mRNA_E-siliculosus-1a_F_contig1404.2398.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1404.2398.1
Unique NamemRNA_E-siliculosus-1a_F_contig1404.2398.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1404.2398.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 8.630e-110
Identity = 179/190 (94.21%), Postives = 180/190 (94.74%), Query Frame = 1 
Query:    1 TEWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPAGVRGRLDPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGSSSLSQWEASVSWETASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTKELIARMTTAPPRGDGESGDSTDGDDRA 570
            TEWRAGFLRERSHLCRGTRECAVR LLASARGEHGIPAWGP G     DPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGSSSLSQWEASVSWET SLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPST+ELIARMTTAP RGDGESGD TDGDDRA
Sbjct:  332 TEWRAGFLRERSHLCRGTRECAVRTLLASARGEHGIPAWGPEG-----DPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGSSSLSQWEASVSWETTSLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPRRGDGESGDGTDGDDRA 516
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BLAST of mRNA_E-siliculosus-1a_F_contig1404.2398.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 3.220e-103
Identity = 175/189 (92.59%), Postives = 176/189 (93.12%), Query Frame = 1 
Query:    4 EWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPAGVRGRLDPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGSSSLSQWEASVSWETASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTKELIARMTTAPPRGDGESGDSTDGDDRA 570
            EWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGP G     DPLDGVRLSAVWRGLGGDRPLPH PLELL D LSPPGG SSLSQWEASVSWETASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPST+ELIARMTTAPPRGDGESG  T GDDRA
Sbjct:  332 EWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPEG-----DPLDGVRLSAVWRGLGGDRPLPHTPLELLRDNLSPPGGGSSLSQWEASVSWETASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDGESGGGTHGDDRA 515
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1404.2398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI8.630e-11094.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE3.220e-10392.59Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1404contigE-siliculosus-1a_F_contig1404:29777..32748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size570
Model size571
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1404.2398.1prot_E-siliculosus-1a_F_contig1404.2398.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1404 29777..32747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.3549533-CDS-E-siliculosus-1a_F_contig1404:29776..299201622927920.3549533-CDS-E-siliculosus-1a_F_contig1404:29776..29920Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 29777..29920 +
1696318737.261108-CDS-E-siliculosus-1a_F_contig1404:29776..299201696318737.261108-CDS-E-siliculosus-1a_F_contig1404:29776..29920Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 29777..29920 +
1622927920.368459-CDS-E-siliculosus-1a_F_contig1404:30614..307701622927920.368459-CDS-E-siliculosus-1a_F_contig1404:30614..30770Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 30615..30770 +
1696318737.2714329-CDS-E-siliculosus-1a_F_contig1404:30614..307701696318737.2714329-CDS-E-siliculosus-1a_F_contig1404:30614..30770Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 30615..30770 +
1622927920.3822656-CDS-E-siliculosus-1a_F_contig1404:31643..317661622927920.3822656-CDS-E-siliculosus-1a_F_contig1404:31643..31766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 31644..31766 +
1696318737.280818-CDS-E-siliculosus-1a_F_contig1404:31643..317661696318737.280818-CDS-E-siliculosus-1a_F_contig1404:31643..31766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 31644..31766 +
1622927920.3939602-CDS-E-siliculosus-1a_F_contig1404:32600..327471622927920.3939602-CDS-E-siliculosus-1a_F_contig1404:32600..32747Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 32601..32747 +
1696318737.298558-CDS-E-siliculosus-1a_F_contig1404:32600..327471696318737.298558-CDS-E-siliculosus-1a_F_contig1404:32600..32747Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 32601..32747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1404.2398.1

>prot_E-siliculosus-1a_F_contig1404.2398.1 ID=prot_E-siliculosus-1a_F_contig1404.2398.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2398.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp
TEWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPAGVRGRLDP
LDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGSSSLSQWEASVSWE
TASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARER
ARHIGAVLGPSTKELIARMTTAPPRGDGESGDSTDGDDRA
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mRNA from alignment at E-siliculosus-1a_F_contig1404:29777..32748+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1404.2398.1 ID=mRNA_E-siliculosus-1a_F_contig1404.2398.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2398.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1404:29777..32748+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCGAGTGGAGGGCGGGCTTCTTGCGGGAACGGTCGCACCTGTGCCGGGG
GACGAGAGAGTGCGCCGTCCGGGCGTTGTTGGCCTCGGCGCGGGGGGAGC
ACGGCATCCCCGCCTGGGGGCCAGCGGGGGTGAGGGGGCGGCTTGTTGCC
CATGCCAGCTGCTATTGTCCGGCAAAATAACGCCCGCTAGGAACACGTGT
ATGCAACCCAAGTTGTTTGGCAATCAGTCTTGGTGTTGGCGCCGACGGGG
AATGATTTGGCACCAGGTCTTGGAGGGCGCCTCCTCACCGTGCGAAATTT
GTATGTGATTGTACTCATTTGCCGCGTTTTTTGTTGTCTCGTGGGGAATT
TATTATTTCCAAGCGTGTTCTCCCTGTCTCATTTCTACGTGTAGAGGACA
AAGTTTCGCCGACTCAATTTGCATGTCTTCGCCCCCACCCGTCCCCGCCT
GGTTTGCCATGACACGGGCCTCTCGCGCCTCGTTGAACAACCAAGGGCGT
GAGGTCGTTTTGGCCGCCAAGCTCCTGCAAGATAAGACTTTTGAGACCCC
CTCCTCTGAGTTTCTCTCCCGCCCATCTCGCTGTCCCTCTGTCTGTCTGT
CTGTCTGTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCT
CTGTGTCTCTGTCTCTGTCTGCCTCTCTCTCTCTGTCTCTCTCTGTCTCT
CTCTCTGTGTCTCTGTCTCTGTCTCTGTCTGTCTGTCTCTGCCTCTGTCT
CTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACTCTGGTTCTCT
CCCTCCCTTCCTGCACCCTCTTGTTGTGTGCAACGCAGGACCCGCTAGAC
GGAGTTCGGCTGTCGGCGGTGTGGCGGGGGCTCGGCGGAGATCGACCCCT
CCCGCACGCCCCCCTGGAGCTCCTCTGTGACTATTTGTCCCCCCCCGGTG
GGAGCAGCTCGTTGTCGCAGTGGGAAGCCTCTGTGTCCTGGGAGGTGGGT
CGGAAGCACGCTGCTGCTTGCCGTGTTGTAGAAGCGTCCATGACCCGCGT
TGCTTTCTTCGCACGGTTTTGTTCTTGAACAAATGTGTTTTCACCCTGAA
CAGATACAGATACACGCTTCGGTCGTAGTCCGCTTCGCGTGCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCGCGCA
CGCCTCCCGCGGGTTGCGCGTTGTCTTGTGTNNNNNNNNNNCGGTTTTTT
TTTTGAACAAATGTGTTTTCCCCCCGAACAGAAACAAAAACCCCCTTCGG
TCGTAGTCCCCTTCCCGTGCCCCCCCCCCCCCCCCCTTCCCCTGGGAACC
TGTCGTGTTCGATCGGGCGAACTGCACGCGTTATTTTGGCTCGATGTGTT
ACGGGCTTTACCGTTTCTTACGTAAATTGCTGACCCCCCGCCCCTTCCAT
CTTCAACAGAAGGGAACCTTCATGTATGTATGACAGTTAGAAAATGTGGC
GGCAGAATCTGTGCTCCGAACGGTATGTTGCGTCTCGCAGGGGGTCGTGA
TCACTGGTCGCGAATGTTGGACCTAACAACAAATGTACCCCCCCCCCTCG
CATCTCCAATGCGCCAACATCACGGTGTATGTAGCGTCTACGAACCCCTC
TTATGTCCAAGTATCACGTACTACCCCCACCCTCCCCCGTGAAGCGTCAC
TGCCGACAGTCTCCTACTGCAGGCTAGCCAAATCCCCCGGCGCTCTCCCC
CATGCTCTGATCTTTGTGTTGCAAGAAGAAGCCACATCTCACACCACAAG
CGGACAACAACACTCCAACCCGCAACACCCGTGTCCGCCGCCGCCACCGT
TCCTCTTGCTGCTGTAGACGGCAAGCCTCTCCGCCGGGTCCCTAGGCTTG
AAGCTCCGGCTTCTCCTTGCCGTGTACGTGCACTGCCTGGCGCTAGGTGG
TGACCTCCTCATGGCGGACATCTGCAGCGCCGACGCCGAGGTTGGTCCGT
TCTTGCATGACATGCCGCAGTGTTTCGGGAGTGGGGGGGCGGGGGGGGCA
GTTGGCATGATGTATTTGGTGCCCTCCTGCTAGAGCATTGGAGGTGTAGA
TGGCCGGGAAGACTTGACCTGTGTCACTGACTACCCGCCCCCCGAAGCCG
GGGGGTACGTGTGTCGGTTGTCTTGATATCCTCCTGCTGAGAGTATTGGA
GGTCTAGATGGCGCTGTATCCGGGAAGACTTGAGCTATGTCTCCGACGGC
CCCGCCCCCCCCGGAGGGCATAATGGGTCGGTCATCTTGATGTCCTCCTG
CTGAGAGCATTGAAGGTTTAGATGGCGCGCTGGCCAGAAAGAGCTGTGCA
GCAGGGAACAAGAATATTGTGGGGAACCAACCTCCGTTGTGATTCGTTCC
GACTGTTATGAATTCAGCAATGTGTTATTGTGGGCTTCTGTCTGCCATTC
TGCGAAAGGTGTTGGCAGGGAAGGCTGCCTTGCTTTCTCGGTGGCGAATC
TCGCGAAACTCTTGTGATGCGCCTAACCCTAAGTTGGTTTGCTGGCTTCG
CCACATCGTTAACGCTGCGCGATATCATTTTTCTGCTGAAATATGTGAAG
CGAGCCTCGTGTTTGTTGGAAACATCAACAACTTCAGCAGCAGCAGCAGC
AGCAGCAGCAGCTGTAGCAGCACGCTCGCCGCAGGGTAGATATTATTGGA
CTCTGTGATTGTTGAAAACAACATCAATAACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTAGCGTTAGCGTCAGCAATAGCAACGACAATGGCGGC
CATCCCGACAATCAATCCATCCAGGCCGAACTGTCGTCAGCGAGGGAGAG
GGCGAGACACATCGGTGCCGTTCTCGGACCGAGCACGAAGGAGCTTATCG
CAAGGATGACCACGGCGCCTCCGAGAGGCGACGGAGAGAGCGGCGACAGT
ACGGACGGCGACGACCGGGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1404:29777..32748+

>mRNA_E-siliculosus-1a_F_contig1404.2398.1 ID=mRNA_E-siliculosus-1a_F_contig1404.2398.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2398.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1404:29777..32748+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCGAGTGGAGGGCGGGCTTCTTGCGGGAACGGTCGCACCTGTGCCGGGG
GACGAGAGAGTGCGCCGTCCGGGCGTTGTTGGCCTCGGCGCGGGGGGAGC
ACGGCATCCCCGCCTGGGGGCCAGCGGGGGTGAGGGGGCGGCTTACCGAG
TGGAGGGCGGGCTTCTTGCGGGAACGGTCGCACCTGTGCCGGGGGACGAG
AGAGTGCGCCGTCCGGGCGTTGTTGGCCTCGGCGCGGGGGGAGCACGGCA
TCCCCGCCTGGGGGCCAGCGGGGGTGAGGGGGCGGCTTGACCCGCTAGAC
GGAGTTCGGCTGTCGGCGGTGTGGCGGGGGCTCGGCGGAGATCGACCCCT
CCCGCACGCCCCCCTGGAGCTCCTCTGTGACTATTTGTCCCCCCCCGGTG
GGAGCAGCTCGTTGTCGCAGTGGGAAGCCTCTGTGTCCTGGGAGGACCCG
CTAGACGGAGTTCGGCTGTCGGCGGTGTGGCGGGGGCTCGGCGGAGATCG
ACCCCTCCCGCACGCCCCCCTGGAGCTCCTCTGTGACTATTTGTCCCCCC
CCGGTGGGAGCAGCTCGTTGTCGCAGTGGGAAGCCTCTGTGTCCTGGGAG
ACGGCAAGCCTCTCCGCCGGGTCCCTAGGCTTGAAGCTCCGGCTTCTCCT
TGCCGTGTACGTGCACTGCCTGGCGCTAGGTGGTGACCTCCTCATGGCGG
ACATCTGCAGCGCCGACGCCGAGACGGCAAGCCTCTCCGCCGGGTCCCTA
GGCTTGAAGCTCCGGCTTCTCCTTGCCGTGTACGTGCACTGCCTGGCGCT
AGGTGGTGACCTCCTCATGGCGGACATCTGCAGCGCCGACGCCGAGGCCG
AACTGTCGTCAGCGAGGGAGAGGGCGAGACACATCGGTGCCGTTCTCGGA
CCGAGCACGAAGGAGCTTATCGCAAGGATGACCACGGCGCCTCCGAGAGG
CGACGGAGAGAGCGGCGACAGTACGGACGGCGACGACCGGGCAGCCGAAC
TGTCGTCAGCGAGGGAGAGGGCGAGACACATCGGTGCCGTTCTCGGACCG
AGCACGAAGGAGCTTATCGCAAGGATGACCACGGCGCCTCCGAGAGGCGA
CGGAGAGAGCGGCGACAGTACGGACGGCGACGACCGGGCA
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