mRNA_E-siliculosus-1a_F_contig142.2477.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig142.2477.1
Unique NamemRNA_E-siliculosus-1a_F_contig142.2477.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig142.2477.1 vs. uniprot
Match: D7G0A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A9_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 3.200e-67
Identity = 124/134 (92.54%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:  151 LEKSVVPSRVSRNERGGGCRPPGAEAEQAMRSRGQTTQRACQPEANDVARRRRRRALPGGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRPAAAIARHSLRNAFLVLFAAMLAAPRIDNPSSSTARLRGG 552
            LEKSVVPS VSRNERG GCRPPGAEAEQAMRSRGQT QRACQ EA DVARRRRRRALP GGEKRTALEARDQRRFRPDVAAGRSDTASATARRR A AIARHSLRNAFLVLFAAMLA PRI+NPSSSTARLRGG
Sbjct:   60 LEKSVVPSTVSRNERGEGCRPPGAEAEQAMRSRGQTNQRACQQEAKDVARRRRRRALPTGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRSAPAIARHSLRNAFLVLFAAMLATPRINNPSSSTARLRGG 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig142.2477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A9_ECTSI3.200e-6792.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig142contigE-siliculosus-1a_F_contig142:1835..4527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size552
Model size553
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.3896027-CDS-E-siliculosus-1a_F_contig142:1834..19801622927932.3896027-CDS-E-siliculosus-1a_F_contig142:1834..1980Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig142 1835..1980 +
1696318743.1308372-CDS-E-siliculosus-1a_F_contig142:1834..19801696318743.1308372-CDS-E-siliculosus-1a_F_contig142:1834..1980Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig142 1835..1980 +
1622927932.4020371-CDS-E-siliculosus-1a_F_contig142:4121..45271622927932.4020371-CDS-E-siliculosus-1a_F_contig142:4121..4527Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig142 4122..4527 +
1696318743.1402564-CDS-E-siliculosus-1a_F_contig142:4121..45271696318743.1402564-CDS-E-siliculosus-1a_F_contig142:4121..4527Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig142 4122..4527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig142.2477.1prot_E-siliculosus-1a_F_contig142.2477.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig142 1835..4527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig142.2477.1

>prot_E-siliculosus-1a_F_contig142.2477.1 ID=prot_E-siliculosus-1a_F_contig142.2477.1|Name=mRNA_E-siliculosus-1a_F_contig142.2477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=184bp
SHSLDKKIEPRNNKQQAVSSIRKQPAAGGSRSHTEDATREGVRQVEEQML
LEKSVVPSRVSRNERGGGCRPPGAEAEQAMRSRGQTTQRACQPEANDVAR
RRRRRALPGGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRPAAAIA
RHSLRNAFLVLFAAMLAAPRIDNPSSSTARLRGG
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mRNA from alignment at E-siliculosus-1a_F_contig142:1835..4527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig142.2477.1 ID=mRNA_E-siliculosus-1a_F_contig142.2477.1|Name=mRNA_E-siliculosus-1a_F_contig142.2477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2693bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig142:1835..4527+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGCACAGCCTGGACAAAAAAATTGAGCCGCGCAACAACAAGCAGCAGGC
CGTTTCCTCCATACGGAAACAGCCAGCCGCGGGTGGTTCGCGCTCCCACA
CCGAGGACGCTACGAGAGAGGGAGTTCGACAGGTCGAGGAACAGATGTGA
GTGTGTGTGGCCAGCTTGTGTTCGGCATTGTGTGGTCTTGTTTACGCATG
GCCGGCATCACGAATACAGCAGCGGCGTGCAAGCTGCAGGGTTGGTACTG
CTGTAAGAGCAGGGACGGAAAAAGTTTTCTCATGCATACCTTGAACAACA
CCGACCAGACAATTTTTGGTGGTCAGTCCGTGTGGGGTCATGCAGCCCGA
GCTACGTCAGGTCGCATGTGGTGTGCTCCGGTCCTCCTCGTCCCGCAAGC
TTGCCTAGTAGCACCGCGTGCCGCATCACATCTTTCGCGGTTGGTTGTGT
CGGCATTGTGCACGTTCATTTTTTTCCGCTCAAATCCGAACGAACAAACC
CATGGGCGGTGCACTCGCTACGGCGGTTGCTTACGTATACCTTGCACGCA
GCGCTGCCTCTAAAATATGTCGGGCATGGGACTACATCCAGAGGCGAGAA
GAACAGCTCTGCAATCATCGCCACGGCCCGCATTAATCGCTCTCATTCAC
CCGAGAGTTCCATTCTGGGCACAGCACCTTGGAAGCGAGCGGGACAATCG
CAATTGTTGCCCCAGACCAGCAGTCGTCGTCACCAACCACAGCAGCAACA
GCAGCAGCAGCAGCAGCAGGTCTTGGGCTGCACATACAATATTATCACTG
CTTCAAGTTGTATGTAGGAGGGGACGAGCGACAAAACGCGGCTAGGTCCC
GACAGCAACAAGAGTAAGAGCTAGATCATTGCCCCTCCTGTATATCTCTT
TCTAATGTCTCTTCGGTATTGCCGCATACTCATCTCTTCGGTGTACATGT
ATTGCCGGATGCGCGTCATGCCAACACAACGATGGGAATTGATGGGAACC
AAAAAAGTTAAATGACCCGCTCGCTCATGCACGCCATCTCCTCTCCCTGT
GACCGAATTGACCGAAAAATTGCGAAATTGCCGAAAAAAAAAGGCCCGAA
CTCAGAGCCTTGTATGCTGTATGCAAGTGTTCGGGGTGGACAAATGTGCG
CGTTCCTCTGTTCTGTACACCTTCTTCATCTCCGCAAATCATTGGGGCTG
TTCCTTTCTTCGGAAATTCAACTTAACAATACAAAGTGCATCAAACTCGG
GGTATGTCACATGATCGCAATCCAACCAATTGATTACCCCGAATTTACTG
GTGTTGGTCTTACATGCATATGATGTGCAATCTATATAAATAGGTGCGTG
TGCATTGCAATGTGCGGCGGATAGATGGAGCAACAAATGGATGTCAGTGA
TGCGTTCGTGTGCAATGGCCCGACACACCACCACAACAGTGCTGGCGGTG
CCTGCCTGTACCGACCACGTACTTGTGTATGAAAGCAGGGACCAACTTCA
TTTTATAAATCCAGAGTGAGTCGGTCCCCTTTCCCGTGCGGATCGGCCTG
CTGTGGTGGTAGTGGATTGTACATTTGGTCCATACGCACGAATCTCCACC
GATGGTATCATTGTCATAGGACAACTGGCATTCGTTCCTGCCTGGCGCGT
GGGTTCGCTGGAAGGTTTGGCGTCTCATGCCCTGTACATCGCGTGATGCC
TGTCGTCGGGATATCCTGCCGCATTTCATTAGGAGAGCAGGAAACGTACT
TGCGGTTGTTGTTTGCGGAGCCGAGGGTGTGCGAACCTGCGAAATACATC
CGTGGGTGACACAAGGCATCACACCCCCTGGACTGATTTTCAAAGACCGT
TTTACTCCACATCAAAAAAGAGTGACGATGCGGAAAATAACCGCGTTAGG
GGCTTCTCGTTGAGCTTTCCGAAACGTACCGTTTGATTTTATTCATCCTC
TTCGTAGTCGAGCTTTGAAAATCTGTGCACGGGGGGGTGCCATCTTACGT
CACATTCGGTAAACACCACCTGCAAGATATGCGCGCACCGTTTAACTCTC
GCTCTCTACTCCTATGGATGCCTTGATACCGACTTTGGTTTCATTTCAGT
CAAGTCGATATTTTCTCTCGCTCACCTTGCCCTCCGTCTTGCTAACCCCC
CCCCCACCCTCTCCCTCCGTCTTGGAGAACTCGCCACCCCTCCCGTCTCC
CTCCACTTACTGAACCCCCCCCTCCCCCCCCCTATCTTCACGCCTTCCCG
GCTGCCTGCCTTTTGCGGTGTTTTTGGAATTCCACAGGCTACTTGAGAAG
AGTGTGGTCCCTTCGAGGGTTTCCAGAAACGAACGCGGAGGCGGTTGCCG
GCCTCCAGGGGCGGAAGCAGAACAAGCGATGCGAAGCAGGGGACAGACGA
CCCAGCGTGCCTGCCAGCCGGAGGCGAACGACGTTGCGCGGAGGAGGAGG
AGGAGAGCGCTCCCGGGTGGGGGCGAGAAACGAACGGCTCTGGAAGCTAG
AGATCAACGGCGATTCCGACCCGACGTCGCCGCCGGTAGGAGCGACACCG
CCAGCGCCACGGCGAGGCGGCGGCCTGCCGCCGCGATCGCCCGCCACTCC
CTGAGAAATGCCTTCCTGGTTCTCTTCGCCGCCATGCTCGCGGCGCCGCG
GATCGACAACCCGTCGAGCTCGACCGCGCGCTTGAGGGGGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig142:1835..4527+

>mRNA_E-siliculosus-1a_F_contig142.2477.1 ID=mRNA_E-siliculosus-1a_F_contig142.2477.1|Name=mRNA_E-siliculosus-1a_F_contig142.2477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig142:1835..4527+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGCACAGCCTGGACAAAAAAATTGAGCCGCGCAACAACAAGCAGCAGGC
CGTTTCCTCCATACGGAAACAGCCAGCCGCGGGTGGTTCGCGCTCCCACA
CCGAGGACGCTACGAGAGAGGGAGTTCGACAGGTCGAGGAACAGATTCGC
ACAGCCTGGACAAAAAAATTGAGCCGCGCAACAACAAGCAGCAGGCCGTT
TCCTCCATACGGAAACAGCCAGCCGCGGGTGGTTCGCGCTCCCACACCGA
GGACGCTACGAGAGAGGGAGTTCGACAGGTCGAGGAACAGATGCTACTTG
AGAAGAGTGTGGTCCCTTCGAGGGTTTCCAGAAACGAACGCGGAGGCGGT
TGCCGGCCTCCAGGGGCGGAAGCAGAACAAGCGATGCGAAGCAGGGGACA
GACGACCCAGCGTGCCTGCCAGCCGGAGGCGAACGACGTTGCGCGGAGGA
GGAGGAGGAGAGCGCTCCCGGGTGGGGGCGAGAAACGAACGGCTCTGGAA
GCTAGAGATCAACGGCGATTCCGACCCGACGTCGCCGCCGGTAGGAGCGA
CACCGCCAGCGCCACGGCGAGGCGGCGGCCTGCCGCCGCGATCGCCCGCC
ACTCCCTGAGAAATGCCTTCCTGGTTCTCTTCGCCGCCATGCTCGCGGCG
CCGCGGATCGACAACCCGTCGAGCTCGACCGCGCGCTTGAGGGGGGGGGC
TACTTGAGAAGAGTGTGGTCCCTTCGAGGGTTTCCAGAAACGAACGCGGA
GGCGGTTGCCGGCCTCCAGGGGCGGAAGCAGAACAAGCGATGCGAAGCAG
GGGACAGACGACCCAGCGTGCCTGCCAGCCGGAGGCGAACGACGTTGCGC
GGAGGAGGAGGAGGAGAGCGCTCCCGGGTGGGGGCGAGAAACGAACGGCT
CTGGAAGCTAGAGATCAACGGCGATTCCGACCCGACGTCGCCGCCGGTAG
GAGCGACACCGCCAGCGCCACGGCGAGGCGGCGGCCTGCCGCCGCGATCG
CCCGCCACTCCCTGAGAAATGCCTTCCTGGTTCTCTTCGCCGCCATGCTC
GCGGCGCCGCGGATCGACAACCCGTCGAGCTCGACCGCGCGCTTGAGGGG
GGGG
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