791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.3368938-UTR-E-siliculosus-1a_F_contig1426:17791..179591622927941.3368938-UTR-E-siliculosus-1a_F_contig1426:17791..17959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1426 17792..17959 +
1696318746.217825-UTR-E-siliculosus-1a_F_contig1426:17791..179591696318746.217825-UTR-E-siliculosus-1a_F_contig1426:17791..17959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1426 17792..17959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1426.2510.1

>prot_E-siliculosus-1a_F_contig1426.2510.1 ID=prot_E-siliculosus-1a_F_contig1426.2510.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2510.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=470bp
MDRKVRGSAMDLLAELTVLHSYIEKELEGVAVAVNDLFGKDHHAAATSAR
LQLSKKRILAALARQRILLWEFSTESEPAAVFARSEDSDGVFGSRHQNPI
HEPAVGLIADKQCTACGPPGNPSNGLSGQPPERKLEEELQWKRGTLVRMK
HLLRRKVGDLGATEAERGAIRRDMAKVDAALQELQDCQQGGLLPPRMNAG
EDNEALGAPQPPKNETAREQDNSSSNNGRCYAESVLREVELRLPDGLDVL
LGRIAEGVQPSRPRRPATTTDVSAPSTAMQPGTDSPCPVASEHVPKKNAG
EETAEEASRQSGRAVGPDNRVGERCSGSRRSSERLPDAEREEARIAANVS
GQGLLNVSRVGAGHRTTMFAGAEEDLVLQQVKSCRQMKDGPKAVAMAARK
EVAEGQAYNDSVLSVAAAAVNHGALNTKGLALSDTVAGRNRRKKPSHCIG
GAFAGGLTGNVGKENAGCL*
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mRNA from alignment at E-siliculosus-1a_F_contig1426:15711..17959+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1426.2510.1 ID=mRNA_E-siliculosus-1a_F_contig1426.2510.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2510.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1426:15711..17959+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACCGCAAGGTAAGGGGGTCTGCGATGGATCTGCTCGCCGAGCTGAC
AGTTCTTCACAGCTACATCGAGAAAGAGCTCGAGGGCGTCGCGGTCGCCG
TAAACGACTTGTTTGGGAAGGATCATCATGCAGCAGCAACGTCGGCAAGA
CTGCAGCTGTCGAAAAAAAGGATCCTGGCGGCTCTCGCTCGGCAGCGGAT
CCTTCTCTGGGAGTTCTCGACAGAGAGCGAGCCGGCAGCGGTGTTCGCTC
GCTCGGAAGATAGCGACGGGGTTTTCGGGAGCCGCCACCAAAATCCAATC
CACGAACCGGCCGTTGGCTTGATCGCGGATAAACAATGCACCGCGTGCGG
CCCGCCCGGCAACCCCAGCAACGGTTTGAGCGGCCAACCACCGGAGAGAA
AATTGGAGGAGGAGCTCCAGTGGAAGCGTGGTACGCTCGTACGAATGAAG
CATCTTCTACGACGGAAGGTGGGAGACCTGGGAGCGACGGAGGCGGAGAG
AGGGGCGATCAGGCGCGACATGGCCAAGGTCGATGCCGCCCTGCAAGAGC
TACAGGACTGTCAGCAAGGTGGCCTCCTTCCGCCTCGAATGAATGCCGGC
GAGGACAACGAGGCCCTAGGAGCACCACAGCCCCCGAAGAACGAAACGGC
CCGAGAGCAGGACAACAGCAGTTCCAATAACGGTCGCTGCTACGCCGAAT
CTGTTCTTCGCGAGGTTGAGCTTCGGCTTCCCGAGTGAGTTACCTACGAG
TCGGAGAGATGGCATCCCCGTGTTAGCGTTGTAGGGTATTTCACCACCAT
CAGGGGGGTACCAGTGCCAAAAAGGGTAGTTTTAGAAACATCTCGTCGAG
GGCTTTCCTGAGAGGTATCGGTTGGTGTTCGCACCCTCCTACTTGTGGAC
AAATAGGCTAAACGAAAACGCTAACACGGGGGTGCCATCTTCTCCGACTC
TTACGGTAGTTGTACTACAATATACGGTGTGGCGCAGAGACCGCGCGCAG
ACTGCGGTGGGGACCAACGAACACTGTGCATAACCTATCAGTTATTATGG
TTGCACCGGCAGTAGAAGTGAAGTCCCTCTGTATATGTAGTACTGCCCTT
TCCGTGCTAAAGTGCTTCGCTCGCCATGGAAAGACTGGTGGATCTCTCGG
CTTTCTGGTGCACTCGTTGTGGTGACCACAACATAGAACATACACCTACC
TCTGCTGCCGTGGGTCGACAAAGACGCCCTTAGTGAGTTCCAACGTTGCC
GTCTGTCTTCGCACTACACATAGAACCGGTCCGATCTCTCTATCTCTCTC
CGCTCAGCACCTTCTAACATCCGTACTCTTCCTGTTGTTGTGGGAACAAA
AAAAACCATGCTCACCCTTCTTATGATCGCCCTCCCTCCTGTCGCTCCCA
AGCAGCGGTCTCGACGTGCTACTGGGACGCATAGCGGAAGGAGTTCAACC
CTCTCGTCCAAGAAGACCGGCAACTACAACCGACGTTTCTGCTCCTTCTA
CAGCAATGCAGCCCGGAACCGACTCACCCTGTCCCGTGGCCTCGGAGCAC
GTACCAAAGAAAAACGCGGGGGAAGAGACGGCAGAAGAAGCCTCTCGCCA
ATCAGGGCGCGCGGTTGGCCCGGACAACAGAGTCGGGGAGAGGTGCAGCG
GAAGTCGCAGGAGTTCAGAGAGGCTGCCAGATGCTGAAAGGGAAGAAGCT
AGAATAGCGGCCAACGTTAGCGGACAGGGGCTGTTGAACGTTAGCAGAGT
AGGCGCTGGCCACCGCACAACAATGTTCGCCGGAGCAGAAGAAGACTTGG
TGCTGCAGCAGGTGAAGTCGTGCCGACAAATGAAAGACGGCCCGAAAGCG
GTCGCGATGGCGGCGAGGAAGGAGGTGGCTGAAGGGCAGGCCTACAACGA
CAGTGTCTTGAGCGTAGCAGCTGCAGCAGTGAACCACGGAGCCTTGAACA
CGAAAGGCCTGGCTCTTTCTGATACCGTTGCGGGTCGGAACAGGAGGAAG
AAACCGAGTCATTGTATCGGCGGGGCTTTCGCGGGAGGGTTGACTGGTAA
TGTCGGCAAGGAGAACGCCGGTTGTCTATGAAGATGCCCACAAATAATGT
TGGTTTTCCCTGCCGAGCAGGGCTAAAGGGGGTTGGACGTGTGTGTAGCA
AGGCACGGGGAAGAATCTAGAGGTGGCGCACACGATTGTGGTTCAACCCA
TTTGGAGGTCGAAATCGAAAAAATACGGTGTGTACGAGTCGTGGAGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1426:15711..17959+

>mRNA_E-siliculosus-1a_F_contig1426.2510.1 ID=mRNA_E-siliculosus-1a_F_contig1426.2510.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2510.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2820bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1426:15711..17959+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACCGCAAGGTAAGGGGGTCTGCGATGGATCTGCTCGCCGAGCTGAC
AGTTCTTCACAGCTACATCGAGAAAGAGCTCGAGGGCGTCGCGGTCGCCG
TAAACGACTTGTTTGGGAAGGATCATCATGCAGCAGCAACGTCGGCAAGA
CTGCAGCTGTCGAAAAAAAGGATCCTGGCGGCTCTCGCTCGGCAGCGGAT
CCTTCTCTGGGAGTTCTCGACAGAGAGCGAGCCGGCAGCGGTGTTCGCTC
GCTCGGAAGATAGCGACGGGGTTTTCGGGAGCCGCCACCAAAATCCAATC
CACGAACCGGCCGTTGGCTTGATCGCGGATAAACAATGCACCGCGTGCGG
CCCGCCCGGCAACCCCAGCAACGGTTTGAGCGGCCAACCACCGGAGAGAA
AATTGGAGGAGGAGCTCCAGTGGAAGCGTGGTACGCTCGTACGAATGAAG
CATCTTCTACGACGGAAGGTGGGAGACCTGGGAGCGACGGAGGCGGAGAG
AGGGGCGATCAGGCGCGACATGGCCAAGGTCGATGCCGCCCTGCAAGAGC
TACAGGACTGTCAGCAAGGTGGCCTCCTTCCGCCTCGAATGAATGCCGGC
GAGGACAACGAGGCCCTAGGAGCACCACAGCCCCCGAAGAACGAAACGGC
CCGAGAGCAGGACAACAGCAGTTCCAATAACGGTCGCTGCTACGCCGAAT
CTGTTCTTCGCGAGGTTGAGCTTCGGCTTCCCGAATGGACCGCAAGGTAA
GGGGGTCTGCGATGGATCTGCTCGCCGAGCTGACAGTTCTTCACAGCTAC
ATCGAGAAAGAGCTCGAGGGCGTCGCGGTCGCCGTAAACGACTTGTTTGG
GAAGGATCATCATGCAGCAGCAACGTCGGCAAGACTGCAGCTGTCGAAAA
AAAGGATCCTGGCGGCTCTCGCTCGGCAGCGGATCCTTCTCTGGGAGTTC
TCGACAGAGAGCGAGCCGGCAGCGGTGTTCGCTCGCTCGGAAGATAGCGA
CGGGGTTTTCGGGAGCCGCCACCAAAATCCAATCCACGAACCGGCCGTTG
GCTTGATCGCGGATAAACAATGCACCGCGTGCGGCCCGCCCGGCAACCCC
AGCAACGGTTTGAGCGGCCAACCACCGGAGAGAAAATTGGAGGAGGAGCT
CCAGTGGAAGCGTGGTACGCTCGTACGAATGAAGCATCTTCTACGACGGA
AGGTGGGAGACCTGGGAGCGACGGAGGCGGAGAGAGGGGCGATCAGGCGC
GACATGGCCAAGGTCGATGCCGCCCTGCAAGAGCTACAGGACTGTCAGCA
AGGTGGCCTCCTTCCGCCTCGAATGAATGCCGGCGAGGACAACGAGGCCC
TAGGAGCACCACAGCCCCCGAAGAACGAAACGGCCCGAGAGCAGGACAAC
AGCAGTTCCAATAACGGTCGCTGCTACGCCGAATCTGTTCTTCGCGAGGT
TGAGCTTCGGCTTCCCGACGGTCTCGACGTGCTACTGGGACGCATAGCGG
AAGGAGTTCAACCCTCTCGTCCAAGAAGACCGGCAACTACAACCGACGTT
TCTGCTCCTTCTACAGCAATGCAGCCCGGAACCGACTCACCCTGTCCCGT
GGCCTCGGAGCACGTACCAAAGAAAAACGCGGGGGAAGAGACGGCAGAAG
AAGCCTCTCGCCAATCAGGGCGCGCGGTTGGCCCGGACAACAGAGTCGGG
GAGAGGTGCAGCGGAAGTCGCAGGAGTTCAGAGAGGCTGCCAGATGCTGA
AAGGGAAGAAGCTAGAATAGCGGCCAACGTTAGCGGACAGGGGCTGTTGA
ACGTTAGCAGAGTAGGCGCTGGCCACCGCACAACAATGTTCGCCGGAGCA
GAAGAAGACTTGGTGCTGCAGCAGGTGAAGTCGTGCCGACAAATGAAAGA
CGGCCCGAAAGCGGTCGCGATGGCGGCGAGGAAGGAGGTGGCTGAAGGGC
AGGCCTACAACGACAGTGTCTTGAGCGTAGCAGCTGCAGCAGTGAACCAC
GGAGCCTTGAACACGAAAGGCCTGGCTCTTTCTGATACCGTTGCGGGTCG
GAACAGGAGGAAGAAACCGAGTCATTGTATCGGCGGGGCTTTCGCGGGAG
GGTTGACTGGTAATGTCGGCAAGGAGAACGCCGGTTGTCTATGACGGTCT
CGACGTGCTACTGGGACGCATAGCGGAAGGAGTTCAACCCTCTCGTCCAA
GAAGACCGGCAACTACAACCGACGTTTCTGCTCCTTCTACAGCAATGCAG
CCCGGAACCGACTCACCCTGTCCCGTGGCCTCGGAGCACGTACCAAAGAA
AAACGCGGGGGAAGAGACGGCAGAAGAAGCCTCTCGCCAATCAGGGCGCG
CGGTTGGCCCGGACAACAGAGTCGGGGAGAGGTGCAGCGGAAGTCGCAGG
AGTTCAGAGAGGCTGCCAGATGCTGAAAGGGAAGAAGCTAGAATAGCGGC
CAACGTTAGCGGACAGGGGCTGTTGAACGTTAGCAGAGTAGGCGCTGGCC
ACCGCACAACAATGTTCGCCGGAGCAGAAGAAGACTTGGTGCTGCAGCAG
GTGAAGTCGTGCCGACAAATGAAAGACGGCCCGAAAGCGGTCGCGATGGC
GGCGAGGAAGGAGGTGGCTGAAGGGCAGGCCTACAACGACAGTGTCTTGA
GCGTAGCAGCTGCAGCAGTGAACCACGGAGCCTTGAACACGAAAGGCCTG
GCTCTTTCTGATACCGTTGCGGGTCGGAACAGGAGGAAGAAACCGAGTCA
TTGTATCGGCGGGGCTTTCGCGGGAGGGTTGACTGGTAATGTCGGCAAGG
AGAACGCCGGTTGTCTATGA
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