mRNA_E-siliculosus-1a_F_contig14040.2399.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14040.2399.1
Unique NamemRNA_E-siliculosus-1a_F_contig14040.2399.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14040.2399.1 vs. uniprot
Match: A0A6H5KJT7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJT7_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 5.910e-61
Identity = 104/107 (97.20%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 ALWDTSVRYNLDEDPRKMEQHASKDAMNSKYSAAALGGEDAKVVALSSGRHMFFFAVGEGSGKQVESVGAAHGSSGTSILSMLASKDGKLLATTAAGDSRARLWRFP 321
            ALWDTSVRYNLDEDPRK+EQHASKDAMNSKYSAAALGGEDAKVVALSSGRH+FFF+VGEGSGKQVESVGAAHGSSGTSILSMLASKDGKLLATTAAGDSRARLWRFP
Sbjct:  317 ALWDTSVRYNLDEDPRKLEQHASKDAMNSKYSAAALGGEDAKVVALSSGRHIFFFSVGEGSGKQVESVGAAHGSSGTSILSMLASKDGKLLATTAAGDSRARLWRFP 423
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BLAST of mRNA_E-siliculosus-1a_F_contig14040.2399.1 vs. uniprot
Match: A0A835Z556_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z556_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.420e-7
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    4 LWDTSVRYNLDEDPRKMEQHASKDAMNSKYSAAALGGEDAKVVALSSGRHMFFFAVGEGSGKQVESVGAAHGSSGTSILSMLASKDGKLLATTAAGDSRARLWRFP 321
            +WD +VRYNLDEDPR    +   DA     +  A G    KVVA+S+G+ + +F+   G+  QV  V  A G+   SI+ + + +D   +A  A+G+  A LW+FP
Sbjct:  388 VWDITVRYNLDEDPRCQGTYPL-DATKGVPTGIAFG-PGGKVVAISAGKRLLYFSAETGA--QVGEVADACGTG--SIVGLKSPRDAHCVAVVASGNKHAFLWKFP 487
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14040.2399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJT7_9PHAE5.910e-6197.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z556_9STRA2.420e-737.74WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14040contigE-siliculosus-1a_F_contig14040:179..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size321
Model size321
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03000,ko03009,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EC2.7.7.50
EggNOG OGsCOG2319@1,KOG2096@2759
EggNOG free text desc.cellular response to glucose starvation
GOsGO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0009267,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0016020,GO:0016021,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030176,GO:0030968,GO:0031224,GO:0031227,GO:0031369,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036293,GO:0036294,GO:0042149,GO:0042175,GO:0042221,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051219,GO:0051716,GO:0065007,GO:0070482,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071496,GO:0098827
KEGG Pathwayko03008,ko03015,ko04931,ko04932,map03008,map03015,map04931,map04932
KEGG ReactionR03828,R10814
KEGG koko:K09113,ko:K13917,ko:K14570
KEGG rclassRC00002
Preferred nameTBL2
Seed eggNOG ortholog2880.D7G2G6
Seed ortholog evalue8.4e-51
Seed ortholog score206.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.4292645-CDS-E-siliculosus-1a_F_contig14040:178..4991622927920.4292645-CDS-E-siliculosus-1a_F_contig14040:178..499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14040 179..499 +
1696318737.3187742-CDS-E-siliculosus-1a_F_contig14040:178..4991696318737.3187742-CDS-E-siliculosus-1a_F_contig14040:178..499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14040 179..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14040.2399.1prot_E-siliculosus-1a_F_contig14040.2399.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14040 179..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14040.2399.1

>prot_E-siliculosus-1a_F_contig14040.2399.1 ID=prot_E-siliculosus-1a_F_contig14040.2399.1|Name=mRNA_E-siliculosus-1a_F_contig14040.2399.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=107bp
ALWDTSVRYNLDEDPRKMEQHASKDAMNSKYSAAALGGEDAKVVALSSGR
HMFFFAVGEGSGKQVESVGAAHGSSGTSILSMLASKDGKLLATTAAGDSR
ARLWRFP
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mRNA from alignment at E-siliculosus-1a_F_contig14040:179..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14040.2399.1 ID=mRNA_E-siliculosus-1a_F_contig14040.2399.1|Name=mRNA_E-siliculosus-1a_F_contig14040.2399.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=321bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14040:179..499+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCTCTGGGACACCTCTGTCCGGTACAACCTGGACGAGGACCCTCGCAA
GATGGAGCAGCACGCCTCCAAGGACGCCATGAACTCCAAGTACTCGGCCG
CCGCCCTCGGCGGCGAGGACGCCAAGGTGGTGGCCCTCTCCTCCGGGAGG
CACATGTTCTTCTTCGCGGTCGGGGAAGGCAGCGGCAAGCAGGTCGAGAG
CGTCGGGGCGGCGCACGGCTCGTCGGGCACTTCCATCCTGTCGATGCTGG
CCTCCAAGGACGGGAAGCTGCTCGCGACGACAGCGGCGGGGGACTCGCGC
GCGCGGCTGTGGAGGTTCCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14040:179..499+

>mRNA_E-siliculosus-1a_F_contig14040.2399.1 ID=mRNA_E-siliculosus-1a_F_contig14040.2399.1|Name=mRNA_E-siliculosus-1a_F_contig14040.2399.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14040:179..499+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGCTCTGGGACACCTCTGTCCGGTACAACCTGGACGAGGACCCTCGCAA
GATGGAGCAGCACGCCTCCAAGGACGCCATGAACTCCAAGTACTCGGCCG
CCGCCCTCGGCGGCGAGGACGCCAAGGTGGTGGCCCTCTCCTCCGGGAGG
CACATGTTCTTCTTCGCGGTCGGGGAAGGCAGCGGCAAGCAGGTCGAGAG
CGTCGGGGCGGCGCACGGCTCGTCGGGCACTTCCATCCTGTCGATGCTGG
CCTCCAAGGACGGGAAGCTGCTCGCGACGACAGCGGCGGGGGACTCGCGC
GCGCGGCTGTGGAGGTTCCCGGCGCTCTGGGACACCTCTGTCCGGTACAA
CCTGGACGAGGACCCTCGCAAGATGGAGCAGCACGCCTCCAAGGACGCCA
TGAACTCCAAGTACTCGGCCGCCGCCCTCGGCGGCGAGGACGCCAAGGTG
GTGGCCCTCTCCTCCGGGAGGCACATGTTCTTCTTCGCGGTCGGGGAAGG
CAGCGGCAAGCAGGTCGAGAGCGTCGGGGCGGCGCACGGCTCGTCGGGCA
CTTCCATCCTGTCGATGCTGGCCTCCAAGGACGGGAAGCTGCTCGCGACG
ACAGCGGCGGGGGACTCGCGCGCGCGGCTGTGGAGGTTCCCG
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