mRNA_E-siliculosus-1a_F_contig1406.2404.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1406.2404.1
Unique NamemRNA_E-siliculosus-1a_F_contig1406.2404.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.400e-35
Identity = 139/198 (70.20%), Postives = 142/198 (71.72%), Query Frame = 1 
Query:  145 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKAAAEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERELTAGATSTPPARGSADAXXXXXXXXXXXXXNGAAAEGGSA 738
            PRDDSIKP+VVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEAR+RVGGRCYTKRWISSGVKPPER XXXXX                    AAAEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 E+EL A ATSTPPA  SADA              GAAAEGGSA
Sbjct:  513 PRDDSIKPIVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARRRVGGRCYTKRWISSGVKPPERPXXXXXSTKGPRVARREAA-------AAAEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGAAEKVPEKG-----EQELAASATSTPPAPDSADAAIAAAPDSGK---RGAAAEGGSA 695
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.040e-15
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  226 AGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVKPPER 357
            +GLG ALELQKLGIEVIV EARQRVGGRCYTKRWISSGVKPPER
Sbjct:  454 SGLGGALELQKLGIEVIVGEARQRVGGRCYTKRWISSGVKPPER 497
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: UPI0003602C02 (flavin monoamine oxidase family protein n=1 Tax=Longispora albida TaxID=203523 RepID=UPI0003602C02)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-9
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  145 PRDDSIKPVVVSSLGR----PHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGV 342
            P  DSI  VV + LGR    P RV+V+GAG AGL AA ELQ+ G E +V+EA+ RVGGR YT R  + G+
Sbjct:   29 PVPDSILDVVTAGLGRREQHPKRVIVIGAGMAGLVAAFELQRQGHEPVVLEAQNRVGGRVYTMRDFAPGL 98
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A7X4BVU0_9BACT (FAD-dependent oxidoreductase n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4BVU0_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 2.720e-8
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  145 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKR 324
            P +    P  +++ GRP R+VVVGAG AGL AA EL + G EV V+EAR+RVGGR  T R
Sbjct:   32 PVEPEDSPGALAATGRPMRIVVVGAGMAGLAAAYELSRAGHEVTVLEARERVGGRVLTLR 91
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A7S2SPD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPD9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.980e-8
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  190 RPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTK 321
            R  RVVV+GAG AGL AA EL+KLG EVIV+EAR R+GGRC+++
Sbjct:  131 RLFRVVVIGAGMAGLAAARELEKLGFEVIVLEARHRIGGRCHSE 174
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: UPI0016899B31 (FAD-dependent oxidoreductase n=2 Tax=Phormidium sp. FACHB-1136 TaxID=2692848 RepID=UPI0016899B31)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-8
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  181 SLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYT 318
            ++  P RV+VVGAG AGL AA ELQ+LG EV+VVEAR R+GGR +T
Sbjct:   31 TVSNPKRVIVVGAGLAGLAAAQELQRLGHEVVVVEARDRIGGRVWT 76
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A838MFQ8_9HYPH (FAD-dependent oxidoreductase n=3 Tax=Rhizobiaceae TaxID=82115 RepID=A0A838MFQ8_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 7.670e-8
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  157 SIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVK 345
            ++KP   ++ G+P +V+VVGAG AGL AA  L + GIEVIVVEAR R+GGR  T R +   V+
Sbjct:   71 ALKPAFAAAAGKP-KVIVVGAGIAGLSAARTLMRHGIEVIVVEARDRIGGRISTDRSLGVAVE 132
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A6G1SFH7_9ACAR (Lysine-specific histone demethylase 1A n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SFH7_9ACAR)

HSP 1 Score: 63.2 bits (152), Expect = 9.210e-8
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  163 KPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKR 324
            KP + S   R  RV+V+GAG +GL AA +LQK G+EVIV+EAR RVGGR +T R
Sbjct:  259 KPPLKSGGKRAGRVIVIGAGLSGLAAARQLQKFGMEVIVLEARNRVGGRVHTYR 312
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A2S9F344_9MYCO (Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp. ITM-2017-0098 TaxID=2099692 RepID=A0A2S9F344_9MYCO)

HSP 1 Score: 57.4 bits (137), Expect = 9.490e-8
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  202 VVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYT 318
            VVVVGAGFAGL AA EL +LG +V+V+E R RVGGR YT
Sbjct:    4 VVVVGAGFAGLSAARELSRLGRDVVVLEGRDRVGGRSYT 42
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Match: A0A3M2BNE9_9BACT (FAD-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2BNE9_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.320e-7
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  190 RPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGV 342
            R  RVVV+GAG AGLGAA ELQ+ G  V+V+EAR R+GGR +T R + + V
Sbjct:   25 RAERVVVIGAGAAGLGAAAELQRAGYSVLVIEARDRLGGRIFTDRSLGAPV 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1406.2404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE3.400e-3570.20PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI2.040e-1593.18PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
UPI0003602C021.180e-954.29flavin monoamine oxidase family protein n=1 Tax=Lo... [more]
A0A7X4BVU0_9BACT2.720e-855.00FAD-dependent oxidoreductase n=3 Tax=Gemmatimonade... [more]
A0A7S2SPD9_9STRA4.980e-868.18Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI0016899B315.430e-865.22FAD-dependent oxidoreductase n=2 Tax=Phormidium sp... [more]
A0A838MFQ8_9HYPH7.670e-852.38FAD-dependent oxidoreductase n=3 Tax=Rhizobiaceae ... [more]
A0A6G1SFH7_9ACAR9.210e-859.26Lysine-specific histone demethylase 1A n=1 Tax=Ace... [more]
A0A2S9F344_9MYCO9.490e-871.79Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp.... [more]
A0A3M2BNE9_9BACT1.320e-758.82FAD-binding protein n=1 Tax=Acidobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1406contigE-siliculosus-1a_F_contig1406:2574..3952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size738
Model size738
Exons2
Ec32 orthologEc-00_000880.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGsCOG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759
EggNOG free text desc.SET domain
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
KEGG Pathwayko04714,map04714
KEGG koko:K11450
Seed eggNOG ortholog2880.D8LQQ1
Seed ortholog evalue1.7e-14
Seed ortholog score86.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927921.220519-CDS-E-siliculosus-1a_F_contig1406:2573..30261622927921.220519-CDS-E-siliculosus-1a_F_contig1406:2573..3026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 2574..3026 -
1696318737.722566-CDS-E-siliculosus-1a_F_contig1406:2573..30261696318737.722566-CDS-E-siliculosus-1a_F_contig1406:2573..3026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 2574..3026 -
1622927921.2348347-CDS-E-siliculosus-1a_F_contig1406:3667..39521622927921.2348347-CDS-E-siliculosus-1a_F_contig1406:3667..3952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 3668..3952 -
1696318737.7366476-CDS-E-siliculosus-1a_F_contig1406:3667..39521696318737.7366476-CDS-E-siliculosus-1a_F_contig1406:3667..3952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 3668..3952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1406.2404.1prot_E-siliculosus-1a_F_contig1406.2404.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1406 2574..3952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1406.2404.1

>prot_E-siliculosus-1a_F_contig1406.2404.1 ID=prot_E-siliculosus-1a_F_contig1406.2404.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=246bp
QRQQQPQQSSRKKKRRQEDTSTADAAKKKRKVQGGGGGDSTATARKKKPR
DDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRV
GGRCYTKRWISSGVKPPERPPPPPPSTKGPRVARREAAAAAAAEKAAAEK
AATAEKAAGEKAAAEKAAAGETAAEGKEAAGEKAAAEKDGAGEKAAENEP
ETGERELTAGATSTPPARGSADAAAAAAAAAPDSEKNGAAAEGGSA
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mRNA from alignment at E-siliculosus-1a_F_contig1406:2574..3952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1406.2404.1 ID=mRNA_E-siliculosus-1a_F_contig1406.2404.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1379bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1406:2574..3952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCGGCAGCAGCAGCCTCAACAGTCCTCCAGAAAGAAGAAGAGAAGACA
GGAAGACACTAGCACTGCGGATGCAGCTAAGAAGAAGCGGAAGGTGCAGG
GCGGCGGCGGCGGCGACTCCACGGCCACTGCACGAAAAAAGAAACCGCGA
GATGACTCCATCAAGCCTGTCGTAGTGAGCTCGTTGGGACGGCCGCACCG
GGTCGTTGTTGTCGGGGCCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGC
TCCAGAAACTGGGCATAGAAGTTATCGTGGTGGAGGTGAGCCGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTGTGGGGGGGGGGGGGGG
GGGTTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTGCAGAGTATTTTTT
TTTTTGGGGGGGGGGACATGGGTTTCGTTAGATGTGCACGTCGAGGTAGG
AGACGGTTACCCTTTGGATTTGTGGTCTGACGAGTGTCCACGTGGTGGTT
TCGAAGATGTGTGTACGGGAGACCTCGTCCCACCTTGAAGCACGGTTCTT
CTCATGTGTGACGGCGATTAACTCGTGCCCTATTCGATGCCGTCCCTGCT
TCGAGAGAAGCAACCCTTTTATTTTGCAGCCTTTCTTCTCGCAAGCGTGT
GAATGCACGCGTGACACTCTTTTCGTCGCCCTGTACACGGGAGTTACACG
CACCAAAGTGATCTGCCATTGTATGTTTTGACGTTTTGGCGCCAATATAC
TGCTGTCCGCTACTCGTAGCCAGCACCAGCAGAGAAAACACTAAGTGCAC
CTCGCAAACACAGAGACACTAGCCTCCACTCGCACCGTCGGCCGACCCGT
GGCCACGTGGTGGACTCTGAAAACAGGCGAGGCAGAGGGTCGGTGGCCGC
TGCTACACGAAGCGCTGGATCTCGAGCGGGGTCAAGCCCCCGGAACGCCC
GCCGCCGCCCCCGCCGTCGACGAAGGGCCCGCGGGTTGCTCGGAGGGAGG
CGGCAGCGGCGGCGGCGGCGGAAAAGGCGGCGGCGGAAAAAGCAGCTACG
GCGGAAAAGGCGGCGGGGGAAAAGGCGGCGGCGGAAAAAGCGGCGGCGGG
GGAAACGGCGGCGGAGGGAAAAGAAGCGGCGGGGGAAAAGGCGGCGGCGG
AAAAAGACGGGGCGGGGGAAAAGGCGGCGGAGAATGAGCCAGAAACGGGG
GAACGAGAGCTGACCGCTGGCGCTACCAGCACTCCACCAGCACGTGGCTC
TGCTGACGCCGCCGCCGCCGCCGCCGCCGCCGCTCCAGACTCCGAGAAGA
ACGGCGCAGCAGCCGAAGGGGGCTCCGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1406:2574..3952-

>mRNA_E-siliculosus-1a_F_contig1406.2404.1 ID=mRNA_E-siliculosus-1a_F_contig1406.2404.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1476bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1406:2574..3952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCGGCAGCAGCAGCCTCAACAGTCCTCCAGAAAGAAGAAGAGAAGACA
GGAAGACACTAGCACTGCGGATGCAGCTAAGAAGAAGCGGAAGGTGCAGG
GCGGCGGCGGCGGCGACTCCACGGCCACTGCACGAAAAAAGAAACCGCGA
GATGACTCCATCAAGCCTGTCGTAGTGAGCTCGTTGGGACGGCCGCACCG
GGTCGTTGTTGTCGGGGCCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGC
TCCAGAAACTGGGCATAGAAGTTATCGTGGTGGAGCAGCGGCAGCAGCAG
CCTCAACAGTCCTCCAGAAAGAAGAAGAGAAGACAGGAAGACACTAGCAC
TGCGGATGCAGCTAAGAAGAAGCGGAAGGTGCAGGGCGGCGGCGGCGGCG
ACTCCACGGCCACTGCACGAAAAAAGAAACCGCGAGATGACTCCATCAAG
CCTGTCGTAGTGAGCTCGTTGGGACGGCCGCACCGGGTCGTTGTTGTCGG
GGCCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGCTCCAGAAACTGGGCA
TAGAAGTTATCGTGGTGGAGGCGAGGCAGAGGGTCGGTGGCCGCTGCTAC
ACGAAGCGCTGGATCTCGAGCGGGGTCAAGCCCCCGGAACGCCCGCCGCC
GCCCCCGCCGTCGACGAAGGGCCCGCGGGTTGCTCGGAGGGAGGCGGCAG
CGGCGGCGGCGGCGGAAAAGGCGGCGGCGGAAAAAGCAGCTACGGCGGAA
AAGGCGGCGGGGGAAAAGGCGGCGGCGGAAAAAGCGGCGGCGGGGGAAAC
GGCGGCGGAGGGAAAAGAAGCGGCGGGGGAAAAGGCGGCGGCGGAAAAAG
ACGGGGCGGGGGAAAAGGCGGCGGAGAATGAGCCAGAAACGGGGGAACGA
GAGCTGACCGCTGGCGCTACCAGCACTCCACCAGCACGTGGCTCTGCTGA
CGCCGCCGCCGCCGCCGCCGCCGCCGCTCCAGACTCCGAGAAGAACGGCG
CAGCAGCCGAAGGGGGCTCCGCCGCGAGGCAGAGGGTCGGTGGCCGCTGC
TACACGAAGCGCTGGATCTCGAGCGGGGTCAAGCCCCCGGAACGCCCGCC
GCCGCCCCCGCCGTCGACGAAGGGCCCGCGGGTTGCTCGGAGGGAGGCGG
CAGCGGCGGCGGCGGCGGAAAAGGCGGCGGCGGAAAAAGCAGCTACGGCG
GAAAAGGCGGCGGGGGAAAAGGCGGCGGCGGAAAAAGCGGCGGCGGGGGA
AACGGCGGCGGAGGGAAAAGAAGCGGCGGGGGAAAAGGCGGCGGCGGAAA
AAGACGGGGCGGGGGAAAAGGCGGCGGAGAATGAGCCAGAAACGGGGGAA
CGAGAGCTGACCGCTGGCGCTACCAGCACTCCACCAGCACGTGGCTCTGC
TGACGCCGCCGCCGCCGCCGCCGCCGCCGCTCCAGACTCCGAGAAGAACG
GCGCAGCAGCCGAAGGGGGCTCCGCC
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