mRNA_E-siliculosus-1a_F_contig14037.2393.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.850e-47 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3
Query: 3 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR
Sbjct: 583 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 663
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI) HSP 1 Score: 168 bits (426), Expect = 5.140e-47 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 3
Query: 3 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
DVDMRDGNRRLFVNS GEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR
Sbjct: 601 DVDMRDGNRRLFVNSNGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 681
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE) HSP 1 Score: 120 bits (302), Expect = 4.550e-30 Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 3
Query: 27 RRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
RRLFVN+KG+ WT D SRFK+IG +WLGI NF PHVCRTFW+THALNSGQ++ SN++DFSS+LQVSS TLR
Sbjct: 580 RRLFVNTKGQSWTQKDISSRFKRIGMHWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFLQVSSTTLR 652
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE) HSP 1 Score: 120 bits (300), Expect = 8.480e-30 Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 3
Query: 27 RRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
RRLFVN+KG+ WT D SRFK+IG +WLGI NF PHVCRTFW+THALNSGQ++ SN++DFSS++QVSS TLR
Sbjct: 580 RRLFVNTKGQSWTQKDISSRFKRIGMHWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFIQVSSTTLR 652
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5J9C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 8.570e-30 Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 3
Query: 21 GNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
G RRLFVN++G+GW D SRFKKIG WL IENF PHVCR+FWA+ ALNSGQVNS+N++DFSS+LQVSSATLR
Sbjct: 616 GRRRLFVNARGQGWNQKDISSRFKKIGIEWLSIENFGPHVCRSFWASSALNSGQVNSNNLEDFSSFLQVSSATLR 690
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.410e-28 Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 3
Query: 18 DGNR-RLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
DGN RLFVNSKG+ WT D SRFK+IG WLGI+NF PHVCR+FW+THAL+SGQV++SN+++FSS+LQVSS+TLR
Sbjct: 601 DGNGGRLFVNSKGQSWTQKDVSSRFKRIGMQWLGIQNFGPHVCRSFWSTHALSSGQVSASNLENFSSFLQVSSSTLR 677
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: D7FZG9_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG9_ECTSI) HSP 1 Score: 115 bits (289), Expect = 2.120e-28 Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 3
Query: 3 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
D DM+D R+L +NSKG G+ ND S FKKIGA+WLG+ NF H CRTFWAT ALNSGQV+ SNI+DF S+LQVSS+TLR
Sbjct: 403 DADMKDSKRKLLLNSKGRGYVQNDINSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLR 483
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: D7FL01_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL01_ECTSI) HSP 1 Score: 114 bits (286), Expect = 5.740e-28 Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 3
Query: 9 DMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
DM D RRLF+NSKGE WT D SRFK IGA WLGI+ F PH CR+F+ATHALN+GQV +N+++FSS+LQVSSATLR
Sbjct: 424 DMGDDTRRLFLNSKGESWTQKDIGSRFKIIGANWLGIQKFCPHACRSFYATHALNTGQVTPANVENFSSFLQVSSATLR 502
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: Q8QN77_ESV1K (EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K) HSP 1 Score: 112 bits (280), Expect = 4.310e-27 Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 3
Query: 6 VDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
DM+D R+L +NSKG G ND S FKKIGA+WLG+ NF H CRTFWAT ALNSGQV+ SNI+DF S+LQVSS+TLR
Sbjct: 594 ADMKDSKRKLLLNSKGRGCVQNDINSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLR 673
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.110e-26 Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 3
Query: 6 VDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
+M+D R+L +NSKG+G+ +D +S FKKIGA+WLG+ NF H CRTFWAT ALNSGQV+ SNI+DF S+LQVSS+TLR
Sbjct: 1129 ANMKDDKRKLLLNSKGQGYVQSDIKSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLR 1208 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14037.2393.1 >prot_E-siliculosus-1a_F_contig14037.2393.1 ID=prot_E-siliculosus-1a_F_contig14037.2393.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp MRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATback to top mRNA from alignment at E-siliculosus-1a_F_contig14037:943..1187+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14037.2393.1 ID=mRNA_E-siliculosus-1a_F_contig14037.2393.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=245bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14037:943..1187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14037:943..1187+ >mRNA_E-siliculosus-1a_F_contig14037.2393.1 ID=mRNA_E-siliculosus-1a_F_contig14037.2393.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14037:943..1187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |