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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1413.2447.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE) HSP 1 Score: 437 bits (1123), Expect = 1.040e-139 Identity = 241/289 (83.39%), Postives = 251/289 (86.85%), Query Frame = 1
Query: 4 RGFPLLLREALVLVTRAVRSELVPLVHKGSEDARDAARALIDTLGAIALVSTVDTPQPXXXXXXREAXXXXXXXXXXXXXXXSS-VAAADNDCAVENSASSDAFGLAVHELAAMCSEGASAGGWAQLGLPLRRRACWHLLRCVWSTTYRFRKLEDEVDAADAPARTPPEDMARLRYSLALRADRCTCVLATVGKVRLPPALLTPRFKKLVATKQGQENLPLLDTQARATATASPALTGAGGVEGDGEQAGPEDAVWASMAEEGEENAAVDTSSSSGVDATSRSEAVEGG 867
RGFPLLLREAL+LVTR VRSELVPLVH+GSEDARDAARALIDTLGAIALVS VDTPQP REA S AAAD+D AVENSASSDAFGLAVHELAAMCSEG+SAGGWAQLGLPLRRRACWHLLRCVWSTT+RFRKLEDEVDAADAPARTPPEDMARLR SLALRADRC VLATVGKVRLPP LLTPRFKKLVATKQGQ+NLPL++TQARA T SPAL GAGGV+GDGEQAGPEDAVWASMAEEGE+NAAVD SS GVDATSRSEAVEGG
Sbjct: 1036 RGFPLLLREALMLVTRTVRSELVPLVHEGSEDARDAARALIDTLGAIALVSAVDTPQPPTPTPSREAAHSTSGGSSSANSSGDSYAAAADSDRAVENSASSDAFGLAVHELAAMCSEGSSAGGWAQLGLPLRRRACWHLLRCVWSTTHRFRKLEDEVDAADAPARTPPEDMARLRSSLALRADRCASVLATVGKVRLPPTLLTPRFKKLVATKQGQDNLPLVNTQARAATTGSPALAGAGGVDGDGEQAGPEDAVWASMAEEGEQNAAVD-SSILGVDATSRSEAVEGG 1323
BLAST of mRNA_E-siliculosus-1a_F_contig1413.2447.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI) HSP 1 Score: 389 bits (1000), Expect = 2.950e-120 Identity = 215/271 (79.34%), Postives = 219/271 (80.81%), Query Frame = 1
Query: 1 ARGFPLLLREALVLVTRAVRSELVPLVHKGSEDARDAARALIDTLGAIALVSTVDTPQPXXXXXXREAXXXXXXXXXXXXXXXSSVAAADNDCAVENSASSDAFGLAVHELAAMCSEGASAGGWAQLGLPLRRRACWHLLRCVWSTTYRFRKLEDEVDAADAPARTPPEDMARLRYSLALRADRCTCVLATVGKVRLPPALLTPRFKKLVATKQGQENLPLLDTQAR-ATATASPALTGAGGVEGDGEQAGPEDAVWASMAEEGEENAAVD 810
ARGFPLLLREAL+LVTRAVRSELVPLVHKGSEDARDAARALIDTL D DCAVENSASSDAFGLAVHELAAMCSEGASAGGWAQLGLPLRRRACWHLLRC WSTTYRFRKLEDEVDAADAPARTPPEDMA+LR SLALRADRC CVLATVGKVRLPPALLTPRFKKLVATKQGQENLPLL+T+AR AT T SPAL GAGGVEGDGEQAGPEDAVWASMAEEGEENAAVD
Sbjct: 1877 ARGFPLLLREALMLVTRAVRSELVPLVHKGSEDARDAARALIDTL--------------------------------------------DGDCAVENSASSDAFGLAVHELAAMCSEGASAGGWAQLGLPLRRRACWHLLRCAWSTTYRFRKLEDEVDAADAPARTPPEDMAQLRSSLALRADRCACVLATVGKVRLPPALLTPRFKKLVATKQGQENLPLLNTEARRATTTGSPALAGAGGVEGDGEQAGPEDAVWASMAEEGEENAAVD 2103
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 888 |
| Model size | 891 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko00001,ko04131 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | KLT |
| EggNOG OGs | KOG1848@1,KOG1848@2759 |
| EggNOG free text desc. | protein transport |
| KEGG Pathway | ko04144,map04144 |
| KEGG ko | ko:K18466 |
| Seed eggNOG ortholog | 2880.D8LQH8 |
| Seed ortholog evalue | 5.1e-106 |
| Seed ortholog score | 391.0 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1413.2447.1 >prot_E-siliculosus-1a_F_contig1413.2447.1 ID=prot_E-siliculosus-1a_F_contig1413.2447.1|Name=mRNA_E-siliculosus-1a_F_contig1413.2447.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=296bp
ARGFPLLLREALVLVTRAVRSELVPLVHKGSEDARDAARALIDTLGAIAL
VSTVDTPQPPPPTPSREAAHSSSGGSSANSSGDSSVAAADNDCAVENSAS
SDAFGLAVHELAAMCSEGASAGGWAQLGLPLRRRACWHLLRCVWSTTYRF
RKLEDEVDAADAPARTPPEDMARLRYSLALRADRCTCVLATVGKVRLPPA
LLTPRFKKLVATKQGQENLPLLDTQARATATASPALTGAGGVEGDGEQAG
PEDAVWASMAEEGEENAAVDTSSSSGVDATSRSEAVEGGDKVEGGS back to topmRNA from alignment at E-siliculosus-1a_F_contig1413:27364..30853- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1413.2447.1 ID=mRNA_E-siliculosus-1a_F_contig1413.2447.1|Name=mRNA_E-siliculosus-1a_F_contig1413.2447.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3490bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1413:27364..30853- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCACGGGGGTTTCCGCTGCTGTTGCGCGAGGCGTTGGTGCTTGTGACGCG
CGCGGTGCGCTCCGAGCTGGTTCCGCTGGTGCACAAGGGCTCCGAAGACG
CTCGGGTGAGCTTTTTCTTTCTTTGTTTTTTTCTTATTTATTTTTTTTCT
TCCAAAAACACAACAATTTCATCTCTTCCACAGATACGAGTGCGGGACAG
ATTAGCATAGTGGTCAGCCTCTTTTATTTCTATGGTTCCCTCAGTAGCTA
TAATTACGTCTCCCTTGTGCAAGCTTTGCTTTGGGGGACGTAGGAACATG
AGCTATTTCAAATGTGTCCATCCTCTTGGCCTTGTTTTGGCTCTGAATCG
AGTACAATCCAATCTCGATATCGTCATTATTGTATCATAGCCGTTTCTTT
GTCAACGATGCCGCTGTTCTCGTACAAGGCTCTCTGAGCTGTTAAAAAGT
CACACCTTGTGGGCTGCTGTTGGTCGATGCTTCTTGTTGCTCCCTATATC
ATCATGTTTGCCGTTTCTTGGCCAACGATGCCCCTGTTCTCGTACAAGCT
GTCTGAGCTGTTAAGAAGTCGCACCGTGTGGACTGCTGTTTGTCATGTTG
CTTTTTTGGAACTCCTGCTACTTGTCTTTTGTCGCGCATAATACCCTTGA
GCTGGTGATACCTCTACTAGCACGGCGTGTTGATGGCAACTCGCATGCTT
GACCTTCGCGCACTGTTCTCCTTGAGTCGACTGGCGGCAAGCCGCTTATC
GTGGCATGCTTCAGCAAACGTTTTCTTCCCAAGCCGGCAGTCACGCGCGC
ACACACACACACCTTCGTATAGGTGTTTATTCTGTTGCTACATACCGTTT
CTGTCTTTGATCCGGAGAATAGATTAATCTCCCCCATGCCGCCCCCTCAC
GGGACGGGGTCACAGTTAATGGCATTTAGAAATGTTTTGTGTTTTCAACG
GCACTGAGACTGACGTCTTTTCATTGGTCAGCCGGTTAGCGCGGTCGATG
CTATTAATAATAAATAATAATAACACACACACACCTTTCACGGCGTGTTA
TCACGTTATCACCACAGCCTTGTCCTCGGCCGGCCAACAACAGGGACAGG
GGCGACGCTTTTTTTTTGTCTCTCCCCGTTCCGAAAACCCTCCGTTGCCC
CACGACACGATCCTGCAGGACGCGGCCCGCGCTCTGATAGACACCCTAGG
TGCGATCGCCCTCGTCTCTACCGTGGACACACCGCAACCACCACCGCCAA
CACCGTCGAGGGAAGCGGCACACAGCAGCAGCGGCGGCAGCAGCGCCAAC
AGCTCTGGTGACAGTTCTGTTGCTGCCGCAGATAACGATTGCGCGGTCGA
GAACAGCGCGTCTTCGGACGCGTTCGGTCTTGCCGTCCACGAGCTGGCCG
CGATGTGCTCGGAGGGTGCTTCTGCTGGGGGCTGGGCGCAGCTTGGTCTC
CCGCTCAGGTTCGCACACCACTTTTTCTTTTGCAAGAAGATTCCCAACAA
TTGGAGTTTTTGTGCAGAACGTGGTTGGATTTTCTCGGTTAAATCGGTTG
AATGGATGACTTGTTTTTCTTGGTCGGAACTGGCATGACCCAGCGCCAGA
AGCCTTGGCACGGTTTTTCTATCAAGTGTTAGAAGCACGATGACCACCTA
AGCTACTTGTCAGCGCTGACTACTAGTCTAGTGGTCATCGTTGCTTCTCA
ACAAAAGTTTATGCCCGAGTCCGTCAAGCTTTCTTTCAAGCTACTTGTCA
GCGCTGACTACTAGTCTAGTGGTCATCGTTGCTTCTCAACAAAAGTTTAT
GCCCGAGTCCGTCAAGCTTGCTTTCAAGCTACTTGTCAGCGCTGACTACT
AGTCTAGTAGTCATCGTTGCTTCTCAACAAAAGTTTATGCCCGAGTCCGT
CAATCTTTCTTTCAAGCCACGAACACGTCCCCCCAGGGTTGCCATCCCTC
TGATCAGCGCTGTCTTGCCCGGAGATCACATCGATAGGTACAAGAGGTTC
ATCGGCTTACTTTGCGATGTCTCGTAGATTTTTTATTCCCATATATCGGG
CGAAAATAACGTTCTCAATTGATAAAATGCTCAGGGGGAGACTCGAACCC
CGTACATTAGCAAACATGTTGGATAAAGCATGCACTCGGGGAAGTTGGGT
TAGGATTAGGGTTGGGGTTAGGGAATAGGATCTGCGTACCCCCTCCCTGT
TCTATTTCCTCCTTAACTCAATTTCTCGCGAAGTAGCCCCCCCAGCCCGT
TGCCTATGCCGTGTCCCCGAAAACCAGACCGAGGAAAGTTGACTGTCTGC
ACCTGGTATGGTTTTGCTTGGTTTGCTCGCGTGATTGTGACGTTTTGTTT
GACGCAAAAATGACTTCTTTTGTGTCCGGCTGTGCAGGCGACGGGCGTGT
TGGCACCTCCTGAGGTGCGTCTGGTCGACCACGTACCGCTTTAGGAAGCT
AGAAGACGAGGTGGATGCTGCTGATGCTCCTGCCCGAACACCACCGGAAG
ACATGGCTCGGCTGAGGTATTCCCTGGCGCTTAGGGCTGACAGGTTCGGA
CGGAAATCAGCTGGTAATCATTGGATATGTGTCGATTTTGTGTACTGATA
TCGCACGTTCACAGCAGTGCTATTTTTCGCGCGTTTACACGGTGACACCG
GGTTGCCCTGACTGGCACTTAGCGCCGCAATATTCCAAACTTGCGCTCGT
GGGATGCATGGTTACATGATGTCGGCAGGTGTCTTTTTTTCTTTTTTTCC
TGACGGGGGTCTTGGCCTCTTTTGCACGTTTCCACCAACTACTGTTTTTC
TGCATTTTTTGTAGTAGTAGTACCGTTGTTAGGGTATAATAGTTGGCTCT
TGACCACGGAAGGAGTCCGCGTCAGCAAGAGCCCGATTTTTCATCACGTC
GACGTTGCATTGCTGCAGCAATACCTCCGACGACCATGTTGATGATCAGA
ACAATCGCAATCGCTAGTGGGTGCTGATGGCGAAAACCTCCCACGGACTA
GATGTGTTGATGATCTGAACGATCTCCCACGATGATGTTGATTACGATAT
CGGTTTAATACAGTCCCACAGTTTATTTCGGTGTGATCACAACAATCTCC
CAACGATCGTGTCGTCGCCGTTGCCCACGAATCCTGTCGTTGCCGTTCAA
GGTGCACTTGCGTGCTAGCCACCGTGGGAAAAGTGAGGCTACCCCCCGCC
CTCCTGACGCCGCGGTTCAAGAAGCTCGTGGCCACCAAGCAGGGGCAGGA
GAACCTCCCGCTCCTCGACACCCAAGCAAGAGCTACGGCGACGGCATCGC
CGGCTCTGACGGGTGCCGGTGGCGTCGAGGGGGACGGCGAGCAAGCAGGC
CCCGAGGATGCCGTGTGGGCTAGCATGGCCGAAGAAGGAGAGGAAAACGC
GGCCGTGGACACCAGCAGCAGCAGCGGCGTCGATGCGACGTCGAGGAGCG
AAGCCGTCGAAGGTGGGGATAAGGTGGAGGGGGGTTCCGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1413:27364..30853- >mRNA_E-siliculosus-1a_F_contig1413.2447.1 ID=mRNA_E-siliculosus-1a_F_contig1413.2447.1|Name=mRNA_E-siliculosus-1a_F_contig1413.2447.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1776bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1413:27364..30853- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCACGGGGGTTTCCGCTGCTGTTGCGCGAGGCGTTGGTGCTTGTGACGCG
CGCGGTGCGCTCCGAGCTGGTTCCGCTGGTGCACAAGGGCTCCGAAGACG
CTCGGGCACGGGGGTTTCCGCTGCTGTTGCGCGAGGCGTTGGTGCTTGTG
ACGCGCGCGGTGCGCTCCGAGCTGGTTCCGCTGGTGCACAAGGGCTCCGA
AGACGCTCGGGACGCGGCCCGCGCTCTGATAGACACCCTAGGTGCGATCG
CCCTCGTCTCTACCGTGGACACACCGCAACCACCACCGCCAACACCGTCG
AGGGAAGCGGCACACAGCAGCAGCGGCGGCAGCAGCGCCAACAGCTCTGG
TGACAGTTCTGTTGCTGCCGCAGATAACGATTGCGCGGTCGAGAACAGCG
CGTCTTCGGACGCGTTCGGTCTTGCCGTCCACGAGCTGGCCGCGATGTGC
TCGGAGGGTGCTTCTGCTGGGGGCTGGGCGCAGCTTGGTCTCCCGCTCAG
GACGCGGCCCGCGCTCTGATAGACACCCTAGGTGCGATCGCCCTCGTCTC
TACCGTGGACACACCGCAACCACCACCGCCAACACCGTCGAGGGAAGCGG
CACACAGCAGCAGCGGCGGCAGCAGCGCCAACAGCTCTGGTGACAGTTCT
GTTGCTGCCGCAGATAACGATTGCGCGGTCGAGAACAGCGCGTCTTCGGA
CGCGTTCGGTCTTGCCGTCCACGAGCTGGCCGCGATGTGCTCGGAGGGTG
CTTCTGCTGGGGGCTGGGCGCAGCTTGGTCTCCCGCTCAGGCGACGGGCG
TGTTGGCACCTCCTGAGGTGCGTCTGGTCGACCACGTACCGCTTTAGGAA
GCTAGAAGACGAGGTGGATGCTGCTGATGCTCCTGCCCGAACACCACCGG
AAGACATGGCTCGGCTGAGGTATTCCCTGGCGCTTAGGGCTGACAGGCGA
CGGGCGTGTTGGCACCTCCTGAGGTGCGTCTGGTCGACCACGTACCGCTT
TAGGAAGCTAGAAGACGAGGTGGATGCTGCTGATGCTCCTGCCCGAACAC
CACCGGAAGACATGGCTCGGCTGAGGTATTCCCTGGCGCTTAGGGCTGAC
AGGTGCACTTGCGTGCTAGCCACCGTGGGAAAAGTGAGGCTACCCCCCGC
CCTCCTGACGCCGCGGTTCAAGAAGCTCGTGGCCACCAAGCAGGGGCAGG
AGAACCTCCCGCTCCTCGACACCCAAGCAAGAGCTACGGCGACGGCATCG
CCGGCTCTGACGGGTGCCGGTGGCGTCGAGGGGGACGGCGAGCAAGCAGG
CCCCGAGGATGCCGTGTGGGCTAGCATGGCCGAAGAAGGAGAGGAAAACG
CGGCCGTGGACACCAGCAGCAGCAGCGGCGTCGATGCGACGTCGAGGAGC
GAAGCCGTCGAAGGTGGGGATAAGGTGGAGGGGGGTTCCGTGCACTTGCG
TGCTAGCCACCGTGGGAAAAGTGAGGCTACCCCCCGCCCTCCTGACGCCG
CGGTTCAAGAAGCTCGTGGCCACCAAGCAGGGGCAGGAGAACCTCCCGCT
CCTCGACACCCAAGCAAGAGCTACGGCGACGGCATCGCCGGCTCTGACGG
GTGCCGGTGGCGTCGAGGGGGACGGCGAGCAAGCAGGCCCCGAGGATGCC
GTGTGGGCTAGCATGGCCGAAGAAGGAGAGGAAAACGCGGCCGTGGACAC
CAGCAGCAGCAGCGGCGTCGATGCGACGTCGAGGAGCGAAGCCGTCGAAG
GTGGGGATAAGGTGGAGGGGGGTTCC back to top
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