mRNA_E-siliculosus-1a_F_contig14037.2393.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14037.2393.1
Unique NamemRNA_E-siliculosus-1a_F_contig14037.2393.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.850e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3
Query:    3 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR
Sbjct:  583 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 663          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.140e-47
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 3
Query:    3 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            DVDMRDGNRRLFVNS GEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR
Sbjct:  601 DVDMRDGNRRLFVNSNGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 681          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.550e-30
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 3
Query:   27 RRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            RRLFVN+KG+ WT  D  SRFK+IG +WLGI NF PHVCRTFW+THALNSGQ++ SN++DFSS+LQVSS TLR
Sbjct:  580 RRLFVNTKGQSWTQKDISSRFKRIGMHWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFLQVSSTTLR 652          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.480e-30
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 3
Query:   27 RRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            RRLFVN+KG+ WT  D  SRFK+IG +WLGI NF PHVCRTFW+THALNSGQ++ SN++DFSS++QVSS TLR
Sbjct:  580 RRLFVNTKGQSWTQKDISSRFKRIGMHWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFIQVSSTTLR 652          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5J9C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.570e-30
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 3
Query:   21 GNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            G RRLFVN++G+GW   D  SRFKKIG  WL IENF PHVCR+FWA+ ALNSGQVNS+N++DFSS+LQVSSATLR
Sbjct:  616 GRRRLFVNARGQGWNQKDISSRFKKIGIEWLSIENFGPHVCRSFWASSALNSGQVNSNNLEDFSSFLQVSSATLR 690          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.410e-28
Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 3
Query:   18 DGNR-RLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            DGN  RLFVNSKG+ WT  D  SRFK+IG  WLGI+NF PHVCR+FW+THAL+SGQV++SN+++FSS+LQVSS+TLR
Sbjct:  601 DGNGGRLFVNSKGQSWTQKDVSSRFKRIGMQWLGIQNFGPHVCRSFWSTHALSSGQVSASNLENFSSFLQVSSSTLR 677          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: D7FZG9_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.120e-28
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 3
Query:    3 DVDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            D DM+D  R+L +NSKG G+  ND  S FKKIGA+WLG+ NF  H CRTFWAT ALNSGQV+ SNI+DF S+LQVSS+TLR
Sbjct:  403 DADMKDSKRKLLLNSKGRGYVQNDINSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLR 483          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: D7FL01_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL01_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 5.740e-28
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 3
Query:    9 DMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
            DM D  RRLF+NSKGE WT  D  SRFK IGA WLGI+ F PH CR+F+ATHALN+GQV  +N+++FSS+LQVSSATLR
Sbjct:  424 DMGDDTRRLFLNSKGESWTQKDIGSRFKIIGANWLGIQKFCPHACRSFYATHALNTGQVTPANVENFSSFLQVSSATLR 502          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: Q8QN77_ESV1K (EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K)

HSP 1 Score: 112 bits (280), Expect = 4.310e-27
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    6 VDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
             DM+D  R+L +NSKG G   ND  S FKKIGA+WLG+ NF  H CRTFWAT ALNSGQV+ SNI+DF S+LQVSS+TLR
Sbjct:  594 ADMKDSKRKLLLNSKGRGCVQNDINSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLR 673          
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.110e-26
Identity = 51/80 (63.75%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    6 VDMRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLR 245
             +M+D  R+L +NSKG+G+  +D +S FKKIGA+WLG+ NF  H CRTFWAT ALNSGQV+ SNI+DF S+LQVSS+TLR
Sbjct: 1129 ANMKDDKRKLLLNSKGQGYVQSDIKSPFKKIGAHWLGLPNFCVHTCRTFWATAALNSGQVDPSNIEDFGSFLQVSSSTLR 1208          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14037.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JVT4_9PHAE1.850e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP31_ECTSI5.140e-4798.77EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
A0A6H5L2T2_9PHAE4.550e-3072.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T8_9PHAE8.480e-3071.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9C0_9PHAE8.570e-3073.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI6_ECTSI1.410e-2870.13EsV-1-213-like protein 2 n=1 Tax=Ectocarpus silicu... [more]
D7FZG9_ECTSI2.120e-2866.67EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FL01_ECTSI5.740e-2868.35EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN77_ESV1K4.310e-2766.25EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K[more]
A0A6H5JJP2_9PHAE1.110e-2663.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14037contigE-siliculosus-1a_F_contig14037:943..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size234
Model size246
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.4332023-UTR-E-siliculosus-1a_F_contig14037:942..9531622927919.4332023-UTR-E-siliculosus-1a_F_contig14037:942..953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14037 943..953 +
1696318736.9160123-UTR-E-siliculosus-1a_F_contig14037:942..9531696318736.9160123-UTR-E-siliculosus-1a_F_contig14037:942..953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14037 943..953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.448787-CDS-E-siliculosus-1a_F_contig14037:953..11871622927919.448787-CDS-E-siliculosus-1a_F_contig14037:953..1187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14037 954..1187 +
1696318736.9273129-CDS-E-siliculosus-1a_F_contig14037:953..11871696318736.9273129-CDS-E-siliculosus-1a_F_contig14037:953..1187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14037 954..1187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14037.2393.1prot_E-siliculosus-1a_F_contig14037.2393.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14037 954..1187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14037.2393.1

>prot_E-siliculosus-1a_F_contig14037.2393.1 ID=prot_E-siliculosus-1a_F_contig14037.2393.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
MRDGNRRLFVNSKGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWAT
HALNSGQVNSSNIDDFSSYLQVSSATLR
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mRNA from alignment at E-siliculosus-1a_F_contig14037:943..1187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14037.2393.1 ID=mRNA_E-siliculosus-1a_F_contig14037.2393.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=245bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14037:943..1187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGACGTAGACATGCGCGACGGCAACAGGAGGCTGTTTGTCAATTCGAAG GGGGAAGGGTGGACCCCAAACGACACTCGGTCGCGTTTCAAAAAGATTGG GGCGTACTGGCTAGGAATTGAAAACTTCTCTCCCCATGTGTGCCGTACGT TTTGGGCCACACACGCCCTGAATTCGGGCCAAGTCAATAGCAGTAATATC GACGACTTTAGCTCCTATCTCCAGGTGTCGAGTGCCACGTTAAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14037:943..1187+

>mRNA_E-siliculosus-1a_F_contig14037.2393.1 ID=mRNA_E-siliculosus-1a_F_contig14037.2393.1|Name=mRNA_E-siliculosus-1a_F_contig14037.2393.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14037:943..1187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCGACGGCAACAGGAGGCTGTTTGTCAATTCGAAGGGGGAAGGGTG
GACCCCAAACGACACTCGGTCGCGTTTCAAAAAGATTGGGGCGTACTGGC
TAGGAATTGAAAACTTCTCTCCCCATGTGTGCCGTACGTTTTGGGCCACA
CACGCCCTGAATTCGGGCCAAGTCAATAGCAGTAATATCGACGACTTTAG
CTCCTATCTCCAGGTGTCGAGTGCCACGTTAAGGATGCGCGACGGCAACA
GGAGGCTGTTTGTCAATTCGAAGGGGGAAGGGTGGACCCCAAACGACACT
CGGTCGCGTTTCAAAAAGATTGGGGCGTACTGGCTAGGAATTGAAAACTT
CTCTCCCCATGTGTGCCGTACGTTTTGGGCCACACACGCCCTGAATTCGG
GCCAAGTCAATAGCAGTAATATCGACGACTTTAGCTCCTATCTCCAGGTG
TCGAGTGCCACGTTAAGG
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