mRNA_E-siliculosus-1a_F_contig1417.2463.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1417.2463.1
Unique NamemRNA_E-siliculosus-1a_F_contig1417.2463.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: D7FH71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH71_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.640e-83
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 1 
Query:    1 QAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMAKTSGVCVGSDMKATLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAREASGVAGSSGTPCCNSATQA 423
            QAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANE+IRYGRDRMAK SGVCVGSD+KAT AFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGA+EASGVAGSSGTPCCNSATQA
Sbjct:   66 QAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRMAKASGVCVGSDVKATFAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSGTPCCNSATQA 206
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: D7FWU3_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWU3_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 7.380e-65
Identity = 115/142 (80.99%), Postives = 125/142 (88.03%), Query Frame = 1 
Query:    1 QAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMAKTSGVCVGSDMKATLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKD-GAREASGVAGSSGTPCCNSATQA 423
            Q+ATSASV CILFLFEGAGVDTKTKYAFAALGAF MGFANE+IRYGRDRMAKTS V + SD+K T AFAVQ++LAYMLMLLVMLYEYVILIMIISGLA GHL+TLR SAGRRRAAL+D GA+    V GSSGTPCCN+ T A
Sbjct:   39 QSATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGRDRMAKTSDVSLASDLKMTAAFAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDTVA 180
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: A0A819B819_9BILA (Copper transport protein n=7 Tax=Adineta steineri TaxID=433720 RepID=A0A819B819_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 1.510e-12
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   28 CILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMAK----TSGVCVGSDMKATLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLV 309
            CILFLF+G  VDT  KYAF  +G  CMG  N  + Y R  +      TS + +   +  +L +A+Q+ LAY +MLLVM YE  I I +I GL  GH +
Sbjct:   26 CILFLFQGWNVDTHVKYAFMLIGVICMGLLNGALAYIRHCLVNNSKHTSSLLI-HQIYLSLLYAIQIVLAYWMMLLVMTYETGIFISLIGGLVLGHFI 122
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: A0A815NM06_9BILA (Copper transport protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815NM06_9BILA)

HSP 1 Score: 70.1 bits (170), Expect = 2.570e-11
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   28 CILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMAK----TSGVCVGSDMKATLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLV 309
            CILFLF+G  VDT  KYAF  +G  CMG  N  + Y R  +      TS + +   +  +L +A+Q+ LAY +MLLVM YE  I I +I GL  GH +
Sbjct:  302 CILFLFQGWNVDTHVKYAFMLIGVICMGLLNGALAYVRHCLVNNSKHTSSLFI-HQIYLSLLYAIQIVLAYWMMLLVMTYETGIFISLICGLVLGHFI 398
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: W7TTP6_9STRA (Copper transport protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTP6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.050e-10
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   28 CILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMA------------KTSGVCVGSDMKA--------TLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGH 303
            CIL+LF+GA V+T  KYA A +G F + F+ E +R+ R  M             K   V  G  ++A         L F V MF+AY++MLLVMLYE+ I I ++ GLAAG+
Sbjct:   33 CILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGY 144
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: W7U9L9_9STRA (Copper transport protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9L9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.140e-10
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   28 CILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMA------------KTSGVCVGSDMKA--------TLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGH 303
            CIL+LF+GA V+T  KYA A +G F + F+ E +R+ R  M             K   V  G  ++A         L F V MF+AY++MLLVMLYE+ I I ++ GLAAG+
Sbjct:   91 CILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGY 202
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: A0A835YUT5_9STRA (Copper transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.440e-10
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   28 CILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMAKTSGV---CVGSDMKA-------TLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHL 306
            CI++LFEGA +DT  KY  A +G F + FANE IR+ R R          C  SDM A        L +  QM +AY LML+VM YE  +   I+ GL AG+L
Sbjct:   44 CIIWLFEGAVLDTAGKYTGAVIGTFLLAFANEGIRWLRSRAMSGKAPFTRCHLSDMPAFARDVVLALMYGFQMLIAYWLMLIVMTYEVFLFTAILLGLTAGYL 146
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BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Match: A0A0L0D9P1_THETB (Copper transport protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9P1_THETB)

HSP 1 Score: 59.7 bits (143), Expect = 3.600e-8
Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:   28 CILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRMAKTSG-----------------VC------VGSDMKATLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRR 339
            CIL+LF+GA VDT  KYA A +G+F +  A   ++  R+R++  +                  +C      +G D+     FA+QM LAY +MLLVMLYE  I   II G     L+ +RL   RRR
Sbjct:   29 CILWLFQGAVVDTPGKYALACIGSFSLVLAMVFLQLVRERVSLWASRRSSSXXXXXXXXXXPSLCSGGLPMLGLDLAVAALFALQMVLAYWIMLLVMLYEAWIFTSIIIGFFVSQLLAIRL---RRR 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1417.2463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FH71_ECTSI1.640e-8396.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWU3_ECTSI7.380e-6580.99Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A819B819_9BILA1.510e-1243.88Copper transport protein n=7 Tax=Adineta steineri ... [more]
A0A815NM06_9BILA2.570e-1143.88Copper transport protein n=1 Tax=Adineta steineri ... [more]
W7TTP6_9STRA1.050e-1041.07Copper transport protein n=1 Tax=Nannochloropsis g... [more]
W7U9L9_9STRA2.140e-1041.07Copper transport protein n=3 Tax=Monodopsidaceae T... [more]
A0A835YUT5_9STRA2.440e-1043.69Copper transport protein n=1 Tax=Tribonema minus T... [more]
A0A0L0D9P1_THETB3.600e-837.01Copper transport protein n=1 Tax=Thecamonas trahen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1417contigE-siliculosus-1a_F_contig1417:84..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size426
Model size426
Exons3
Ec32 orthologEc-13_001020.1
Ec32 ortholog descriptionCtr copper transporter
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2E44A@1,2SB2P@2759
EggNOG free text desc.Ctr copper transporter family
Seed eggNOG ortholog2880.D7FH71
Seed ortholog evalue1e-64
Seed ortholog score252.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1417.2463.1prot_E-siliculosus-1a_F_contig1417.2463.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1417 84..2108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.735242-CDS-E-siliculosus-1a_F_contig1417:83..2141622927930.735242-CDS-E-siliculosus-1a_F_contig1417:83..214Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 84..214 +
1696318742.3453364-CDS-E-siliculosus-1a_F_contig1417:83..2141696318742.3453364-CDS-E-siliculosus-1a_F_contig1417:83..214Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 84..214 +
1622927930.7540114-CDS-E-siliculosus-1a_F_contig1417:1328..14341622927930.7540114-CDS-E-siliculosus-1a_F_contig1417:1328..1434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 1329..1434 +
1696318742.3670778-CDS-E-siliculosus-1a_F_contig1417:1328..14341696318742.3670778-CDS-E-siliculosus-1a_F_contig1417:1328..1434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 1329..1434 +
1622927930.7696416-CDS-E-siliculosus-1a_F_contig1417:1919..21081622927930.7696416-CDS-E-siliculosus-1a_F_contig1417:1919..2108Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 1920..2108 +
1696318742.3755717-CDS-E-siliculosus-1a_F_contig1417:1919..21081696318742.3755717-CDS-E-siliculosus-1a_F_contig1417:1919..2108Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 1920..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1417.2463.1

>prot_E-siliculosus-1a_F_contig1417.2463.1 ID=prot_E-siliculosus-1a_F_contig1417.2463.1|Name=mRNA_E-siliculosus-1a_F_contig1417.2463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
QAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEIIRYGRDRM
AKTSGVCVGSDMKATLAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAG
HLVTLRLSAGRRRAALKDGAREASGVAGSSGTPCCNSATQA*
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mRNA from alignment at E-siliculosus-1a_F_contig1417:84..2108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1417.2463.1 ID=mRNA_E-siliculosus-1a_F_contig1417.2463.1|Name=mRNA_E-siliculosus-1a_F_contig1417.2463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2025bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1417:84..2108+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGCTACCAGTGCGAGCGTGCGGTGCATCCTCTTCCTGTTCGAGGG
TGCCGGTGTAGACACCAAAACGAAGTACGCCTTCGCGGCGCTGGGGGCCT
TCTGCATGGGCTTCGCCAATGAGATCATCCGGTGAGCGCCCCCATCACCA
CCAGGCGTAGGCTCGACGGAGCAGCTACTTTTACGTTGCAGGGTTGTTTG
AGACATCCTCTTGTTAGGGTGAGGCTTCTCACGTCCGAAGAGTGTTGCAT
CGTTGTTGTCCTCAGCTGCCAAAAACACACGGGCGGATGGAACTCAGCAG
CACCGCCAGTAGGCTCGGGCAACACCTCCTTGTGTTGCCGGGTTGTTTTG
AGACATCTCCTGGTAAGAGCAGGGCCTCATGTCAGGAGAGGTTCTCCGTA
GCCTGAGACTTCGTGTCGTCGTTGTCCTCACGTGCCGAAACTCGGATGGG
ACTCAGCAGCCACACCACCAGGCGTAGGCTCAGACAAGAAGCTCTCTTAC
GTTGCTGGGAAGTTGAGGGATCCCCTTGTAATGGCGGGGCTTTTCGTGCC
CCGAAGACTGTTGCGTCGTTGTTGCCCTCATGTCTGCTCAGCTGTCAACA
ACCGGGCGGATGGGACTTAGCAGCACCACTACCACGACACGTAGGTTCGG
CCAACGAGCTCCTTACGTTGCCGGGTTGTTTGACATATCTCCTTGAAAGA
GCCGGGCTCTTCATGGTTGGAGATTTTTGCGTCTTTGTCGTCGCTTGGCT
GCCGAAAACACAGGCGGATGGTACAATACTCCGAAAATCTTGGCCATTGT
CGACTCGACTCCCACCAACGCCGCCTGTATCTGCCTCCGCGCCTAGCCTA
GGCTAGCGCACCTTCCCGCGATACGGAGGGGGTCGCTGTTTAGTGCCGAT
AATTGCCCAGAAGATTCACCGGCACTATATATTCGAAGTACTGACCATGA
CATCGAAATTCAGTGTGGGCCAGCCGAAAGCACCGGCACCAGCACTGCTG
TTCAACCGGCACAAAGCAGGGACCCCCCTCAGTAGGTAGATTGACGAGGT
TTTTTAACCCGGGGCCGATGTTAATTTGTGTTTCTGGGGGGAAGCGAATA
ACGCTCACAGATCGACGAACAGTTATTTTTCAAGTTCTTCATCTGCTCGC
GCTCTTTCCAGCACACAAACCCATCTTCTTCTGTCAACCTGGCCCTTTTT
TTTTTTTTTCCCCCGTGATGTCATGACTGGAATTGAAAACCGCAGGTACG
GGCGCGACAGGATGGCGAAGACGTCGGGGGTATGCGTGGGGTCGGACATG
AAGGCGACTCTTGCTTTCGCCGTGCAGATGTTCCTGGCGTACATGCTCAT
GGTAAGCGTGGGACCAAGCGAGCCGTTGCGTGTGCGTGCGTGAGTGAGTG
AGTTTCGCGTTGGCGGTAGAGGAGAAGTTTTTCTTGTACAATGTGCGTGT
GGGTATATTAGTATCGGGCGATAGATGAACGGGGAAAGAACGCAAAAAAC
ACACGTCGGGCATTCGGGTTAATTCTCGGACATTCTGCTACTTCGGTAGG
GATTTGGTGGGTTCGCGGTAGACTATTGCTCGCACGTAAAACCACCTTGT
TGCCCCCCCCCCCCCCGCCTTTTCTCCTGTGCGTTGCCCCCTGATGGCAA
CTTCGTGGTGATGCTCCATGGATATGTGATATTGATCCTAACCATCTCGC
TCCCCTACTCTTCCACGTCCTTCTCAACCGTCATAATCACAGCTGCTGGC
GATGCTCTACGAACACGTCATCCATATCTTGATCATGTCGTGCCCCCCCC
CCCCCGTCGCGTGTGCGTTGCCCCTGATCGTCACAGCTTCTGGTGATGCT
CTACGAGTACGTGATCCTCATCATGATCATCTCGGGCCTCGCCGCGGGGC
ACCTGGTGACCCTCCGGCTGTCCGCCGGCAGGCGCCGAGCAGCGCTCAAG
GACGGCGCCAGGGAGGCCTCTGGAGTCGCGGGCAGCTCCGGCACGCCTTG
CTGCAACTCGGCAACGCAGGCGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1417:84..2108+

>mRNA_E-siliculosus-1a_F_contig1417.2463.1 ID=mRNA_E-siliculosus-1a_F_contig1417.2463.1|Name=mRNA_E-siliculosus-1a_F_contig1417.2463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1417:84..2108+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGCTACCAGTGCGAGCGTGCGGTGCATCCTCTTCCTGTTCGAGGG
TGCCGGTGTAGACACCAAAACGAAGTACGCCTTCGCGGCGCTGGGGGCCT
TCTGCATGGGCTTCGCCAATGAGATCATCCGCAGGCGGCTACCAGTGCGA
GCGTGCGGTGCATCCTCTTCCTGTTCGAGGGTGCCGGTGTAGACACCAAA
ACGAAGTACGCCTTCGCGGCGCTGGGGGCCTTCTGCATGGGCTTCGCCAA
TGAGATCATCCGGTACGGGCGCGACAGGATGGCGAAGACGTCGGGGGTAT
GCGTGGGGTCGGACATGAAGGCGACTCTTGCTTTCGCCGTGCAGATGTTC
CTGGCGTACATGCTCATGGTACGGGCGCGACAGGATGGCGAAGACGTCGG
GGGTATGCGTGGGGTCGGACATGAAGGCGACTCTTGCTTTCGCCGTGCAG
ATGTTCCTGGCGTACATGCTCATGCTTCTGGTGATGCTCTACGAGTACGT
GATCCTCATCATGATCATCTCGGGCCTCGCCGCGGGGCACCTGGTGACCC
TCCGGCTGTCCGCCGGCAGGCGCCGAGCAGCGCTCAAGGACGGCGCCAGG
GAGGCCTCTGGAGTCGCGGGCAGCTCCGGCACGCCTTGCTGCAACTCGGC
AACGCAGGCGTAACTTCTGGTGATGCTCTACGAGTACGTGATCCTCATCA
TGATCATCTCGGGCCTCGCCGCGGGGCACCTGGTGACCCTCCGGCTGTCC
GCCGGCAGGCGCCGAGCAGCGCTCAAGGACGGCGCCAGGGAGGCCTCTGG
AGTCGCGGGCAGCTCCGGCACGCCTTGCTGCAACTCGGCAACGCAGGCGT
AA
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