mRNA_E-siliculosus-1a_F_contig1413.2448.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1413.2448.1
Unique NamemRNA_E-siliculosus-1a_F_contig1413.2448.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1413.2448.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 555 bits (1431), Expect = 5.050e-184
Identity = 313/342 (91.52%), Postives = 320/342 (93.57%), Query Frame = 1 
Query:    1 ETETTPQFSAARPALYAMAWAAMLEASGFEADSGGDVAAAFVQGLAAVYKAGVEEGAELCPGQEGEEERMRQLFETLDGLFAPRVAPASASGGGAPQATDPRRAVYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVVVDGSEEAXXXXXXXXXXXXGPGGVSVECVREAAAALSSVMSNGRVPKRDSAVALEGLLFDVSAPCVRRLEGLRKHKSGPDSAAAAAGAPPTRPSAAAMPGAAVASATDDAPVSSWPSLDGYSEVMQLVLALLTDGLPSVADPASFQQDQRDQERDKRLVSCLKVAIKGIGAVAECRRLKMAFLKKGLSLGSPQAAGSETT 1026
            ETETTPQFSAARPALYAMAWAAMLEAS FE DS GDVAAAFVQGLAAVYKAGVEEGAELCPGQEGE+ERMRQLFETLDGLF PRVAPA+ SGG APQATDPRRAVYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVVVDGSEEA   XXXXXXX  GPGGVSVECVREAAAALSSVMSNGRVPKRDSAVALEGLLFDVSAPC+RRLEGLRKHKSGPDSAAAAA APPT+ SAAAMPGAAVASATD  PVSSWPSLD +SEVM+LVLALL DGLPSVAD ASFQQ +RDQERDKRLVSCLKVAIKGIGAVAECRRLKM FLKK LSLGS QAAGSETT
Sbjct:  685 ETETTPQFSAARPALYAMAWAAMLEASRFETDSDGDVAAAFVQGLAAVYKAGVEEGAELCPGQEGEDERMRQLFETLDGLFPPRVAPAAGSGGCAPQATDPRRAVYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVVVDGSEEASPAXXXXXXX--GPGGVSVECVREAAAALSSVMSNGRVPKRDSAVALEGLLFDVSAPCIRRLEGLRKHKSGPDSAAAAAEAPPTQLSAAAMPGAAVASATD-LPVSSWPSLDCFSEVMRLVLALLNDGLPSVADRASFQQAERDQERDKRLVSCLKVAIKGIGAVAECRRLKMGFLKKDLSLGSRQAAGSETT 1023
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BLAST of mRNA_E-siliculosus-1a_F_contig1413.2448.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 2.470e-153
Identity = 276/301 (91.69%), Postives = 280/301 (93.02%), Query Frame = 1 
Query:  124 VQGLAAVYKAGVEEGAELCPGQEGEEERMRQLFETLDGLFAPRVAPASASGGGAPQATDPRRAVYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVVVDGSEEAXXXXXXXXXXXX-GPGGVSVECVREAAAALSSVMSNGRVPKRDSAVALEGLLFDVSAPCVRRLEGLRKHKSGPDSAAAAAGAPPTRPSAAAMPGAAVASATDDAPVSSWPSLDGYSEVMQLVLALLTDGLPSVADPASFQQDQRDQERDKRLVSCLKVAIKGIGAVAECRRLKMAFLKKGLSLGSPQAAGSET 1023
            VQGLAAVYKAGVEEGAELCPGQEGEEERMRQLFETLDGLFAPRVAPAS  GGGAPQATDPRRAVYMPKVTPGQRAILEFLQ+DLRTGWRLAVRLLAKYSVVVDGSEE XXXXXXXXXXXX GPGGVSVECVRE AAALSSVMSNGRVPKRDSAVALEGLLFDVSAPCVRRLEGLRKH+S PDSAAA       +    AMPGAAVASATDDAPVSSWPSLD YSEVMQLVLALLTDGLPSVADPASFQQ +RDQERDK LVSCLKVAIKGIGAVAECRRLKMAFLKK LSLGSPQAAGSET
Sbjct: 1564 VQGLAAVYKAGVEEGAELCPGQEGEEERMRQLFETLDGLFAPRVAPASGGGGGAPQATDPRRAVYMPKVTPGQRAILEFLQEDLRTGWRLAVRLLAKYSVVVDGSEEXXXXXXXXXXXXXXGPGGVSVECVREVAAALSSVMSNGRVPKRDSAVALEGLLFDVSAPCVRRLEGLRKHRSRPDSAAAXXXXXXXQRXXXAMPGAAVASATDDAPVSSWPSLDSYSEVMQLVLALLTDGLPSVADPASFQQGKRDQERDKSLVSCLKVAIKGIGAVAECRRLKMAFLKKDLSLGSPQAAGSET 1864
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BLAST of mRNA_E-siliculosus-1a_F_contig1413.2448.1 vs. uniprot
Match: A0A835YQS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.090e-18
Identity = 81/227 (35.68%), Postives = 106/227 (46.70%), Query Frame = 1 
Query:   22 FSAARPALYAMAWAAMLEASGFEADSGGDVAAAFVQGLAAVYKAGVEEGAELCPGQEGEEERMR--QLFETLDGLFAPRVAPASASGGGAPQATDPRRA-VYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVVVDGSEEAXXXXXXXXXXXXGPGGVSVECVREAAAALSSVMSNGRVPKRDSAVALEGLLFDVSAPCVRRLEGLRKHKSGPDSAAAAAGAP 693
            F   R  L+A AW AM +A+ FE+D  G+VAAAF +    V+++G         G   + +     +L + LD L  PR A     G G       RR       +T  QR ILEF++D++   W  AVRLLA Y+                     GP GVS  C REAA  L S+M  GRVP    A AL GLL  +S PC    E L + + G  ++  AAG P
Sbjct: 1383 FEEQREGLWAQAWRAMRDATSFESDEFGEVAAAFARAYTQVHRSGAAAEFAAANGSSAQHDGSAAVELLDALDSLMVPRRAQPLRDGDGPTAGGQLRRTGTGGHTLTTAQRLILEFIKDEVCGCWDRAVRLLANYAF--------------------GPAGVSEACAREAAQVLISLMG-GRVPAEARAAALPGLLTHMSRPC----EALLRPEMGRAASVRAAGQP 1584
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1413.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KPX0_9PHAE5.050e-18491.52Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LQH8_ECTSI2.470e-15391.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQS4_9STRA1.090e-1835.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1413contigE-siliculosus-1a_F_contig1413:30882..32285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1029
Model size1033
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.KLT
EggNOG OGsKOG1848@1,KOG1848@2759
EggNOG free text desc.protein transport
KEGG Pathwayko04144,map04144
KEGG koko:K18466
Seed eggNOG ortholog2880.D8LQH8
Seed ortholog evalue4.2e-136
Seed ortholog score491.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927928.2206864-CDS-E-siliculosus-1a_F_contig1413:30883..315851622927928.2206864-CDS-E-siliculosus-1a_F_contig1413:30883..31585Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1413 30884..31585 -
1696318741.1815782-CDS-E-siliculosus-1a_F_contig1413:30883..315851696318741.1815782-CDS-E-siliculosus-1a_F_contig1413:30883..31585Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1413 30884..31585 -
1622927928.2317808-CDS-E-siliculosus-1a_F_contig1413:31958..322851622927928.2317808-CDS-E-siliculosus-1a_F_contig1413:31958..32285Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1413 31959..32285 -
1696318741.1934419-CDS-E-siliculosus-1a_F_contig1413:31958..322851696318741.1934419-CDS-E-siliculosus-1a_F_contig1413:31958..32285Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1413 31959..32285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1413.2448.1prot_E-siliculosus-1a_F_contig1413.2448.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1413 30884..32285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1413.2448.1

>prot_E-siliculosus-1a_F_contig1413.2448.1 ID=prot_E-siliculosus-1a_F_contig1413.2448.1|Name=mRNA_E-siliculosus-1a_F_contig1413.2448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=343bp
ETETTPQFSAARPALYAMAWAAMLEASGFEADSGGDVAAAFVQGLAAVYK
AGVEEGAELCPGQEGEEERMRQLFETLDGLFAPRVAPASASGGGAPQATD
PRRAVYMPKVTPGQRAILEFLQDDLRTGWRLAVRLLAKYSVVVDGSEEAS
SAAAATAAAAAGPGGVSVECVREAAAALSSVMSNGRVPKRDSAVALEGLL
FDVSAPCVRRLEGLRKHKSGPDSAAAAAGAPPTRPSAAAMPGAAVASATD
DAPVSSWPSLDGYSEVMQLVLALLTDGLPSVADPASFQQDQRDQERDKRL
VSCLKVAIKGIGAVAECRRLKMAFLKKGLSLGSPQAAGSETTP
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mRNA from alignment at E-siliculosus-1a_F_contig1413:30882..32285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1413.2448.1 ID=mRNA_E-siliculosus-1a_F_contig1413.2448.1|Name=mRNA_E-siliculosus-1a_F_contig1413.2448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1404bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1413:30882..32285- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAACGGAGACAACCCCTCAGTTTTCGGCCGCGAGACCGGCGCTGTACGC
GATGGCGTGGGCGGCAATGCTGGAGGCGTCCGGGTTTGAGGCGGACTCCG
GCGGGGACGTTGCCGCCGCGTTCGTGCAGGGGCTCGCGGCCGTCTACAAG
GCGGGGGTGGAGGAAGGGGCGGAGCTGTGTCCTGGGCAGGAGGGAGAGGA
GGAGAGGATGCGGCAGCTGTTCGAGACGCTGGACGGACTCTTTGCTCCGC
GCGTTGCCCCGGCCTCCGCTAGTGGCGGTGGTGCCCCTCAAGCCACCGAC
CCGCGGCGCGCCGTGTACATGCCAAAGGTAGAATAGAAAGAGGGTTTTGT
TAGCCGCGGGTGTGTAGACTTGGCCTGGTCGTTAGGCTTCCCACTAAGCT
GTTTGGGCTTTGGACGCTGTTTGGGCTTAGGCTGCCCCGGGGTGCCCGGT
GTACATGCCAAAGGTAGAAGAATGTTCTTTCGCCGCTGGTGTGTATGCTT
GGCCTGGTTGTTGGGCTTCCCACTAAACCTGATGCTTGCGCGTGGAGGTT
GTTTTGTTTTTTGGTGACCGCAGGAATTTTTCGTGCCCGATCGGTCCGAA
ACCCTCATGCAGCCGGCACACACACTCGTGGGTACACGTGGCATCAGGCG
GTCGGACGTTTTCATCATCGTGCCCTGTACACACGCTTGTGTATTGACAG
GTCACGCCGGGGCAACGCGCCATCTTAGAGTTCTTGCAGGACGACCTGCG
CACGGGGTGGCGGTTGGCCGTGAGGTTGCTCGCCAAGTACAGCGTCGTCG
TTGACGGTAGCGAGGAGGCATCATCCGCGGCGGCGGCGACGGCGGCGGCG
GCTGCCGGGCCTGGCGGTGTGAGCGTTGAGTGCGTGAGGGAAGCGGCCGC
TGCCCTGTCGTCCGTGATGTCGAACGGGAGGGTGCCGAAGCGGGACAGCG
CTGTAGCCCTGGAAGGGCTGCTGTTCGACGTGTCCGCCCCCTGTGTGCGG
AGATTGGAAGGTCTGCGGAAGCACAAGTCGGGGCCGGATAGCGCAGCAGC
TGCAGCAGGGGCACCGCCAACACGGCCGTCGGCAGCAGCGATGCCGGGGG
CCGCCGTGGCAAGCGCGACTGACGACGCGCCCGTGTCGAGCTGGCCGTCC
CTGGATGGCTACTCGGAGGTGATGCAGCTGGTGCTGGCTCTGCTGACCGA
CGGCCTCCCCAGCGTTGCCGACCCGGCATCCTTCCAGCAGGACCAACGCG
ATCAAGAGAGAGACAAGCGCCTCGTGAGCTGTCTCAAGGTGGCCATCAAG
GGGATCGGTGCCGTTGCCGAGTGCCGGAGGCTTAAGATGGCTTTCCTGAA
GAAGGGCTTGTCCTTGGGGTCCCCGCAAGCGGCGGGATCGGAGACGACGC
CGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1413:30882..32285-

>mRNA_E-siliculosus-1a_F_contig1413.2448.1 ID=mRNA_E-siliculosus-1a_F_contig1413.2448.1|Name=mRNA_E-siliculosus-1a_F_contig1413.2448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2058bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1413:30882..32285- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAACGGAGACAACCCCTCAGTTTTCGGCCGCGAGACCGGCGCTGTACGC
GATGGCGTGGGCGGCAATGCTGGAGGCGTCCGGGTTTGAGGCGGACTCCG
GCGGGGACGTTGCCGCCGCGTTCGTGCAGGGGCTCGCGGCCGTCTACAAG
GCGGGGGTGGAGGAAGGGGCGGAGCTGTGTCCTGGGCAGGAGGGAGAGGA
GGAGAGGATGCGGCAGCTGTTCGAGACGCTGGACGGACTCTTTGCTCCGC
GCGTTGCCCCGGCCTCCGCTAGTGGCGGTGGTGCCCCTCAAGCCACCGAC
CCGCGGCGCGCCGTGTACATGCCAAAGGAAACGGAGACAACCCCTCAGTT
TTCGGCCGCGAGACCGGCGCTGTACGCGATGGCGTGGGCGGCAATGCTGG
AGGCGTCCGGGTTTGAGGCGGACTCCGGCGGGGACGTTGCCGCCGCGTTC
GTGCAGGGGCTCGCGGCCGTCTACAAGGCGGGGGTGGAGGAAGGGGCGGA
GCTGTGTCCTGGGCAGGAGGGAGAGGAGGAGAGGATGCGGCAGCTGTTCG
AGACGCTGGACGGACTCTTTGCTCCGCGCGTTGCCCCGGCCTCCGCTAGT
GGCGGTGGTGCCCCTCAAGCCACCGACCCGCGGCGCGCCGTGTACATGCC
AAAGGTCACGCCGGGGCAACGCGCCATCTTAGAGTTCTTGCAGGACGACC
TGCGCACGGGGTGGCGGTTGGCCGTGAGGTTGCTCGCCAAGTACAGCGTC
GTCGTTGACGGTAGCGAGGAGGCATCATCCGCGGCGGCGGCGACGGCGGC
GGCGGCTGCCGGGCCTGGCGGTGTGAGCGTTGAGTGCGTGAGGGAAGCGG
CCGCTGCCCTGTCGTCCGTGATGTCGAACGGGAGGGTGCCGAAGCGGGAC
AGCGCTGTAGCCCTGGAAGGGCTGCTGTTCGACGTGTCCGCCCCCTGTGT
GCGGAGATTGGAAGGTCTGCGGAAGCACAAGTCGGGGCCGGATAGCGCAG
CAGCTGCAGCAGGGGCACCGCCAACACGGCCGTCGGCAGCAGCGATGCCG
GGGGCCGCCGTGGCAAGCGCGACTGACGACGCGCCCGTGTCGAGCTGGCC
GTCCCTGGATGGCTACTCGGAGGTGATGCAGCTGGTGCTGGCTCTGCTGA
CCGACGGCCTCCCCAGCGTTGCCGACCCGGCATCCTTCCAGCAGGACCAA
CGCGATCAAGAGAGAGACAAGCGCCTCGTGAGCTGTCTCAAGGTGGCCAT
CAAGGGGATCGGTGCCGTTGCCGAGTGCCGGAGGCTTAAGATGGCTTTCC
TGAAGAAGGGCTTGTCCTTGGGGTCCCCGCAAGCGGCGGGATCGGAGACG
ACGCCGGTCACGCCGGGGCAACGCGCCATCTTAGAGTTCTTGCAGGACGA
CCTGCGCACGGGGTGGCGGTTGGCCGTGAGGTTGCTCGCCAAGTACAGCG
TCGTCGTTGACGGTAGCGAGGAGGCATCATCCGCGGCGGCGGCGACGGCG
GCGGCGGCTGCCGGGCCTGGCGGTGTGAGCGTTGAGTGCGTGAGGGAAGC
GGCCGCTGCCCTGTCGTCCGTGATGTCGAACGGGAGGGTGCCGAAGCGGG
ACAGCGCTGTAGCCCTGGAAGGGCTGCTGTTCGACGTGTCCGCCCCCTGT
GTGCGGAGATTGGAAGGTCTGCGGAAGCACAAGTCGGGGCCGGATAGCGC
AGCAGCTGCAGCAGGGGCACCGCCAACACGGCCGTCGGCAGCAGCGATGC
CGGGGGCCGCCGTGGCAAGCGCGACTGACGACGCGCCCGTGTCGAGCTGG
CCGTCCCTGGATGGCTACTCGGAGGTGATGCAGCTGGTGCTGGCTCTGCT
GACCGACGGCCTCCCCAGCGTTGCCGACCCGGCATCCTTCCAGCAGGACC
AACGCGATCAAGAGAGAGACAAGCGCCTCGTGAGCTGTCTCAAGGTGGCC
ATCAAGGGGATCGGTGCCGTTGCCGAGTGCCGGAGGCTTAAGATGGCTTT
CCTGAAGAAGGGCTTGTCCTTGGGGTCCCCGCAAGCGGCGGGATCGGAGA
CGACGCCG
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