mRNA_E-siliculosus-1a_F_contig1404.2397.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1404.2397.1
Unique NamemRNA_E-siliculosus-1a_F_contig1404.2397.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1404.2397.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 8.390e-121
Identity = 196/211 (92.89%), Postives = 203/211 (96.21%), Query Frame = 1 
Query:  418 KARMTAGGAATAGDEGDISEFPNLASFFGEEECSLDAWLTPEPSSSSATMSSREQEADERELLEDMEAWQLLHSWFGFGDILCLHEAATNPASPSRSGDGAGTGLSLEQLLSTGVMAMEDRRCGAVLAVQQQPGGDGDGRRGRGSRDSASRRGVSVKGYATLSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLADKALSAWGR 1050
            KARMTAGGAATAGDEGDIS FP+LASFFGEEECSLDAWL PEPSSS+ATMSSRE+EADERE LED+EAW LL SWFGFGD+LCLHEAAT PAS SRSGDGAGTGLSLEQLLSTGVMAMEDRRCGAVLA+QQQPGGDG+GRRGRGSRDSASRRGVSVKGYATLSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELL DKALSAWGR
Sbjct:   85 KARMTAGGAATAGDEGDISAFPDLASFFGEEECSLDAWLAPEPSSSAATMSSREEEADEREFLEDVEAWHLLRSWFGFGDLLCLHEAATKPASSSRSGDGAGTGLSLEQLLSTGVMAMEDRRCGAVLAMQQQPGGDGNGRRGRGSRDSASRRGVSVKGYATLSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLTDKALSAWGR 295
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BLAST of mRNA_E-siliculosus-1a_F_contig1404.2397.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 2.930e-113
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 1 
Query:  418 KARMTAGGAATAGDEGDISEFPNLASFFGEEECSLDAWLTPEPSSSSATMSSREQEADERELLEDMEAWQLLHSWFGFGDILCLHEAATNPASPSRSGDGAGTGLSLEQLLSTGVMAMEDRRCGAVLAVQQQPGGDGDGRRGRGSRDSASRRGVSVKGYATLSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLADKALSAWGR 1050
            +AR++AGGAATAGDEGDISEFP+LASFFGEEECSLDAWL PEPSSSSATMSSRE+EADERE LEDM AW LL SWFGFGD+LCLHEAATNPAS SRSGDGAGT LSLEQLLSTGVMAMEDRRCGAVLA+QQQPGGDGDGRRGR SRDSASRRGVSVKGYATLSP GHADWTRRAETV LESEASS +PRSRLSLEALGELL DKALSAWGR
Sbjct:   84 EARISAGGAATAGDEGDISEFPDLASFFGEEECSLDAWLAPEPSSSSATMSSREEEADEREFLEDMGAWHLLRSWFGFGDLLCLHEAATNPASSSRSGDGAGTVLSLEQLLSTGVMAMEDRRCGAVLAMQQQPGGDGDGRRGRCSRDSASRRGVSVKGYATLSPIGHADWTRRAETVCLESEASSAIPRSRLSLEALGELLTDKALSAWGR 294
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1404.2397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI8.390e-12192.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE2.930e-11390.52Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1404contigE-siliculosus-1a_F_contig1404:25536..28812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size624
Model size1050
Exons6
Ec32 orthologEc-28_002310.1
Ec32 ortholog descriptionRab3 GTPase-activating protein catalytic subunit
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.2404745-UTR-E-siliculosus-1a_F_contig1404:25535..259181622927920.2404745-UTR-E-siliculosus-1a_F_contig1404:25535..25918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 25536..25918 +
1696318737.1783383-UTR-E-siliculosus-1a_F_contig1404:25535..259181696318737.1783383-UTR-E-siliculosus-1a_F_contig1404:25535..25918Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 25536..25918 +
1622927920.2549307-UTR-E-siliculosus-1a_F_contig1404:25961..259981622927920.2549307-UTR-E-siliculosus-1a_F_contig1404:25961..25998Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 25962..25998 +
1696318737.1884365-UTR-E-siliculosus-1a_F_contig1404:25961..259981696318737.1884365-UTR-E-siliculosus-1a_F_contig1404:25961..25998Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 25962..25998 +
1622927920.2660484-UTR-E-siliculosus-1a_F_contig1404:26757..267631622927920.2660484-UTR-E-siliculosus-1a_F_contig1404:26757..26763Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 26758..26763 +
1696318737.198751-UTR-E-siliculosus-1a_F_contig1404:26757..267631696318737.198751-UTR-E-siliculosus-1a_F_contig1404:26757..26763Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 26758..26763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.27781-CDS-E-siliculosus-1a_F_contig1404:26763..269781622927920.27781-CDS-E-siliculosus-1a_F_contig1404:26763..26978Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 26764..26978 +
1696318737.2095559-CDS-E-siliculosus-1a_F_contig1404:26763..269781696318737.2095559-CDS-E-siliculosus-1a_F_contig1404:26763..26978Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 26764..26978 +
1622927920.2892034-CDS-E-siliculosus-1a_F_contig1404:27623..277001622927920.2892034-CDS-E-siliculosus-1a_F_contig1404:27623..27700Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 27624..27700 +
1696318737.22065-CDS-E-siliculosus-1a_F_contig1404:27623..277001696318737.22065-CDS-E-siliculosus-1a_F_contig1404:27623..27700Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 27624..27700 +
1622927920.3022218-CDS-E-siliculosus-1a_F_contig1404:28050..281881622927920.3022218-CDS-E-siliculosus-1a_F_contig1404:28050..28188Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 28051..28188 +
1696318737.2317924-CDS-E-siliculosus-1a_F_contig1404:28050..281881696318737.2317924-CDS-E-siliculosus-1a_F_contig1404:28050..28188Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 28051..28188 +
1622927920.3143954-CDS-E-siliculosus-1a_F_contig1404:28618..288121622927920.3143954-CDS-E-siliculosus-1a_F_contig1404:28618..28812Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 28619..28812 +
1696318737.2464964-CDS-E-siliculosus-1a_F_contig1404:28618..288121696318737.2464964-CDS-E-siliculosus-1a_F_contig1404:28618..28812Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 28619..28812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1404.2397.1prot_E-siliculosus-1a_F_contig1404.2397.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1404 26764..28812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1404.2397.1

>prot_E-siliculosus-1a_F_contig1404.2397.1 ID=prot_E-siliculosus-1a_F_contig1404.2397.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=208bp
MTAGGAATAGDEGDISEFPNLASFFGEEECSLDAWLTPEPSSSSATMSSR
EQEADERELLEDMEAWQLLHSWFGFGDILCLHEAATNPASPSRSGDGAGT
GLSLEQLLSTGVMAMEDRRCGAVLAVQQQPGGDGDGRRGRGSRDSASRRG
VSVKGYATLSPTGHADWTRRAETVRLESEASSVVPRSRLSLEALGELLAD
KALSAWGR
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mRNA from alignment at E-siliculosus-1a_F_contig1404:25536..28812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1404.2397.1 ID=mRNA_E-siliculosus-1a_F_contig1404.2397.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3277bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1404:25536..28812+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAAGGCCCAGCAGGACAGCAAGAACAACCTAAACGGCCGTTCCTCCT
TGCTCACGACTATGGTCGTTGCACGCCTCAATTGCGACCTAGGATTGCAC
ACTGCAGGGGGGCTTTGAATACGCAGTCTACAGCAAGGGCGATTTTTACA
TTCAACCAAGCACTCGATTTTCACATCATTAGCGTGTACAGCAGTACATA
AAATGTCCGACAATCAACAGCAGGGCTCACGCCCAGCTGCTGTCGGCTGC
GAGCACGACGACTGGAAGGACTTCTCTTGCGTCACAAAGTGGGAGTACTT
CATCAACGACGTGGCGGGAGCGGCAGCAGCAACAACAACGCAGAGGCGGA
GCAACAAGCAGCTCACTTATGACGGGCGCTCATACTGTTTGAGAGGGCTG
GTCGCCGGTCCGAACTTCGACAACAACATCAACAACAACAACAACAACAA
CAACAACGGCAAGGTGCAGAGAGCTTTGGTAGACGCGCAAGAAGGCAACA
CGCAGGGAATCTCAGTCGCGCGGAGCGGAGAGAGAGTAGAGGATGTCGAT
ATCATTGTTCGATACCATGTGTGGTTTGAAAATTGAATCTGTCCGCCCTG
CGAATGTGCCGTTGCCTCGCCTGTTGCACCTCTCTGTTGAGACGACCAAA
CTTGTAGACAAAGCAGCAGCCTCGCGAAGATTAGACGGTCCAGATGTCCG
ATATTGCTTCTTGGCAATGATGCTTGAGATGCAATGCGAAGGGTCTGGTG
ATGTACAGTCGGGTGGTGCTGTGATGCAGGTAGGCTGCTGCTGTGGACTG
TTGTCGTTTGGACAGGCGTTTTGGTGGAGAATGGTCACGTCCATCGCAGC
ATGTGTGAGAATAGCATGTGCAGCACCTGGCATTTGCAAGATTCGGGTGT
TCCGATCATGCATCATTCCAACGTTCTTCTGGTGCGTTCGCCATCTTCAT
CAGGTTGACGTTACATTGGTCCCATTCGGGGCCCACATAACGGTAGCAAT
GTCGCCGGCCCAGCCCTCCCTCGCGTCATCTACAGTAGATCAGATGCGAT
ACTAACACAGCATGCGTACCATTCATCTTGAAACAACTTTGGCAGCAACA
AGGTTGTCGTCATGACCCCCACTTAAACCAACCATTCCACAGCGCTGGGT
CAAGTTTTGACACTTTTTATCGGCCGCCAACCGCAATCCTCCTCCTGACA
CACAACCCTACACGTGTTCCAGGCTCGCATGACAGCAGGAGGAGCTGCAA
CTGCCGGCGACGAAGGCGACATCTCGGAGTTTCCCAACCTGGCGAGCTTT
TTCGGGGAGGAGGAGTGTTCCCTAGACGCGTGGCTGACTCCGGAACCGTC
ATCATCATCAGCGACGATGTCGAGTCGGGAGCAGGAAGCGGACGAGCGAG
AGCTCCTGGAAGACATGGAGGCGTGGCAACTGCTGCACAGTTGGTGCGTA
CACGGCGGCAGGCCTGGCGAACTTGGAAAGGGCGTTTTGGTTTTTGTGTA
TCACAACAAATCCATCTCTATCCATAGATATGGGTCTAGGAAACGTAGCA
ATTAATTTATAGCGCTAGCTGAACACTTACCAATGGTTCTACGTTTCCCC
AAGCAGCATGCAGTAATATCTGCTGTTTGGGTAACAGGCGCTACAAGGTG
GTTTCGTGTATCGTGTTTTGTTTTCTTTGCGCGGCGGGGTTAATGCAACA
CGGACGGCATTCGCCTTAAGCCTAAATTAGGTTCTCAGGTGTCACCCGTA
TCCACCTCGGGGATACTAGCCTGATCCCCAGTTTGCTCTCGTGGCTACGA
CCGCATTCACATGCGTAAAGAGGCGCGGTACTTTCGTGTACCTGCGATGG
ACCAGGAGCGAGGGCTAACGGAGCAGATCAGGCAGTGAAGTTCATGCAAA
GGAACCACAAAGAGAGCTCCCGGAAAATTCCCGAAATAGCAGAAGAGGAG
AAAAGTAGCGGGGCATGTCGTGAATCCCTCAGCAACAGTGTGTTCCTTGC
TTTCAAAGCATGTCGAGTGCAAAATGAACGTGCCCCAATCTGTGTTGCTC
TTCGTTTTTCCTGGTGGTACACGTGTGTGTTCGAGCAGGTTCGGGTTCGG
CGATATTTTGTGCCTGCATGAAGCAGCGACCAACCCTGCATCACCATCCC
GTTCGGGAGACGGCGGTGAGTCCGGGCTTCCGTTTTTGTGTCCTGCCTAG
CTCTAGGACGGTAAATGACCGCGGAAACAAATCCTCCTGGTCCATGCTCC
TGGGTCGGTCTGAACTGCTTGCACCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATTCGCGCGGCCGCTTGTCCTTGATCCTCGCTGCTACGATAACCTTCCCG
TGCCCTTCATATATTTTTCTCGCCTTTACGTGTAACTGCCTCGGTACATC
CTGCGGCACCCCCCGGTCCGCCCGTCTGTCGCCGTCGTCGTCGCTGTTTG
GCTTCCCTCGCGCAGCCGGGACGGGCTTGAGCTTGGAGCAGCTGCTTTCC
ACGGGAGTGATGGCCATGGAGGACCGGCGGTGCGGAGCGGTGTTGGCGGT
GCAGCAGCAGCCGGGGGGCGACGGCGACGGTCGGCGCGGTCGTGGCAGCC
GAGGTGCGAAGGGGGCGTTTGTTTGTCGCCTCGGTTTGTGTGTACCTACA
AGAGAGATGACCCGCTTCTTACCGCGCTGGTCGATCCCGTTTTGGTCATC
CGAGTCATGGATGTAATAGAGAATACTCTGCAACCAGCAGCTGTGCGTGT
GCGTTTGTTTTGTTTTTGTTGTTGTGAGCATCGGCCGTGCTAACCGGCTG
ACCGATGAAAATATGTCAATGGCAGCGGGTGTTGTTCACGTGTGTGTGTT
TGATAGCATCGACGACCGCGATAACCGCTTGATCAATGCATCGCCATCAG
TTCTTTTTAAGGCGGGGCAGACACAACGCTGCCAGGACGTGCGTGTATGT
GCATGTGCCCGTTTTTTTCCCTTGGACCCTTCCTTCCACGCTCCAGGATG
AACGAACCCCCCCGCCCCCACCCCCTTGCTTAGACTCGGCGTCGCGGAGA
GGGGTGTCGGTCAAGGGGTACGCCACACTCTCCCCCACCGGCCACGCCGA
CTGGACCCGGAGAGCCGAAACCGTGCGCCTGGAGAGCGAAGCGTCATCGG
TTGTGCCGCGTTCTCGGCTGTCTCTAGAGGCCCTCGGGGAGTTGCTCGCG
GACAAGGCGTTGTCCGCGTGGGGGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1404:25536..28812+

>mRNA_E-siliculosus-1a_F_contig1404.2397.1 ID=mRNA_E-siliculosus-1a_F_contig1404.2397.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1404:25536..28812+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAGCAGGAGGAGCTGCAACTGCCGGCGACGAAGGCGACATCTCGGA
GTTTCCCAACCTGGCGAGCTTTTTCGGGGAGGAGGAGTGTTCCCTAGACG
CGTGGCTGACTCCGGAACCGTCATCATCATCAGCGACGATGTCGAGTCGG
GAGCAGGAAGCGGACGAGCGAGAGCTCCTGGAAGACATGGAGGCGTGGCA
ACTGCTGCACAGTTGATGACAGCAGGAGGAGCTGCAACTGCCGGCGACGA
AGGCGACATCTCGGAGTTTCCCAACCTGGCGAGCTTTTTCGGGGAGGAGG
AGTGTTCCCTAGACGCGTGGCTGACTCCGGAACCGTCATCATCATCAGCG
ACGATGTCGAGTCGGGAGCAGGAAGCGGACGAGCGAGAGCTCCTGGAAGA
CATGGAGGCGTGGCAACTGCTGCACAGTTGGTTCGGGTTCGGCGATATTT
TGTGCCTGCATGAAGCAGCGACCAACCCTGCATCACCATCCCGTTCGGGA
GACGGCGGTTCGGGTTCGGCGATATTTTGTGCCTGCATGAAGCAGCGACC
AACCCTGCATCACCATCCCGTTCGGGAGACGGCGCCGGGACGGGCTTGAG
CTTGGAGCAGCTGCTTTCCACGGGAGTGATGGCCATGGAGGACCGGCGGT
GCGGAGCGGTGTTGGCGGTGCAGCAGCAGCCGGGGGGCGACGGCGACGGT
CGGCGCGGTCGTGGCAGCCGAGCCGGGACGGGCTTGAGCTTGGAGCAGCT
GCTTTCCACGGGAGTGATGGCCATGGAGGACCGGCGGTGCGGAGCGGTGT
TGGCGGTGCAGCAGCAGCCGGGGGGCGACGGCGACGGTCGGCGCGGTCGT
GGCAGCCGAGACTCGGCGTCGCGGAGAGGGGTGTCGGTCAAGGGGTACGC
CACACTCTCCCCCACCGGCCACGCCGACTGGACCCGGAGAGCCGAAACCG
TGCGCCTGGAGAGCGAAGCGTCATCGGTTGTGCCGCGTTCTCGGCTGTCT
CTAGAGGCCCTCGGGGAGTTGCTCGCGGACAAGGCGTTGTCCGCGTGGGG
GAGGACTCGGCGTCGCGGAGAGGGGTGTCGGTCAAGGGGTACGCCACACT
CTCCCCCACCGGCCACGCCGACTGGACCCGGAGAGCCGAAACCGTGCGCC
TGGAGAGCGAAGCGTCATCGGTTGTGCCGCGTTCTCGGCTGTCTCTAGAG
GCCCTCGGGGAGTTGCTCGCGGACAAGGCGTTGTCCGCGTGGGGGAGG
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